ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart18e05 |
|---|---|
| Clone Library Name | barley_pub |
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 49.7 bits (117), Expect = 4e-06 Identities = 22/55 (40%), Positives = 30/55 (54%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*G 316 GE GH++R+CP++ DR+CY CG+PGHISREC + G Sbjct: 202 GESGHMSRECPSAGSTGSG---------------DRACYKCGKPGHISRECPEAG 241 Score = 47.8 bits (112), Expect = 2e-05 Identities = 21/51 (41%), Positives = 27/51 (52%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGHI+R+CP + DR+CY CGE GHISR+C Sbjct: 228 GKPGHISRECPEAGGSYGGSRGGG----------DRTCYKCGEAGHISRDC 268 Score = 46.6 bits (109), Expect = 3e-05 Identities = 22/55 (40%), Positives = 25/55 (45%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*G 316 G+ GHI+RDCP DR CY CGE GH+SREC G Sbjct: 174 GDAGHISRDCPNGQGGYSGAG-------------DRKCYKCGESGHMSRECPSAG 215 Score = 46.6 bits (109), Expect = 3e-05 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXX--XGDRSCYNCGEPGHISREC 328 G+ GH++RDCP+S GDR+CY CG+ GHISR+C Sbjct: 103 GQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155 Score = 45.4 bits (106), Expect = 8e-05 Identities = 20/51 (39%), Positives = 25/51 (49%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+ GHI+RDCP DR+CY CG+ GHISR+C Sbjct: 146 GDAGHISRDCPNGQGGYSGAG-------------DRTCYKCGDAGHISRDC 183 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 GE GH++RDCP S+ CY CG+ GH+SR+C Sbjct: 76 GEAGHMSRDCPNSAKPGAAKGF--------------ECYKCGQEGHLSRDC 112 Score = 38.5 bits (88), Expect = 0.009 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 GE GH++R+CP + +C+ CGE GH+SR+C Sbjct: 49 GEEGHMSRECPNEARSGAAGAM--------------TCFRCGEAGHMSRDC 85 Score = 37.7 bits (86), Expect = 0.016 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+ GH AR+CP + +C+ CGE GH+SREC Sbjct: 22 GKEGHYARECPEADSKGDERST--------------TCFRCGEEGHMSREC 58 Score = 29.6 bits (65), Expect = 4.3 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -2 Query: 372 SCYNCGEPGHISREC 328 SC NCG+ GH +REC Sbjct: 17 SCRNCGKEGHYAREC 31
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+PGH+ARDC + ++ CY+CGE GHI ++CTK Sbjct: 97 GKPGHLARDCDHAD--------------------EQKCYSCGEFGHIQKDCTK 129 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRS----CYNCGEPGHISREC 328 GE GH+A+DC R CYNCG+PGH++R+C Sbjct: 52 GESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106 Score = 38.1 bits (87), Expect = 0.012 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 GE GHI +DC + + +CY CGE GH++RECT Sbjct: 118 GEFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 167 Score = 35.8 bits (81), Expect = 0.060 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Frame = -2 Query: 480 GEPGHIARDCPTS-SXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G GH AR+CPT CY CGE GH++++C Sbjct: 10 GRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+PGH+ARDC + ++ CY+CGE GHI ++CTK Sbjct: 102 GKPGHLARDCDHAD--------------------EQKCYSCGEFGHIQKDCTK 134 Score = 39.3 bits (90), Expect = 0.005 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXX---XGDRSCYNCGEPGHISREC 328 GE GH+A+DC ++ CYNCG+PGH++R+C Sbjct: 58 GESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111 Score = 38.1 bits (87), Expect = 0.012 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 GE GHI +DC + + +CY CGE GH++RECT Sbjct: 123 GEFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172 Score = 35.8 bits (81), Expect = 0.060 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXX-------XXXGDRSCYNCGEPGHISRECTK 322 G GH AR+CPT CY CGE GH++++C Sbjct: 10 GRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDL 69 Query: 321 *GDLC 307 D C Sbjct: 70 QEDAC 74
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+PGH+ARDC + ++ CY+CGE GHI ++CTK Sbjct: 102 GKPGHLARDCDHAD--------------------EQKCYSCGEFGHIQKDCTK 134 Score = 39.3 bits (90), Expect = 0.005 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXX---XGDRSCYNCGEPGHISREC 328 GE GH+A+DC ++ CYNCG+PGH++R+C Sbjct: 58 GESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111 Score = 38.1 bits (87), Expect = 0.012 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 GE GHI +DC + + +CY CGE GH++RECT Sbjct: 123 GEFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172 Score = 35.8 bits (81), Expect = 0.060 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXX-------XXXGDRSCYNCGEPGHISRECTK 322 G GH AR+CPT CY CGE GH++++C Sbjct: 10 GRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDL 69 Query: 321 *GDLC 307 D C Sbjct: 70 QEDAC 74
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+PGH+ARDC + ++ CY+CGE GHI ++CTK Sbjct: 102 GKPGHLARDCDHAD--------------------EQKCYSCGEFGHIQKDCTK 134 Score = 39.3 bits (90), Expect = 0.005 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXX---XGDRSCYNCGEPGHISREC 328 GE GH+A+DC ++ CYNCG+PGH++R+C Sbjct: 58 GESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111 Score = 38.1 bits (87), Expect = 0.012 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 GE GHI +DC + + +CY CGE GH++RECT Sbjct: 123 GEFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172 Score = 35.8 bits (81), Expect = 0.060 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXX-------XXXGDRSCYNCGEPGHISRECTK 322 G GH AR+CPT CY CGE GH++++C Sbjct: 10 GRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDL 69 Query: 321 *GDLC 307 D C Sbjct: 70 QEDAC 74
