ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN434_HUMAN (Q9NX65) Zinc finger protein 434 31 1.6
2PLVAP_MOUSE (Q91VC4) Plasmalemma vesicle-associated protein (Pla... 28 7.7

>ZN434_HUMAN (Q9NX65) Zinc finger protein 434|
          Length = 485

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +1

Query: 151 SRLYKARSGHPRDTRERQCHDDRIHQSDK*PSQEAIKRK----RPAACTRRHCGDPC 309
           S L K     P  T  RQC +      +K PSQE +  +    R  ACT   CG  C
Sbjct: 237 SELQKGLESEP--TSRRQCRNSPGESEEKTPSQEKMSHQSFCARDKACTHILCGKNC 291



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>PLVAP_MOUSE (Q91VC4) Plasmalemma vesicle-associated protein (Plasmalemma|
           vesicle protein 1) (PV-1) (MECA-32 antigen)
          Length = 438

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 103 DQQEGCVYFFSSLILWQTIIYVTDYYGVIYFILY 2
           DQQ GC Y+     L+ ++I      G++ F++Y
Sbjct: 15  DQQRGCWYYLRYFFLFVSLIQFLIILGLVLFMIY 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,468,586
Number of Sequences: 219361
Number of extensions: 664554
Number of successful extensions: 1289
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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