ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ865033.1| Hordeum vulgare subsp. vulgare transposon MITE A... 133 5e-28
2emb|AJ865032.1| Hordeum vulgare subsp. vulgare transposon MITE A... 127 3e-26
3emb|AJ865031.1| Hordeum vulgare subsp. vulgare transposon MITE A... 111 2e-21
4emb|AJ865030.1| Hordeum vulgare subsp. vulgare transposon MITE A... 111 2e-21
5gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
7emb|AJ865036.1| Hordeum vulgare subsp. vulgare transposon MITE A... 92 2e-15
8emb|AJ865037.1| Hordeum vulgare subsp. vulgare transposon MITE A... 84 4e-13
9emb|AJ865035.1| Hordeum vulgare subsp. vulgare transposon MITE A... 84 4e-13
10emb|AJ865034.1| Hordeum vulgare subsp. vulgare transposon MITE A... 82 2e-12
11emb|AJ865029.1| Hordeum vulgare subsp. vulgare transposon MITE A... 70 6e-09
12gb|AC150244.2| Medicago truncatula chromosome 7 BAC clone mth2-1... 62 1e-06
13gb|AC172101.1| Medicago truncatula chromosome 7 BAC clone mth2-2... 62 1e-06
14gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex sub... 60 6e-06
15emb|AJ865074.1| Hordeum vulgare subsp. vulgare transposon MITE A... 50 0.006
16emb|AJ865073.1| Hordeum vulgare subsp. vulgare transposon MITE A... 50 0.006
17emb|AJ865072.1| Hordeum vulgare subsp. vulgare transposon MITE A... 50 0.006
18ref|NM_121449.2| Arabidopsis thaliana carboxylic ester hydrolase... 48 0.022
19ref|NM_202300.1| Arabidopsis thaliana carboxylic ester hydrolase... 48 0.022
20ref|NM_104354.2| Arabidopsis thaliana carboxylic ester hydrolase... 48 0.022
21emb|AL163817.1|ATF18O22 Arabidopsis thaliana DNA chromosome 5, B... 48 0.022
22gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis tha... 48 0.022
23emb|BX829933.1|CNS0A09G Arabidopsis thaliana Full-length cDNA Co... 48 0.022
24emb|BX833039.1|CNS09Z2Y Arabidopsis thaliana Full-length cDNA Co... 48 0.022
25emb|BX842537.1|CNS0ADRM Arabidopsis thaliana Full-length cDNA Co... 48 0.022
26gb|BT005698.1| Arabidopsis thaliana clone U51001 putative early ... 48 0.022
27gb|BT005338.1| Arabidopsis thaliana At5g14450 mRNA, complete cds 48 0.022
28gb|AY084964.1| Arabidopsis thaliana clone 122943 mRNA, complete ... 48 0.022
29dbj|AK118393.1| Arabidopsis thaliana At5g14450 mRNA for putative... 48 0.022
30dbj|AK118209.1| Arabidopsis thaliana At1g54790 mRNA for unknown ... 48 0.022
31dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.088
32dbj|AP004547.1| Lotus japonicus genomic DNA, chromosome 6, clone... 46 0.088
33gb|AC182673.2| Populus trichocarpa clone Pop1-26A1, complete seq... 44 0.35
34gb|AF544118.1| Zea mays subsp. mays cultivar Ki9 endosperm-speci... 44 0.35
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
36emb|BX822265.1|CNS0A756 Arabidopsis thaliana Full-length cDNA Co... 42 1.4
37dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
38gb|AY555142.1| Zea mays BAC clone c573F08, complete sequence 42 1.4
39gb|AY840978.1| Tupaia rhabdovirus, complete genome 40 5.4
40gb|AC084158.2| Caenorhabditis elegans cosmid Y69A2AR, complete s... 40 5.4
41gb|AC161056.5| Mus musculus BAC clone RP23-241J7 from chromosome... 40 5.4
42ref|NM_067810.3| Caenorhabditis elegans Y69A2AR.19 (Y69A2AR.19) ... 40 5.4
43gb|AC123878.4| Mus musculus BAC clone RP23-318I20 from 3, comple... 40 5.4 
>emb|AJ865033.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7E02
          Length = 135