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+PGH+ARDC + ++ CY+CGE GHI ++CTK Sbjct: 103 GKPGHLARDCDHAD--------------------EQKCYSCGEFGHIQKDCTK 135 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRS----CYNCGEPGHISREC 328 GE GH+A+DC R CYNCG+PGH++R+C Sbjct: 58 GESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112 Score = 38.1 bits (87), Expect = 0.012 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 GE GHI +DC + + +CY CGE GH++RECT Sbjct: 124 GEFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 173 Score = 33.9 bits (76), Expect = 0.23 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 7/58 (12%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXX-------XXXGDRSCYNCGEPGHISREC 328 G GH AR+CPT CY CGE GH++++C Sbjct: 10 GRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDR---SCYNCGEPGHISRECTK*G 316 GEPGH+AR+C G SCY+CGE GH +R+CT G Sbjct: 142 GEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199 Score = 38.5 bits (88), Expect = 0.009 Identities = 13/21 (61%), Positives = 18/21 (85%) Frame = -2 Query: 378 DRSCYNCGEPGHISRECTK*G 316 D SC+ CGEPGH++REC++ G Sbjct: 135 DNSCFKCGEPGHMARECSQGG 155
>GRP2_NICSY (P27484) Glycine-rich protein 2| Length = 214 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/55 (38%), Positives = 22/55 (40%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*G 316 GE GH ARDC S CY CGE GH +RECT G Sbjct: 163 GESGHFARDCSQSGGGGGGGRFGGGGGGGGGG----GCYKCGEDGHFARECTSGG 213 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/18 (50%), Positives = 14/18 (77%) Frame = -2 Query: 369 CYNCGEPGHISRECTK*G 316 C+ CGE GH +R+C++ G Sbjct: 159 CFKCGESGHFARDCSQSG 176
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+ GH++RDC DR CYNC E GHIS++C K Sbjct: 122 GQAGHMSRDCQN----------------------DRLCYNCNETGHISKDCPK 152 Score = 36.2 bits (82), Expect = 0.046 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 G+ GH+A DC + +R CYNC +PGH+ +CT Sbjct: 10 GKIGHLAEDCDS----------------------ERLCYNCNKPGHVQTDCT 39 Score = 35.4 bits (80), Expect = 0.078 Identities = 16/51 (31%), Positives = 20/51 (39%) Frame = -2 Query: 477 EPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 +PGH+ DC + CYNCGE GH+ ECT Sbjct: 30 KPGHVQTDCTMPRTVEF-----------------KQCYNCGETGHVRSECT 63 Score = 34.7 bits (78), Expect = 0.13 Identities = 15/52 (28%), Positives = 22/52 (42%) Frame = -2 Query: 477 EPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 + GHI+R+CP SCY CG P H++++C K Sbjct: 72 QTGHISRECPEPKKTSRFSKV--------------SCYKCGGPNHMAKDCMK 109 Score = 32.7 bits (73), Expect = 0.51 Identities = 15/51 (29%), Positives = 20/51 (39%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G P H+A+DC CY CG+ GH+SR+C Sbjct: 98 GGPNHMAKDCMKEDGISGL-----------------KCYTCGQAGHMSRDC 131
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline| helicase 1) Length = 763 Score = 39.3 bits (90), Expect = 0.005 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -2 Query: 477 EPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 +PGH + DCP R CYNC +PGH SRECT+ Sbjct: 165 QPGHRSSDCPEPRKERE----------------PRVCYNCQQPGHTSRECTE 200 Score = 32.0 bits (71), Expect = 0.87 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 R C+NCGE GH S EC Sbjct: 262 RGCFNCGEQGHRSNEC 277
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 37.7 bits (86), Expect = 0.016 Identities = 15/21 (71%), Positives = 17/21 (80%) Frame = -2 Query: 369 CYNCGEPGHISRECTK*GDLC 307 CYNCGE GH +RECTK G +C Sbjct: 19 CYNCGENGHQARECTK-GSIC 38 Score = 37.0 bits (84), Expect = 0.027 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 GE GH AR+C S +++CY CG GH+ R+C Sbjct: 23 GENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDC 73 Score = 36.2 bits (82), Expect = 0.046 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G GH+ RDCP+S CY CG GHI+R+C Sbjct: 64 GTAGHLVRDCPSSPNPRQGA----------------ECYKCGRVGHIARDC 98 Score = 35.8 bits (81), Expect = 0.060 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 G GHIARDC T+ + +CY CG GH +R+CT Sbjct: 89 GRVGHIARDCRTNGQQSGGRFGGHRS--------NMNCYACGSYGHQARDCT 132 Score = 34.3 bits (77), Expect = 0.17 Identities = 16/52 (30%), Positives = 19/52 (36%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 G GH ARDC + CY C +PGHI+ CT Sbjct: 122 GSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCT 173
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 37.0 bits (84), Expect = 0.027 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*GDLCPS 301 G+ GH+ R+C + CY+CG+PGH +R C C S Sbjct: 409 GKTGHLKRNCK-----------------------QQKCYHCGKPGHQARNCRSKNGKCSS 445 Query: 300 PLYRRR------LNTSRLSFADRSQPP 238 Y +R + S +S S PP Sbjct: 446 APYGQRSQPQNNFHQSNMSSVTPSAPP 472 Score = 30.4 bits (67), Expect = 2.5 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%) Frame = -2 Query: 375 RSCYNCGEPGHISRECTK*GDL-CPSPLYRRRL------NTSRLSFADRSQPPRSLFYLA 217 R CY CG+ GH+ R C + C P ++ R S + RSQP + Sbjct: 403 RRCYGCGKTGHLKRNCKQQKCYHCGKPGHQARNCRSKNGKCSSAPYGQRSQPQNNFHQSN 462 Query: 216 PSPPLPS 196 S PS Sbjct: 463 MSSVTPS 469
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 37.0 bits (84), Expect = 0.027 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*GDLCPS 301 G+ GH+ R+C + CY+CG+PGH +R C C S Sbjct: 409 GKTGHLKRNCK-----------------------QQKCYHCGKPGHQARNCRSKNGKCSS 445 Query: 300 PLYRRR------LNTSRLSFADRSQPP 238 Y +R + S +S S PP Sbjct: 446 APYGQRSQPQNNFHQSNMSSVTPSAPP 472 Score = 30.4 bits (67), Expect = 2.5 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%) Frame = -2 Query: 375 RSCYNCGEPGHISRECTK*GDL-CPSPLYRRRL------NTSRLSFADRSQPPRSLFYLA 217 R CY CG+ GH+ R C + C P ++ R S + RSQP + Sbjct: 403 RRCYGCGKTGHLKRNCKQQKCYHCGKPGHQARNCRSKNGKCSSAPYGQRSQPQNNFHQSN 462 Query: 216 PSPPLPS 196 S PS Sbjct: 463 MSSVTPS 469
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline| helicase 4) Length = 1156 Score = 36.6 bits (83), Expect = 0.035 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = -2 Query: 375 RSCYNCGEPGHISRECTK 322 R C+NCGE GHIS+EC K Sbjct: 570 RGCHNCGEEGHISKECDK 587
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 36.2 bits (82), Expect = 0.046 Identities = 12/24 (50%), Positives = 20/24 (83%) Frame = -2 Query: 378 DRSCYNCGEPGHISRECTK*GDLC 307 ++ CYNCG+PGH++R+C + G +C Sbjct: 384 NQKCYNCGKPGHLARQCRQ-GIIC 406 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/51 (25%), Positives = 21/51 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGH+AR C C++CG+ GH+ ++C Sbjct: 391 GKPGHLARQCRQGII----------------------CHHCGKRGHMQKDC 419
