ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart18c07 |
|---|---|
| Clone Library Name | barley_pub |
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 33.9 bits (76), Expect = 0.25 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +1 Query: 151 HPPPIRASHYLRLYTITPTTQLSRKTIPAPAKHLLFQWSVL 273 HPP R + +LRLY + P T S K +P A++ F W+ L Sbjct: 588 HPPGGRDAFHLRLYRLRPLTLESEKVLPREAQN--FSWAQL 626
>DRD5L_FUGRU (P53454) D(5)-like dopamine receptor| Length = 463 Score = 30.4 bits (67), Expect = 2.7 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = -3 Query: 488 KKPNANANPRRMMAPLQPSKGAGGPGADALSILTRDGDSRGPRARYQSIV*EADDEDKL 312 K+P R++APL ++G GP D +S+++ DSR R + + D E ++ Sbjct: 379 KEPVPGPGAHRLVAPLPQNRGDAGPNFDKVSVVS--DDSRADRNLLLPAILQCDCEAEI 435
>EBI2_HUMAN (P32249) EBV-induced G-protein coupled receptor 2 (EBI2)| Length = 361 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 321 FVVCLSHDRLVAGPRAPRVAIPCEYTESISARASSSFAWLQRRHHSSGICICVWFL 488 F+ CLS DR +A V P Y + ++R H+ G+CI VW L Sbjct: 121 FMTCLSIDRFIA------VVHPLRYNK------------IKRIEHAKGVCIFVWIL 158
>PTPRV_MOUSE (P70289) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) Length = 1705 Score = 29.3 bits (64), Expect = 6.1 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +1 Query: 151 HPPPIRASHYLRLYTITPTTQLSRKTIPAPAKHLLFQWSVL 273 HPP R + LRLY + P T S K + A++ F W+ L Sbjct: 588 HPPGGRDAFQLRLYRLRPLTLESEKILSQEAQN--FSWAQL 626
>GLND_ECO57 (Q8X8Y6) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 890 Score = 29.3 bits (64), Expect = 6.1 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Frame = +3 Query: 264 ERTDFKIGLATRLPSVELVFVVCLSHDRLVAGPR-------APRVAIPCEYTESISARAS 422 +R + + RLPS EL+F+ L HD +A R + + +++R + Sbjct: 489 QRHPLCVNVWPRLPSTELIFIAALFHD--IAKGRGGDHSILGAQDVVHFAELHGLNSRET 546 Query: 423 SSFAWLQRRH 452 AWL R+H Sbjct: 547 QLVAWLVRQH 556
>FXL16_HUMAN (Q8N461) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat| protein 16) Length = 479 Score = 28.9 bits (63), Expect = 7.9 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 16/85 (18%) Frame = +2 Query: 182 SGFTQSPPQLNSVGKRSLHQPNTYSSNGAY*FQNRACDPP------------PVSRACLR 325 +G + P Q N +G S+ + G +NR C PP P+SRA L Sbjct: 18 NGLVKLPGQPNGLGAASI-------TKGTPATKNRPCQPPPPPTLPPPSLAAPLSRAALA 70 Query: 326 RLPLTRSTGS----GP*GPASRHPL 388 P T + G P PA R PL Sbjct: 71 GGPCTPAGGPASALAPGHPAERPPL 95
>GLND_SHISS (Q3Z5J1) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 890 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = +3 Query: 297 RLPSVELVFVVCLSHDRLVAGPR-------APRVAIPCEYTESISARASSSFAWLQRRH 452 RLPS EL+F+ L HD +A R + + +++R + AWL R+H Sbjct: 500 RLPSTELIFIAALFHD--IAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQH 556
>GLND_SHIFL (Q83MD4) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 890 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = +3 Query: 297 RLPSVELVFVVCLSHDRLVAGPR-------APRVAIPCEYTESISARASSSFAWLQRRH 452 RLPS EL+F+ L HD +A R + + +++R + AWL R+H Sbjct: 500 RLPSTELIFIAALFHD--IAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQH 556
>GLND_SHIBS (Q325X3) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 890 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = +3 Query: 297 RLPSVELVFVVCLSHDRLVAGPR-------APRVAIPCEYTESISARASSSFAWLQRRH 452 RLPS EL+F+ L HD +A R + + +++R + AWL R+H Sbjct: 500 RLPSTELIFIAALFHD--IAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQH 556
>GLND_ECOLI (P27249) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 890 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = +3 Query: 297 RLPSVELVFVVCLSHDRLVAGPR-------APRVAIPCEYTESISARASSSFAWLQRRH 452 RLPS EL+F+ L HD +A R + + +++R + AWL R+H Sbjct: 500 RLPSTELIFIAALFHD--IAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQH 556
>GLND_ECOL6 (Q8CY19) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 890 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = +3 Query: 297 RLPSVELVFVVCLSHDRLVAGPR-------APRVAIPCEYTESISARASSSFAWLQRRH 452 RLPS EL+F+ L HD +A R + + +++R + AWL R+H Sbjct: 500 RLPSTELIFIAALFHD--IAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQH 556 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,553,382 Number of Sequences: 219361 Number of extensions: 1434203 Number of successful extensions: 4052 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3896 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4050 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