 Score =  133 bits (67), Expect = 5e-28
 Identities = 112/127 (88%)
 Strand = Plus / Plus

                                                                       
Query: 91  aggcctcgttcgttcgacagggatttagaaggggtttggcagggattgaggtggatataa 150
           |||||| ||||| | ||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct: 3   aggccttgttcggttgacagggatatagaaggggtttgacagggattgagatggatataa 62

                                                                       
Query: 151 tcccctacaagtcatattccaccctaatccccttcaatcctcttgagaagaggtggaacc 210
           |||||||||||||| |   ||||  |||||||| ||||||||||||||||||||| ||||
Sbjct: 63  tcccctacaagtcaaaactcaccacaatcccctccaatcctcttgagaagaggtgtaacc 122

                  
Query: 211 gaacaag 217
            ||||||
Sbjct: 123 caacaag 129
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>emb|AJ865032.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7D07
          Length = 135

 Score =  127 bits (64), Expect = 3e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                       
Query: 106 gacagggatttagaaggggtttggcagggattgaggtggatataatcccctacaagtcat 165
           ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 18  gacagggatatagaaggggtttgacagggattgagatggatataatcccctacaagtcaa 77

                                                               
Query: 166 attccaccctaatccccttcaatcctcttgagaagaggtggaaccgaacaag 217
           |   ||||  |||||||| ||||||||||||||||||||| |||| ||||||
Sbjct: 78  aactcaccacaatcccctccaatcctcttgagaagaggtgtaacccaacaag 129
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>emb|AJ865031.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7E01
          Length = 134

 Score =  111 bits (56), Expect = 2e-21
 Identities = 96/108 (88%), Gaps = 1/108 (0%)
 Strand = Plus / Plus

                                                                       
Query: 110 gggatttagaaggggtttggcagggattgaggtggatataatcccctacaagtcatattc 169
           ||||||||| |||||||||  |||||||||||||||||||||||| ||||||| | | ||
Sbjct: 22  gggatttaggaggggtttgatagggattgaggtggatataatccc-tacaagttaaaatc 80

                                                           
Query: 170 caccctaatccccttcaatcctcttgagaagaggtggaaccgaacaag 217
           ||||| | || ||| ||||||||||||||||||||| |||||||||||
Sbjct: 81  caccccagtctcctccaatcctcttgagaagaggtgtaaccgaacaag 128
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>emb|AJ865030.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7E03
          Length = 134

 Score =  111 bits (56), Expect = 2e-21
 Identities = 96/108 (88%), Gaps = 1/108 (0%)
 Strand = Plus / Plus

                                                                       
Query: 110 gggatttagaaggggtttggcagggattgaggtggatataatcccctacaagtcatattc 169
           ||||||||| |||||||||  |||||||||||||||||||||||| ||||||| | | ||
Sbjct: 22  gggatttaggaggggtttgatagggattgaggtggatataatccc-tacaagttaaaatc 80

                                                           
Query: 170 caccctaatccccttcaatcctcttgagaagaggtggaaccgaacaag 217
           ||||| | || ||| ||||||||||||||||||||| |||||||||||
Sbjct: 81  caccccagtctcctccaatcctcttgagaagaggtgtaaccgaacaag 128
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>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0035J16, complete sequence
          Length = 170233

 Score =  101 bits (51), Expect = 2e-18
 Identities = 114/135 (84%)
 Strand = Plus / Minus

                                                                         
Query: 240   gctcattagaacctcggttttataaggaatggcatcctgtcggcgaacggaggatctgag 299
             |||||||||||| |||||||||| || ||||||||| |||| || || ||||| || |||
Sbjct: 66172 gctcattagaacttcggttttatgagaaatggcatcttgtcagcaaatggagggtcagag 66113

                                                                         
Query: 300   tatttcccagtcagaatctgcgatgtaacgtggaaatttgcagcttccgtataatgaatt 359
             ||| |||| || || |||||||| |  | ||||||||| |||||||| || ||||| |||
Sbjct: 66112 tatctccctgtaaggatctgcgacgcgatgtggaaattcgcagcttctgtgtaatggatt 66053