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 36.2 bits (82), Expect = 0.046 Identities = 12/24 (50%), Positives = 20/24 (83%) Frame = -2 Query: 378 DRSCYNCGEPGHISRECTK*GDLC 307 ++ CYNCG+PGH++R+C + G +C Sbjct: 384 NQKCYNCGKPGHLARQCRQ-GIIC 406 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/51 (25%), Positives = 21/51 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGH+AR C C++CG+ GH+ ++C Sbjct: 391 GKPGHLARQCRQGII----------------------CHHCGKRGHMQKDC 419
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 36.2 bits (82), Expect = 0.046 Identities = 12/24 (50%), Positives = 20/24 (83%) Frame = -2 Query: 378 DRSCYNCGEPGHISRECTK*GDLC 307 ++ CYNCG+PGH++R+C + G +C Sbjct: 384 NQKCYNCGKPGHLARQCRQ-GIIC 406 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/51 (25%), Positives = 21/51 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGH+AR C C++CG+ GH+ ++C Sbjct: 391 GKPGHLARQCRQGII----------------------CHHCGKRGHMQKDC 419
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 36.2 bits (82), Expect = 0.046 Identities = 12/24 (50%), Positives = 20/24 (83%) Frame = -2 Query: 378 DRSCYNCGEPGHISRECTK*GDLC 307 ++ CYNCG+PGH++R+C + G +C Sbjct: 384 NQKCYNCGKPGHLARQCRQ-GIIC 406 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/51 (25%), Positives = 21/51 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGH+AR C C++CG+ GH+ ++C Sbjct: 391 GKPGHLARQCRQGII----------------------CHHCGKRGHMQKDC 419
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 35.8 bits (81), Expect = 0.060 Identities = 17/50 (34%), Positives = 21/50 (42%) Frame = -2 Query: 477 EPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 +PGH + DCP R CYNC +PGH SR+C Sbjct: 378 QPGHRSNDCPEPKKERE----------------PRVCYNCQQPGHNSRDC 411 Score = 35.8 bits (81), Expect = 0.060 Identities = 17/50 (34%), Positives = 21/50 (42%) Frame = -2 Query: 477 EPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 +PGH + DCP R CYNC +PGH SR+C Sbjct: 264 QPGHRSNDCPEPKKERE----------------PRVCYNCQQPGHNSRDC 297 Score = 32.0 bits (71), Expect = 0.87 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 R C+NCGE GH S EC Sbjct: 473 RGCFNCGEQGHRSNEC 488 Score = 28.5 bits (62), Expect = 9.6 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = -2 Query: 378 DRSCYNCGEPGHISREC 328 + +C+NC +PGH S +C Sbjct: 370 NNNCFNCQQPGHRSNDC 386 Score = 28.5 bits (62), Expect = 9.6 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = -2 Query: 378 DRSCYNCGEPGHISREC 328 + +C+NC +PGH S +C Sbjct: 256 NNNCFNCQQPGHRSNDC 272
>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13| Length = 166 Score = 35.8 bits (81), Expect = 0.060 Identities = 16/58 (27%), Positives = 21/58 (36%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*GDLC 307 G GH AR CP +CY CGE G ++ C G++C Sbjct: 10 GHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNIC 67 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRS----CYNCGEPGHISRECTK 322 G GHIA+DC DR CY+CG+ GHI ++C + Sbjct: 71 GRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQ 127 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/53 (30%), Positives = 20/53 (37%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G GH+ARDC CY CGE GH++ C+K Sbjct: 95 GRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQV--KCYRCGEIGHVAINCSK 145 Score = 30.8 bits (68), Expect = 1.9 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG GHI+++C Sbjct: 67 CYNCGRSGHIAKDC 80
>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 34.3 bits (77), Expect = 0.17 Identities = 10/16 (62%), Positives = 15/16 (93%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 ++CYNCG+PGH+S +C Sbjct: 381 QTCYNCGKPGHLSSQC 396 Score = 28.9 bits (63), Expect = 7.3 Identities = 12/51 (23%), Positives = 20/51 (39%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGH++ C + C+ C +PGH S++C Sbjct: 387 GKPGHLSSQC----------------------RAPKVCFKCKQPGHFSKQC 415
>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 34.3 bits (77), Expect = 0.17 Identities = 10/16 (62%), Positives = 15/16 (93%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 ++CYNCG+PGH+S +C Sbjct: 381 QTCYNCGKPGHLSSQC 396 Score = 28.9 bits (63), Expect = 7.3 Identities = 12/51 (23%), Positives = 20/51 (39%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGH++ C + C+ C +PGH S++C Sbjct: 387 GKPGHLSSQC----------------------RAPKVCFKCKQPGHFSKQC 415
>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 34.3 bits (77), Expect = 0.17 Identities = 10/16 (62%), Positives = 15/16 (93%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 ++CYNCG+PGH+S +C Sbjct: 381 QTCYNCGKPGHLSSQC 396 Score = 28.9 bits (63), Expect = 7.3 Identities = 12/51 (23%), Positives = 20/51 (39%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGH++ C + C+ C +PGH S++C Sbjct: 387 GKPGHLSSQC----------------------RAPKVCFKCKQPGHFSKQC 415
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT| 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1328 Score = 33.9 bits (76), Expect = 0.23 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 R+CYNC +PGH R+C Sbjct: 230 RNCYNCNQPGHFKRDC 245
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 33.9 bits (76), Expect = 0.23 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 5/100 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK-----*G 316 G+ GHIAR+C + C+ CG+ GH +ECT+ G Sbjct: 395 GKEGHIARNCRAPRK--------------------KGCWKCGKEGHQMKECTERQANFLG 434 Query: 315 DLCPSPLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPS 196 + PS Y+ R S + + PP F PS Sbjct: 435 KIWPS--YKGRPGNFLQSRPEPTAPPEESFRFGEETATPS 472 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI+R C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 441 Score = 33.5 bits (75), Expect = 0.30 Identities = 12/21 (57%), Positives = 17/21 (80%) Frame = -2 Query: 369 CYNCGEPGHISRECTK*GDLC 307 CYNCG+PGH +R+C + G +C Sbjct: 381 CYNCGKPGHQARQCRQ-GIIC 400 Score = 30.0 bits (66), Expect = 3.3 Identities = 15/51 (29%), Positives = 20/51 (39%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGH AR C C+NCG+ GH+ +EC Sbjct: 385 GKPGHQARQCRQGII----------------------CHNCGKRGHMQKEC 413
>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 827 Score = 33.1 bits (74), Expect = 0.39 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 R+C+NCG+PGH ++C Sbjct: 458 RTCFNCGKPGHFKKDC 473
>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 446 Score = 32.7 bits (73), Expect = 0.51 Identities = 11/23 (47%), Positives = 18/23 (78%) Frame = -2 Query: 375 RSCYNCGEPGHISRECTK*GDLC 307 + CY CG+PGH++R+C + G +C Sbjct: 384 QKCYYCGKPGHLARQCRQ-GIIC 405 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/51 (25%), Positives = 21/51 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+PGH+AR C C++CG+ GH+ ++C Sbjct: 390 GKPGHLARQCRQGII----------------------CHHCGKRGHMQKDC 418
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 32.0 bits (71), Expect = 0.87 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 30 SPHHHHHTQKSPTIIHHHDLKH 95 +PHHHHH +P HHH H Sbjct: 203 APHHHHHHHHAPHHHHHHHHGH 224 Score = 31.2 bits (69), Expect = 1.5 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 30 SPHHHHHTQKSPTIIHHH 83 +PHHHHH +P HHH Sbjct: 193 APHHHHHHHHAPHHHHHH 210 Score = 31.2 bits (69), Expect = 1.5 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 30 SPHHHHHTQKSPTIIHHH 83 +PHHHHH +P HHH Sbjct: 183 APHHHHHHHHAPHHHHHH 200 Score = 31.2 bits (69), Expect = 1.5 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 30 SPHHHHHTQKSPTIIHHH 83 +PHHHHH +P HHH Sbjct: 173 APHHHHHHHHAPHHHHHH 190 Score = 29.3 bits (64), Expect = 5.6 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKH 95 HHHHH + HHHD H Sbjct: 296 HHHHHHHDAHHHHHHHDAHH 315 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/20 (50%), Positives = 10/20 (50%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKH 95 HHHHH HHHD H Sbjct: 326 HHHHHHDAHHHHHHHHDAHH 345 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/20 (50%), Positives = 10/20 (50%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKH 95 HHHHH HHHD H Sbjct: 316 HHHHHHDAHHHHHHHHDAHH 335 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/20 (50%), Positives = 10/20 (50%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKH 95 HHHHH HHHD H Sbjct: 306 HHHHHHDAHHHHHHHHDAHH 325 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/20 (50%), Positives = 10/20 (50%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKH 95 HHHHH HHHD H Sbjct: 287 HHHHHHDAHHHHHHHHDAHH 306 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/20 (50%), Positives = 10/20 (50%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKH 95 HHHHH HHHD H Sbjct: 277 HHHHHHDAHHHHHHHHDAHH 296 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/20 (50%), Positives = 10/20 (50%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKH 95 HHHHH HHHD H Sbjct: 267 HHHHHHDAHHHHHHHHDAHH 286 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/20 (50%), Positives = 10/20 (50%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKH 95 HHHHH HHHD H Sbjct: 257 HHHHHHDAHHHHHHHHDAHH 276 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/20 (50%), Positives = 10/20 (50%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKH 95 HHHHH HHHD H Sbjct: 247 HHHHHHDAHHHHHHHHDAHH 266
>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 449 Score = 32.0 bits (71), Expect = 0.87 Identities = 15/54 (27%), Positives = 23/54 (42%) Frame = -2 Query: 477 EPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*G 316 +PGH+AR C + + C NCG+PGH++ C + G Sbjct: 382 KPGHLARQCKEA----------------------KRCNNCGKPGHLAANCWQGG 413 Score = 30.0 bits (66), Expect = 3.3 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NC +PGH++R+C Sbjct: 377 CFNCKKPGHLARQC 390
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 31.6 bits (70), Expect = 1.1 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 5/114 (4%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK-----*G 316 G+ GHIAR+C + C+ CG+ GH ++CT+ G Sbjct: 395 GKEGHIARNCRAPRK--------------------KGCWKCGKEGHQMKDCTERQANFLG 434 Query: 315 DLCPSPLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPSLGEARPKVKSVSQS 154 + PS Y+ R S + + PP P P P R V++ + S Sbjct: 435 KIWPS--YKGRPGNFLQSRPEPTAPP--FLQSRPEPTAPPEESFRSGVETTTPS 484 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI+R C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/102 (21%), Positives = 36/102 (35%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*GDLCPS 301 G+ GHIAR+C + C+ CG+ GH ++CT+ Sbjct: 395 GKEGHIARNCKAPRK--------------------KGCWKCGKEGHQMKDCTE------- 427 Query: 300 PLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPSLGEARPK 175 R+ N + P + P P P ++RP+ Sbjct: 428 ----RQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPE 465 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI+R C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 501 Score = 31.2 bits (69), Expect = 1.5 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 5/100 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK-----*G 316 G+ GHIA++C + C+ CG GH ++CT+ G Sbjct: 397 GKEGHIAKNCRAPRK--------------------KGCWRCGREGHQMKDCTERQANFLG 436 Query: 315 DLCPSPLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPS 196 + PS Y+ R S + + PP F PS Sbjct: 437 KIWPS--YKGRPGNFLQSRPEPTAPPEESFRFGEEKTTPS 474 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 393 CFNCGKEGHIAKNC 406
>CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (Clipper homolog) (Clipper/CPSF 30K) Length = 211 Score = 31.2 bits (69), Expect = 1.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 372 SCYNCGEPGHISRECTK 322 +CY CGE GH + CTK Sbjct: 186 TCYKCGEKGHYANRCTK 202
>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (NS1 effector domain-binding protein 1) (Neb-1) (No arches homolog) Length = 269 Score = 31.2 bits (69), Expect = 1.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 372 SCYNCGEPGHISRECTK 322 +CY CGE GH + CTK Sbjct: 244 TCYKCGEKGHYANRCTK 260