                            
Query: 360   ccatcccaattgaca 374
             |||||||||||||||
Sbjct: 66052 ccatcccaattgaca 66038
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  101 bits (51), Expect = 2e-18
 Identities = 114/135 (84%)
 Strand = Plus / Minus

                                                                            
Query: 240      gctcattagaacctcggttttataaggaatggcatcctgtcggcgaacggaggatctgag 299
                |||||||||||| |||||||||| || ||||||||| |||| || || ||||| || |||
Sbjct: 19362823 gctcattagaacttcggttttatgagaaatggcatcttgtcagcaaatggagggtcagag 19362764

                                                                            
Query: 300      tatttcccagtcagaatctgcgatgtaacgtggaaatttgcagcttccgtataatgaatt 359
                ||| |||| || || |||||||| |  | ||||||||| |||||||| || ||||| |||
Sbjct: 19362763 tatctccctgtaaggatctgcgacgcgatgtggaaattcgcagcttctgtgtaatggatt 19362704

                               
Query: 360      ccatcccaattgaca 374
                |||||||||||||||
Sbjct: 19362703 ccatcccaattgaca 19362689
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>emb|AJ865036.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7B05
          Length = 133

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 97/113 (85%), Gaps = 2/113 (1%)
 Strand = Plus / Plus

                                                                       
Query: 106 gacagggatttagaaggggtttggcagggattgaggtggatataatcccctacaagtcat 165
           |||||||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||| 
Sbjct: 18  gacagggatttagagggggtttgacagggattaaggtggatgtaatctcctacaagtcaa 77

                                                                
Query: 166 attccaccctaatccccttcaatcctcttgagaagaggtggaaccgaacaagg 218
           | ||||  | ||||||||||||||||  ||| |||  ||| ||||||||||||
Sbjct: 78  aatccattccaatccccttcaatccttctgaaaag--gtgtaaccgaacaagg 128
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>emb|AJ865037.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7A04
          Length = 133

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                       
Query: 106 gacagggatttagaaggggtttggcagggattgaggtggatataatcccctacaagtcat 165
           |||| ||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||| 
Sbjct: 18  gacatggatttagagggggtttgacagggattaaggtggatgtaatctcctacaagtcaa 77

                                     
Query: 166 attccaccctaatccccttcaatcct 191
           | ||||  | ||||||||||||||||
Sbjct: 78  aatccattccaatccccttcaatcct 103
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>emb|AJ865035.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7D06
          Length = 133

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 96/113 (84%), Gaps = 2/113 (1%)
 Strand = Plus / Plus

                                                                       
Query: 106 gacagggatttagaaggggtttggcagggattgaggtggatataatcccctacaagtcat 165
           |||| ||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||| 
Sbjct: 18  gacatggatttagagggggtttgacagggattaaggtggatgtaatctcctacaagtcaa 77

                                                                
Query: 166 attccaccctaatccccttcaatcctcttgagaagaggtggaaccgaacaagg 218
           | ||||  | ||||||||||||||||  ||| |||  ||| ||||||||||||
Sbjct: 78  aatccattccaatccccttcaatccttctgaaaag--gtgtaaccgaacaagg 128
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>emb|AJ865034.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7D10
          Length = 135

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 89/105 (84%)
 Strand = Plus / Plus

                                                                       
Query: 113 atttagaaggggtttggcagggattgaggtggatataatcccctacaagtcatattccac 172
           |||||| ||||||||| || |||||||||||| ||||| ||| || |||||| | |||| 
Sbjct: 25  atttaggaggggtttgacatggattgaggtgggtataaacccttagaagtcaaaatccat 84

                                                        
Query: 173 cctaatccccttcaatcctcttgagaagaggtggaaccgaacaag 217
           || ||| ||||  |||||||||||||||||||| |||| ||||||
Sbjct: 85  cccaattccctctaatcctcttgagaagaggtgtaacccaacaag 129
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>emb|AJ865029.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7F06
          Length = 168