>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 622 Score = 30.8 bits (68), Expect = 1.9 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 + CYNCG+ GH+ R C Sbjct: 590 KKCYNCGQIGHLKRSC 605
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.8 bits (68), Expect = 1.9 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK-----*G 316 G+ GHIAR+C + C+ CG+ GH ++CT+ G Sbjct: 395 GKEGHIARNCRAPRK--------------------KGCWKCGKEGHQMKDCTERQANFLG 434 Query: 315 DLCPSPLYRRRLNTSRLSFADRSQPPRSLF 226 + PS Y+ R S + + PP F Sbjct: 435 KIWPS--YKGRPGNFLQSRPEPTAPPEESF 462 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI+R C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.8 bits (68), Expect = 1.9 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 5/100 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK-----*G 316 G+ GHIAR+C + C+ CG GH ++CT+ G Sbjct: 395 GKEGHIARNCKAPRK--------------------KGCWKCGREGHQMKDCTERQANFLG 434 Query: 315 DLCPSPLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPS 196 + PS ++ R S + + PP F PS Sbjct: 435 KIWPS--HKGRPGNFLQSRPEPTAPPEESFRFGDETTTPS 472 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI+R C Sbjct: 391 CFNCGKEGHIARNC 404
>ZCH14_MOUSE (Q8VIG0) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 956 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -2 Query: 372 SCYNCGEPGHISRECTK*GDLCPSPLYRRRLNTSRLSFA 256 SCYNCG GH +++C + PS + R+ T RL +A Sbjct: 914 SCYNCGATGHRAQDCKQ-----PSMDFNRQ-GTFRLKYA 946
>FRIZ4_DROME (Q9NBW1) Protein frizzled-4 precursor (dFz4)| Length = 705 Score = 30.8 bits (68), Expect = 1.9 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +3 Query: 30 SPHHHHHTQKSPTIIH-HHDLKH 95 SPHHHHH Q+ H HH+ +H Sbjct: 644 SPHHHHHQQQQHHQFHPHHNHQH 666
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 30.8 bits (68), Expect = 1.9 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 R CYNCG+ GH+ + C Sbjct: 543 RKCYNCGQIGHLKKNC 558
>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 666 Score = 30.8 bits (68), Expect = 1.9 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 + CYNCG+ GH+ R C Sbjct: 542 KKCYNCGQIGHLKRSC 557
>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1433 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/51 (27%), Positives = 19/51 (37%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G PGH AR + C+NCG+ GHI++ C Sbjct: 353 GGPGHKARVLAEAMSQVNSVTVMMQKGNFKNQRKTVKCFNCGKEGHIAKNC 403
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +3 Query: 6 KKKRDLLQSPHHHHHTQKSPTIIHHHDLKHQLRVRVP 116 + KR L Q H HHH HHH +HQ + P Sbjct: 51 RNKRTLAQKQHEHHHHHH-----HHHHHQHQAPHQAP 82
>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 1168 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 372 SCYNCGEPGHISRECTK*GDLCPSPLYRRRLNTSRLSFADRSQP 241 SCYNCG GH +++C + S + + T RL +A P Sbjct: 1122 SCYNCGVSGHYAQDCKQ------SSMEANQQGTYRLRYAPPLPP 1159
>POU12_BRARE (P56224) POU domain protein 12 (POU domain protein zp-12) (Class| III POU domain protein taichi) (Brain-specific homeobox/POU domain protein 1.1) (Brn-1.1) Length = 437 Score = 30.4 bits (67), Expect = 2.5 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKHQLRV 107 HHHHH Q+ P HHH +H V Sbjct: 212 HHHHHQQQHP---HHHHHQHHAGV 232
>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 899 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 372 SCYNCGEPGHISRECTK*GDLCPSPLYRRRLNTSRLSFADRSQP 241 SCYNCG GH +++C + S + + T RL +A P Sbjct: 853 SCYNCGVSGHYAQDCKQ------SSMEANQQGTYRLRYAPPLPP 890
>GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 498 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/51 (27%), Positives = 19/51 (37%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G PGH AR + C+NCG+ GHI++ C Sbjct: 353 GGPGHKARVLAEAMSQVNSVTVMMQKGNFKNQRKTVKCFNCGKEGHIAKNC 403
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+ GHIAR+C + C+ CG+ GH +ECT+ Sbjct: 395 GKEGHIARNCRAPRK--------------------KGCWKCGKEGHQMKECTE 427 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI+R C Sbjct: 391 CFNCGKEGHIARNC 404
>ZNUA_YERPE (Q8ZEU2) High-affinity zinc uptake system protein znuA precursor| Length = 318 Score = 30.0 bits (66), Expect = 3.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 27 QSPHHHHHTQKSPTIIHHH 83 +S HHH H + +PT HHH Sbjct: 129 ESGHHHDHAKDNPTDDHHH 147
>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 30.0 bits (66), Expect = 3.3 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NC +PGH++R+C Sbjct: 377 CFNCKKPGHLARQC 390 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/54 (25%), Positives = 22/54 (40%) Frame = -2 Query: 477 EPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*G 316 +PGH+AR C + C CG+PGH++ +C + G Sbjct: 382 KPGHLARQCRDV----------------------KKCNKCGKPGHLAAKCWQGG 413
>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 30.0 bits (66), Expect = 3.3 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NC +PGH++R+C Sbjct: 377 CFNCKKPGHLARQC 390 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/50 (26%), Positives = 20/50 (40%) Frame = -2 Query: 477 EPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 +PGH+AR C + C CG+PGH++ +C Sbjct: 382 KPGHLARQCREV----------------------KKCNKCGKPGHLAAKC 409
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 30.0 bits (66), Expect = 3.3 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = +3 Query: 33 PHHHHHTQKSPTIIHHH 83 PHHHHH P HHH Sbjct: 1009 PHHHHHHAPPPQPHHHH 1025
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 30.0 bits (66), Expect = 3.3 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = +3 Query: 33 PHHHHHTQKSPTIIHHH 83 PHHHHH P HHH Sbjct: 1001 PHHHHHHAPPPQPHHHH 1017
>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 714 Score = 30.0 bits (66), Expect = 3.3 Identities = 12/25 (48%), Positives = 12/25 (48%) Frame = +3 Query: 27 QSPHHHHHTQKSPTIIHHHDLKHQL 101 Q H H H Q P HHH HQL Sbjct: 121 QRKHQHTHHQNKPQHYHHHHHHHQL 145
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI+R C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/53 (26%), Positives = 22/53 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+ GHIAR+C + C+ CG+ GH ++CT+ Sbjct: 395 GKEGHIARNCRAPRK--------------------KGCWKCGKEGHQMKDCTE 427
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI+R C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.6 bits (65), Expect = 4.3 Identities = 14/53 (26%), Positives = 22/53 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+ GHIAR+C + C+ CG+ GH ++CT+ Sbjct: 395 GKEGHIARNCKAPRK--------------------KGCWKCGKEGHQMKDCTE 427
>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 549 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI+R C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/53 (26%), Positives = 21/53 (39%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+ GHIAR+C + C+ CG GH ++CT+ Sbjct: 395 GKEGHIARNCKAPRK--------------------KGCWKCGREGHQMKDCTE 427
>ADA2C_DIDMA (P35405) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)| (Alpha-2C adrenoreceptor) Length = 469 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = +3 Query: 36 HHHHHTQKSPTIIHHHDLKHQLRVRVPVPD 125 HHHHH HHH HQLR + D Sbjct: 279 HHHHHLHH-----HHHHHHHQLRKSAELED 303
>GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 29.6 bits (65), Expect = 4.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NC PGH++R+C Sbjct: 377 CFNCKRPGHLARQC 390 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/53 (26%), Positives = 21/53 (39%) Frame = -2 Query: 474 PGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*G 316 PGH+AR C + C CG+PGH++ +C + G Sbjct: 383 PGHLARQCRDV----------------------KKCNKCGKPGHLAAKCWQGG 413
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 520 Score = 29.6 bits (65), Expect = 4.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ R+C Sbjct: 400 CYNCGKFGHMQRQC 413 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/51 (25%), Positives = 20/51 (39%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+ GH+ R CP C CG+PGH++++C Sbjct: 404 GKFGHMQRQCPEPRKI--------------------KCLKCGKPGHLAKDC 434
>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.6 bits (65), Expect = 4.3 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 5/100 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK-----*G 316 G+ GHIA++C + C+ CG+ GH ++CT+ G Sbjct: 395 GKEGHIAKNCRAPRK--------------------KGCWKCGKEGHQMKDCTERQANFLG 434 Query: 315 DLCPSPLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPS 196 + PS ++ R S + + PP F PS Sbjct: 435 KIWPS--HKGRPGNFLQSRPEPTAPPEESFRFGEETTTPS 472 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 391 CFNCGKEGHIAKNC 404
>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 29.6 bits (65), Expect = 4.3 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -2 Query: 378 DRSCYNCGEPGHISRECTK 322 ++ C+ CG+ GH SR+CT+ Sbjct: 354 NQPCFRCGKAGHWSRDCTQ 372
>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 29.6 bits (65), Expect = 4.3 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -2 Query: 378 DRSCYNCGEPGHISRECTK 322 ++ C+ CG+ GH SR+CT+ Sbjct: 354 NQPCFRCGKAGHWSRDCTQ 372
>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 949 Score = 29.6 bits (65), Expect = 4.3 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 372 SCYNCGEPGHISRECTK*GDLCPSPLYRRRLNTSRLSFA 256 SCYNCG GH +++C + PS + R T RL +A Sbjct: 907 SCYNCGATGHRAQDCKQ-----PSMDFNRP-GTFRLKYA 939
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 29.6 bits (65), Expect = 4.3 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 10/69 (14%) Frame = -2 Query: 369 CYNCGEPGHISRECTK------*GDLCPSPL----YRRRLNTSRLSFADRSQPPRSLFYL 220 CY CG GH S+EC + G PSPL YR R+ + PP Sbjct: 170 CYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRM------YGRDPYPP------ 217 Query: 219 APSPPLPSL 193 P PP P L Sbjct: 218 -PPPPPPFL 225
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 29.6 bits (65), Expect = 4.3 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = -2 Query: 369 CYNCGEPGHISRECTK 322 CY CG PGH +C K Sbjct: 509 CYTCGSPGHYQAQCPK 524
>ADF1_CANAL (P46589) Adherence factor (Adhesion and aggregation mediating| surface antigen) Length = 612 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 24 LQSPHHHHHTQKSPTIIHHHDLKHQLRVRVP 116 L S HHH+ Q+ P +IHHH + Q + P Sbjct: 552 LHSNQHHHNHQQHP-LIHHHQYQQQSSLPPP 581
>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 428 Score = 29.6 bits (65), Expect = 4.3 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -2 Query: 378 DRSCYNCGEPGHISRECTK 322 ++ C+ CG+ GH SR+CT+ Sbjct: 353 NQPCFRCGKAGHWSRDCTQ 371
>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 519 Score = 29.6 bits (65), Expect = 4.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ R+C Sbjct: 399 CYNCGKFGHMQRQC 412
>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 521 Score = 29.6 bits (65), Expect = 4.3 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ R+C Sbjct: 404 CYNCGKFGHMQRQC 417 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/51 (25%), Positives = 20/51 (39%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISREC 328 G+ GH+ R CP C CG+PGH++++C Sbjct: 408 GKFGHMQRQCPEPRKMR--------------------CLKCGKPGHLAKDC 438
>POST_XENLA (P27536) Posterior protein (xPO)| Length = 555 Score = 29.6 bits (65), Expect = 4.3 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 R CY+CG+ GHI+R C Sbjct: 413 RKCYSCGKYGHIARFC 428
>FA84A_BOVIN (Q3ZCA1) Protein FAM84A| Length = 297 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +3 Query: 30 SPHHHHHTQKSPTIIHHHDLKHQL 101 S HHHHH HHH L HQL Sbjct: 69 SRHHHHH--------HHHHLLHQL 84