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 110 gggatttagaaggggtttggcagggattgaggtggatataatcccctacaagtca 164
           ||||||||| |||||||||  ||||||||||||||||||||| ||||| ||||||
Sbjct: 65  gggatttaggaggggtttgatagggattgaggtggatataatgccctataagtca 119



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 185 caatcctcttgagaagaggtggaaccgaacaag 217
           ||||||||||||||||||||| |||||||||||
Sbjct: 130 caatcctcttgagaagaggtgtaaccgaacaag 162



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 110 gggatttagaaggggtttggcagggattgaggt 142
           ||||||||| |||||||||  ||||||||||||
Sbjct: 22  gggatttaggaggggtttgatagggattgaggt 54
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>gb|AC150244.2| Medicago truncatula chromosome 7 BAC clone mth2-180p14, complete
            sequence
          Length = 115289

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                        
Query: 263  aaggaatggcatcctgtcggcgaacggaggatctgagtatttcccagtcagaatctgcga 322
            |||||||||||| ||||| | ||| ||||| || |||||||| ||||| |||||||| ||
Sbjct: 9627 aaggaatggcattctgtctgagaaaggagggtcagagtattttccagtgagaatctgtga 9568

                                                                       
Query: 323  tgtaacgtggaaatttgcagcttccgtataatgaattccatcccaattgacatactcag 381
            || ||| |    ||||||||  || || ||||||||||| ||||| |||| ||||||||
Sbjct: 9567 tgcaacatattgatttgcagtctcagtgtaatgaattccgtcccagttgatatactcag 9509
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>gb|AC172101.1| Medicago truncatula chromosome 7 BAC clone mth2-29f3, complete sequence
          Length = 88313

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                         
Query: 263   aaggaatggcatcctgtcggcgaacggaggatctgagtatttcccagtcagaatctgcga 322
             |||||||||||| ||||| | ||| ||||| || |||||||| ||||| |||||||| ||
Sbjct: 87799 aaggaatggcattctgtctgagaaaggagggtcagagtattttccagtgagaatctgtga 87740

                                                                        
Query: 323   tgtaacgtggaaatttgcagcttccgtataatgaattccatcccaattgacatactcag 381
             || ||| |    ||||||||  || || ||||||||||| ||||| |||| ||||||||
Sbjct: 87739 tgcaacatattgatttgcagtctcagtgtaatgaattccgtcccagttgatatactcag 87681
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>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098 cyclic
            nucleotide-gated ion channel 4 (Nec1) gene, complete cds
          Length = 9090

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                          
Query: 149  aatcccctacaagtcatattccaccctaatccccttcaatcctctt 194
            ||||||||||||||||| || ||||  |||||||||||||||||||
Sbjct: 3729 aatcccctacaagtcatttttcacctcaatccccttcaatcctctt 3774
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>emb|AJ865074.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7C02
          Length = 258

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 118 gaaggggtttggcagggattgaggtggatataatcccctacaagtcatattccaccctaa 177
           ||||||||||||  ||||||| |  ||||  |||||||||||||| | ||| ||||  ||
Sbjct: 143 gaaggggtttggaggggattgggagggattaaatcccctacaagttaaatttcacctcaa 202

                            
Query: 178 tccccttcaatcctctt 194
           |||||| ||||||||||
Sbjct: 203 tcccctccaatcctctt 219
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>emb|AJ865073.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7A05
          Length = 258

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 118 gaaggggtttggcagggattgaggtggatataatcccctacaagtcatattccaccctaa 177
           ||||||||||||  ||||||| |  ||||  |||||||||||||| | ||| ||||  ||
Sbjct: 143 gaaggggtttggaggggattgggagggattaaatcccctacaagttaaatttcacctcaa 202

                            
Query: 178 tccccttcaatcctctt 194
           |||||| ||||||||||
Sbjct: 203 tcccctccaatcctctt 219
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>emb|AJ865072.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7B08
          Length = 258

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 118 gaaggggtttggcagggattgaggtggatataatcccctacaagtcatattccaccctaa 177
           ||||||||||||  ||||||| |  ||||  |||||||||||||| | ||| ||||  ||
Sbjct: 143 gaaggggtttggaggggattgggagggattaaatcccctacaagttaaatttcacctcaa 202