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein| p25; Core protein p16] Length = 508 Score = 29.3 bits (64), Expect = 5.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GH++R C Sbjct: 402 CFNCGKEGHLARNC 415 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/52 (25%), Positives = 21/52 (40%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECT 325 G+ GH+AR+C + C+ CG+ GH ++CT Sbjct: 406 GKEGHLARNCKAPRR--------------------KGCWRCGQEGHQMKDCT 437
>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11| Length = 1644 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Frame = -2 Query: 378 DRSCYNCGEPGHISREC-------TK*GDLCPSPLYRRRLNTSRLSFADRSQPPRSL 229 D C+ CG+ GH+ REC + + + L R +N +++ + + Q +S+ Sbjct: 1356 DLRCFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRNLVNAQQVAGSAQQQGDQSI 1412
>KAD_CLOAB (Q97EJ9) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 215 Score = 29.3 bits (64), Expect = 5.6 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Frame = -2 Query: 375 RSCYNCGEPGHISRECTK*G---DLCPSPLYRRRLNT-----SRLSFADRSQPPRSLFY 223 R C CG HI TK DLC SP+ +R+ ++ RL DR P ++Y Sbjct: 128 RVCSKCGASYHIEYNPTKVEGICDLCGSPVVQRKDDSEDTVKERLDVYDRQTEPLVVYY 186
>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 29.3 bits (64), Expect = 5.6 Identities = 21/102 (20%), Positives = 35/102 (34%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*GDLCPS 301 G+ GH AR+C + C+ CG+ GH ++CT+ Sbjct: 395 GKEGHTARNCRAPRK--------------------KGCWKCGKEGHQMKDCTE------- 427 Query: 300 PLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPSLGEARPK 175 R+ N + P + P P P ++RP+ Sbjct: 428 ----RQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPE 465
>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 29.3 bits (64), Expect = 5.6 Identities = 21/102 (20%), Positives = 35/102 (34%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK*GDLCPS 301 G+ GH AR+C + C+ CG+ GH ++CT+ Sbjct: 395 GKEGHTARNCRAPRK--------------------KGCWKCGKEGHQMKDCTE------- 427 Query: 300 PLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPSLGEARPK 175 R+ N + P + P P P ++RP+ Sbjct: 428 ----RQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPE 465
>RCOR2_RAT (Q5FWT8) REST corepressor 2| Length = 523 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/38 (44%), Positives = 18/38 (47%) Frame = -2 Query: 306 PSPLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPSL 193 P PL R L SR S QPP +L PP PSL Sbjct: 486 PPPLIRPALAASRHSARPGPQPPPTLVGAQLEPPAPSL 523
>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)| Length = 523 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/38 (44%), Positives = 18/38 (47%) Frame = -2 Query: 306 PSPLYRRRLNTSRLSFADRSQPPRSLFYLAPSPPLPSL 193 P PL R L SR S QPP +L PP PSL Sbjct: 486 PPPLIRPALAASRHSARPGPQPPPTLVGAPLEPPAPSL 523
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 29.3 bits (64), Expect = 5.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GH++R C Sbjct: 391 CFNCGKEGHLARNC 404
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.3 bits (64), Expect = 5.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GH++R C Sbjct: 391 CFNCGKEGHLARNC 404
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 29.3 bits (64), Expect = 5.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GH++R C Sbjct: 397 CFNCGKEGHLARNC 410 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/53 (24%), Positives = 22/53 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+ GH+AR+C + C+ CG+ GH ++CT+ Sbjct: 401 GKEGHLARNCRAPRK--------------------KGCWKCGKEGHQMKDCTE 433
>SKI2_YEAST (P35207) Antiviral helicase SKI2 (EC 3.6.1.-)| Length = 1287 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/57 (29%), Positives = 23/57 (40%) Frame = +2 Query: 179 GRASPKDGRGGEGAR*NKLRGGCDRSAKXXXXXXXXXXXXXXXQRSPHLVHSREMWP 349 G ++ +DGRGG G N RGG +R Q P S++ WP Sbjct: 566 GGSNTRDGRGGRG---NSTRGGANRGGSRGAGAIGSNKRKFFTQDGP----SKKTWP 615
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 29.3 bits (64), Expect = 5.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -2 Query: 372 SCYNCGEPGHISRECTK*GD 313 +C+ CG+PGH + C GD Sbjct: 161 TCFRCGKPGHYIKNCPTNGD 180
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 29.3 bits (64), Expect = 5.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -2 Query: 372 SCYNCGEPGHISRECTK*GD 313 +C+ CG+PGH + C GD Sbjct: 160 TCFRCGKPGHYIKNCPTNGD 179
>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1440 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/53 (26%), Positives = 22/53 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+ GHIA++C R C+ CG+ GH ++CT+ Sbjct: 398 GKEGHIAKNCRAPRK--------------------RGCWKCGKEGHQMKDCTE 430 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 394 CFNCGKEGHIAKNC 407
>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 513 Score = 29.3 bits (64), Expect = 5.6 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GH+ REC Sbjct: 392 CFNCGKFGHMQREC 405
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 29.3 bits (64), Expect = 5.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GH++R C Sbjct: 397 CFNCGKEGHLARNC 410 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/53 (24%), Positives = 22/53 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+ GH+AR+C + C+ CG+ GH ++CT+ Sbjct: 401 GKEGHLARNCRAPRK--------------------KGCWKCGKEGHQMKDCTE 433
>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 506 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/53 (26%), Positives = 22/53 (41%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK 322 G+ GHIA++C R C+ CG+ GH ++CT+ Sbjct: 398 GKEGHIAKNCRAPRK--------------------RGCWKCGKEGHQMKDCTE 430 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 394 CFNCGKEGHIAKNC 407
>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1464 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = -2 Query: 372 SCYNCGEPGHISREC 328 +C+NCG+ GH +R+C Sbjct: 388 TCWNCGKQGHTARQC 402
>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K115 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 646 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ + C Sbjct: 545 CYNCGQIGHLKKNC 558