                            
Query: 178 tccccttcaatcctctt 194
           |||||| ||||||||||
Sbjct: 203 tcccctccaatcctctt 219
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>ref|NM_121449.2| Arabidopsis thaliana carboxylic ester hydrolase/ hydrolase, acting on
            ester bonds AT5G14450 mRNA, complete cds
          Length = 1358

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||||||||||||||| |||| |||||||||
Sbjct: 1135 tttgcagcttccgtatagtgaactccatccca 1104
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>ref|NM_202300.1| Arabidopsis thaliana carboxylic ester hydrolase/ hydrolase, acting on
            ester bonds AT1G54790 transcript variant AT1G54790.2
            mRNA, complete cds
          Length = 1669

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||| ||||| ||||||||||||||||||||
Sbjct: 1159 tttgcggcttcggtataatgaattccatccca 1128
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>ref|NM_104354.2| Arabidopsis thaliana carboxylic ester hydrolase/ hydrolase, acting on
            ester bonds AT1G54790 transcript variant AT1G54790.1
            mRNA, complete cds
          Length = 1600

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||| ||||| ||||||||||||||||||||
Sbjct: 1090 tttgcggcttcggtataatgaattccatccca 1059
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>emb|AL163817.1|ATF18O22 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project)
          Length = 100269

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 336   tttgcagcttccgtataatgaattccatccca 367
             ||||||||||||||||| |||| |||||||||
Sbjct: 78702 tttgcagcttccgtatagtgaactccatccca 78671
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>gb|AC005388.1|T22H22 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 87768

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 336   tttgcagcttccgtataatgaattccatccca 367
             ||||| ||||| ||||||||||||||||||||
Sbjct: 69727 tttgcggcttcggtataatgaattccatccca 69758
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>emb|BX829933.1|CNS0A09G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB47ZC12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 832

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 336 tttgcagcttccgtataatgaattccatccca 367
           ||||||||||||||||| |||| |||||||||
Sbjct: 649 tttgcagcttccgtatagtgaactccatccca 618
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>emb|BX833039.1|CNS09Z2Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL31ZB01 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1228

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||||||||||||||| |||| |||||||||
Sbjct: 1111 tttgcagcttccgtatagtgaactccatccca 1080
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>emb|BX842537.1|CNS0ADRM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB3ZA06 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1243

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||| ||||| ||||||||||||||||||||
Sbjct: 1159 tttgcggcttcggtataatgaattccatccca 1128
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>gb|BT005698.1| Arabidopsis thaliana clone U51001 putative early nodule-specific
            protein (At1g54790) mRNA, complete cds
          Length = 1165

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||| ||||| ||||||||||||||||||||
Sbjct: 1058 tttgcggcttcggtataatgaattccatccca 1027
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>gb|BT005338.1| Arabidopsis thaliana At5g14450 mRNA, complete cds
          Length = 1170

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||||||||||||||| |||| |||||||||
Sbjct: 1088 tttgcagcttccgtatagtgaactccatccca 1057
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>gb|AY084964.1| Arabidopsis thaliana clone 122943 mRNA, complete sequence
          Length = 1250

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||| ||||| ||||||||||||||||||||
Sbjct: 1090 tttgcggcttcggtataatgaattccatccca 1059
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>dbj|AK118393.1| Arabidopsis thaliana At5g14450 mRNA for putative early
            nodule-specific protein, complete cds, clone:
            RAFL19-65-G02
          Length = 1330

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||||||||||||||| |||| |||||||||
Sbjct: 1135 tttgcagcttccgtatagtgaactccatccca 1104
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>dbj|AK118209.1| Arabidopsis thaliana At1g54790 mRNA for unknown protein, complete
            cds, clone: RAFL19-52-I16
          Length = 1176

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 336  tttgcagcttccgtataatgaattccatccca 367
            ||||| ||||| ||||||||||||||||||||
Sbjct: 1069 tttgcggcttcggtataatgaattccatccca 1038
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>dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT44A10, TM0223,
            complete sequence
          Length = 101752