>GAG_IPHA (P04023) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 572 Score = 28.9 bits (63), Expect = 7.3 Identities = 7/16 (43%), Positives = 13/16 (81%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 ++C+NCG GH+ ++C Sbjct: 447 KACFNCGRMGHLKKDC 462
>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 391 CFNCGKEGHIAKNC 404
>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 28.9 bits (63), Expect = 7.3 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Frame = -2 Query: 480 GEPGHIARDCPTSSXXXXXXXXXXXXXXXXXXXGDRSCYNCGEPGHISRECTK-----*G 316 G+ GH AR+C + C+ CG+ GH ++CT+ G Sbjct: 395 GKEGHTARNCRAPRK--------------------KGCWKCGKEGHQMKDCTERQANFLG 434 Query: 315 DLCPSPLYRRRLNTSRLSFADRSQPPRSLF 226 + PS Y+ R S + + PP F Sbjct: 435 KIWPS--YKGRPGNFLQSRPEPTAPPEESF 462
>GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 392 CFNCGKEGHIAKNC 405
>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core| protein p24; Core protein p12 (p15)] Length = 432 Score = 28.9 bits (63), Expect = 7.3 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -2 Query: 369 CYNCGEPGHISRECTK 322 C+ CG+ GH SR+CT+ Sbjct: 362 CFRCGKVGHWSRDCTQ 377
>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = -2 Query: 372 SCYNCGEPGHISREC 328 +C+NCG+ GH +R+C Sbjct: 388 TCWNCGKQGHTARQC 402
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 28.9 bits (63), Expect = 7.3 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CY CG+ GH S+EC Sbjct: 162 CYRCGQEGHWSKEC 175
>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K113 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ + C Sbjct: 545 CYNCGQIGHLKKNC 558
>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ + C Sbjct: 545 CYNCGQIGHLKKNC 558
>GAK3_HUMAN (Q9YNA8) HERV-K_19q12 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(C19) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ + C Sbjct: 545 CYNCGQIGHLKKNC 558
>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ + C Sbjct: 545 CYNCGQIGHLKKNC 558
>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ + C Sbjct: 545 CYNCGQIGHLKKNC 558
>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K101 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ + C Sbjct: 545 CYNCGQIGHLKKNC 558
>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CYNCG+ GH+ + C Sbjct: 545 CYNCGQIGHLKKNC 558
>CCG8_NEUCR (Q01306) Clock-controlled protein 8| Length = 661 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Frame = +3 Query: 27 QSPHHHHH---TQKSPTIIHHHDLKHQLRVRVPVPDQ 128 Q P HH H Q HHH + Q + VPVP Q Sbjct: 28 QPPQHHQHYEAPQHQQQHQHHHHQQQQQQHPVPVPKQ 64
>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1436 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 393 CFNCGKEGHIAKNC 406
>POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 393 CFNCGKEGHIAKNC 406
>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 391 CFNCGKEGHIAKNC 404
>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 391 CFNCGKEGHIAKNC 404
>POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 392 CFNCGKEGHIAKNC 405
>GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 28.9 bits (63), Expect = 7.3 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 393 CFNCGKEGHIAKNC 406
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CY CG+ GH S+EC Sbjct: 162 CYRCGKEGHWSKEC 175
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CY CG+ GH S+EC Sbjct: 162 CYRCGKEGHWSKEC 175
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CY CG+ GH S+EC Sbjct: 162 CYRCGKEGHWSKEC 175
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -2 Query: 369 CYNCGEPGHISRECTK*GDLCPSPLYRRRLNTSRLSFADRSQPPR 235 CY CGE GH + +C + RRR + SR RS+ R Sbjct: 106 CYECGEKGHYAYDCHR--------YSRRRRSRSRSRSHSRSRGRR 142
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -2 Query: 369 CYNCGEPGHISRECTK*GDLCPSPLYRRRLNTSRLSFADRSQPPR 235 CY CGE GH + +C + RRR + SR RS+ R Sbjct: 135 CYECGEKGHYAYDCHR--------YSRRRRSRSRSRSHSRSRGRR 171
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CY CG+ GH S+EC Sbjct: 162 CYRCGKEGHWSKEC 175
>GLH3_CAEEL (O01836) ATP-dependent RNA helicase glh-3 (EC 3.6.1.-) (Germline| helicase 3) Length = 720 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 375 RSCYNCGEPGHISREC 328 R C NCG+P H + EC Sbjct: 222 RECANCGDPNHRANEC 237
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CY CG+ GH S+EC Sbjct: 162 CYRCGKEGHWSKEC 175
>ZCHC8_XENLA (Q6DD45) Zinc finger CCHC domain-containing protein 8| Length = 743 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/39 (33%), Positives = 17/39 (43%) Frame = -2 Query: 369 CYNCGEPGHISRECTK*GDLCPSPLYRRRLNTSRLSFAD 253 C+NCG H R+ CP P + +N R F D Sbjct: 215 CFNCGSEEHQMRD-------CPKPRDQAHINMKRKEFLD 246
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CY CG+ GH S+EC Sbjct: 162 CYRCGKEGHWSKEC 175
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 CY CG+ GH S+EC Sbjct: 162 CYRCGKEGHWSKEC 175
>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated| protein pp21; Protein p3; Protein p8; Protein n; Major core protein p27; Nucleic acid-binding protein p14] Length = 590 Score = 28.5 bits (62), Expect = 9.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C++CG+ GHI R+C Sbjct: 526 CFSCGKTGHIKRDC 539
>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 28.5 bits (62), Expect = 9.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 391 CFNCGKVGHIAKNC 404
>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 28.5 bits (62), Expect = 9.6 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -2 Query: 369 CYNCGEPGHISREC 328 C+NCG+ GHI++ C Sbjct: 391 CFNCGKVGHIAKNC 404 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,798,125 Number of Sequences: 219361 Number of extensions: 734249 Number of successful extensions: 3535 Number of sequences better than 10.0: 127 Number of HSP's better than 10.0 without gapping: 2381 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3219 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