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                       
Query: 335  atttgcagcttccgtataatgaattccatcccaattgacatac 377
            |||||||||||| |||| |||  ||||||||||||| ||||||
Sbjct: 2146 atttgcagcttctgtatgatgggttccatcccaattcacatac 2188
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>dbj|AP004547.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT31L24, TM0228a,
             complete sequence
          Length = 65103

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 335   atttgcagcttccgtataatgaattccatcccaattgacatactcag 381
             |||||||||||| |||   ||||||||||||||||  ||||||||||
Sbjct: 57168 atttgcagcttctgtaccgtgaattccatcccaatacacatactcag 57122



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 336   tttgcagcttccgtataatgaattccatcccaa 368
             ||||||||||| ||| | |||||||||||||||
Sbjct: 50853 tttgcagcttctgtagagtgaattccatcccaa 50821
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>gb|AC182673.2| Populus trichocarpa clone Pop1-26A1, complete sequence
          Length = 80768

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 2     atgagaaaagaaactatatgtggtta 27
             ||||||||||||||||||| ||||||
Sbjct: 19273 atgagaaaagaaactatatctggtta 19248
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>gb|AF544118.1| Zea mays subsp. mays cultivar Ki9 endosperm-specific sucrose synthase
            (shrunken1) gene, partial sequence
          Length = 6724

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 131  agggattgaggtggatataatcccctacaagtca 164
            ||||||||||| ||||  ||||||||||||||||
Sbjct: 2525 agggattgagggggatcaaatcccctacaagtca 2558
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 176      aatccccttcaatcctcttga 196
                |||||||||||||||||||||
Sbjct: 31806547 aatccccttcaatcctcttga 31806527
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>emb|BX822265.1|CNS0A756 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB24ZB12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1371

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 335  atttgcagcttccgtataatgaattccatccca 367
            |||||||||||| ||||||||||| || |||||
Sbjct: 1243 atttgcagcttcagtataatgaatgccgtccca 1211
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>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1414_E05
          Length = 105222

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   aatccccttcaatcctcttga 196
             |||||||||||||||||||||
Sbjct: 84585 aatccccttcaatcctcttga 84565
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>gb|AY555142.1| Zea mays BAC clone c573F08, complete sequence
          Length = 181627

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 132   gggattgaggtggatataatcccctacaagtca 164
             |||||||||| ||||  ||||||||||||||||
Sbjct: 29465 gggattgagggggattgaatcccctacaagtca 29433
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>gb|AY840978.1| Tupaia rhabdovirus, complete genome
          Length = 11440

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  tttggcagggattgaggtgg 144
            ||||||||||||||||||||
Sbjct: 9546 tttggcagggattgaggtgg 9565
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>gb|AC084158.2| Caenorhabditis elegans cosmid Y69A2AR, complete sequence
          Length = 188616

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  tgagtatttcccagtcagaa 315
            ||||||||||||||||||||
Sbjct: 9351 tgagtatttcccagtcagaa 9370
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>gb|AC161056.5| Mus musculus BAC clone RP23-241J7 from chromosome 3, complete sequence
          Length = 226878

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ggatttagaaggggtttggc 130
             ||||||||||||||||||||
Sbjct: 46338 ggatttagaaggggtttggc 46319
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>ref|NM_067810.3| Caenorhabditis elegans Y69A2AR.19 (Y69A2AR.19) mRNA, complete cds
          Length = 3843

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  tgagtatttcccagtcagaa 315
            ||||||||||||||||||||
Sbjct: 3069 tgagtatttcccagtcagaa 3088
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>gb|AC123878.4| Mus musculus BAC clone RP23-318I20 from 3, complete sequence
          Length = 215121

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    ggatttagaaggggtttggc 130
              ||||||||||||||||||||
Sbjct: 160722 ggatttagaaggggtttggc 160741


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,269,177
Number of Sequences: 3902068
Number of extensions: 3269177
Number of successful extensions: 52602
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52499
Number of HSP's gapped (non-prelim): 97
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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