ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome... 266 5e-68
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 266 5e-68
3dbj|AK065828.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 5e-68
4dbj|AK061548.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 5e-68
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 266 5e-68
6ref|NM_196478.1| Oryza sativa (japonica cultivar-group) unknown ... 264 2e-67
7dbj|AK098975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 1e-65
8gb|BT016704.1| Zea mays clone Contig537 mRNA sequence 168 9e-39
9gb|AY108933.1| Zea mays PCO071536 mRNA sequence 119 8e-24
10gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence 119 8e-24
11gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence 119 8e-24
12gb|AY109606.1| Zea mays CL4591_1 mRNA sequence 117 3e-23
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 4e-10
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
15gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome... 74 4e-10
16gb|BT017965.1| Zea mays clone EL01N0523F06.c mRNA sequence 62 2e-06
17gb|AY587604.1| Dianthus caryophyllus prolyl 4-hydroxylase (P4H1)... 52 0.002
18ref|XM_469992.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
19gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genom... 50 0.006
20dbj|AK059759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
21gb|AY110013.1| Zea mays CL32377_1 mRNA sequence 48 0.024
22gb|AY505071.1| Newcastle disease virus strain gamefowl/U.S.(CA)/... 42 1.5
23gb|AY562987.1| Newcastle disease virus isolate gamefowl/U.S.(CA)... 42 1.5
24gb|AC153802.1| Mus musculus 6 NOVECTOR RP24-79H20 (Roswell Park ... 40 5.8
25gb|AC163608.2| Mus musculus chromosome 1, clone RP24-185M14, com... 40 5.8
26emb|CT009748.6| Mouse DNA sequence from clone RP23-120N6 on chro... 40 5.8
27gb|AC117255.3| Mus musculus BAC clone RP24-481E4 from 3, complet... 40 5.8
28gb|AC113524.9| Mus musculus chromosome 6, clone RP23-120I17, com... 40 5.8
29gb|AC101994.3| Mus musculus chromosome 1, clone RP24-406F14, com... 40 5.8
30emb|BX004972.12| Zebrafish DNA sequence from clone CH211-166A6 i... 40 5.8
31dbj|AK156867.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 5.8
32gb|AY935498.1| Newcastle disease virus isolate 99-1435, complete... 40 5.8
33gb|AY935497.1| Newcastle disease virus isolate 99-1997PR-32, com... 40 5.8
34gb|AY935496.1| Newcastle disease virus isolate 99-0868lo, comple... 40 5.8
35gb|AY935495.1| Newcastle disease virus isolate 99-0868hi, comple... 40 5.8
36gb|AY935494.1| Newcastle disease virus isolate 99-0655, complete... 40 5.8
37gb|AY935492.1| Newcastle disease virus isolate 98-1249, complete... 40 5.8
38gb|AY935491.1| Newcastle disease virus isolate 98-1154, complete... 40 5.8
39gb|AY935489.1| Newcastle disease virus isolate 01-1108, complete... 40 5.8
40gb|AY225110.1| Newcastle disease virus strain HB92 isolate V4, c... 40 5.8
41emb|CT025661.8| Mouse DNA sequence from clone RP23-357H5 on chro... 40 5.8 
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC
             nbxb0045B21, complete sequence
          Length = 152397

 Score =  266 bits (134), Expect = 5e-68
 Identities = 227/258 (87%)
 Strand = Plus / Plus

                                                                         
Query: 176   aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 235
             |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 82086 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 82145

                                                                         
Query: 236   caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 295
             |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 82146 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 82205

                                                                         
Query: 296   attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 355
              |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 82206 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 82265

                                                                         
Query: 356   cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 415
             ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 82266 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 82325

                               
Query: 416   caaactgtcagggtctgt 433
             ||  ||||||| ||||||
Sbjct: 82326 caggctgtcagagtctgt 82343
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  266 bits (134), Expect = 5e-68
 Identities = 227/258 (87%)
 Strand = Plus / Plus

                                                                            
Query: 176      aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 235
                |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 13913460 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 13913519

                                                                            
Query: 236      caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 295
                |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 13913520 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 13913579

                                                                            
Query: 296      attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 355
                 |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 13913580 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 13913639

                                                                            
Query: 356      cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 415
                ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 13913640 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 13913699

                                  
Query: 416      caaactgtcagggtctgt 433
                ||  ||||||| ||||||
Sbjct: 13913700 caggctgtcagagtctgt 13913717
to top
>dbj|AK065828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G23, full
           insert sequence
          Length = 1152

 Score =  266 bits (134), Expect = 5e-68
 Identities = 227/258 (87%)
 Strand = Plus / Minus

                                                                       
Query: 176 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 235
           |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 617 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 558

                                                                       
Query: 236 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 295
           |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 557 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 498

                                                                       
Query: 296 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 355
            |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 497 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 438

                                                                       
Query: 356 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 415
           ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 437 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 378

                             
Query: 416 caaactgtcagggtctgt 433
           ||  ||||||| ||||||
Sbjct: 377 caggctgtcagagtctgt 360
to top
>dbj|AK061548.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A08, full
           insert sequence
          Length = 1212

 Score =  266 bits (134), Expect = 5e-68
 Identities = 227/258 (87%)
 Strand = Plus / Minus

                                                                       
Query: 176 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 235
           |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 971 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 912

                                                                       
Query: 236 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 295
           |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 911 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 852

                                                                       
Query: 296 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 355
            |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 851 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 792

                                                                       
Query: 356 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 415
           ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 791 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 732

                             
Query: 416 caaactgtcagggtctgt 433
           ||  ||||||| ||||||
Sbjct: 731 caggctgtcagagtctgt 714
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  266 bits (134), Expect = 5e-68
 Identities = 227/258 (87%)
 Strand = Plus / Plus

                                                                            
Query: 176      aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 235
                |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 13920802 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 13920861

                                                                            
Query: 236      caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 295
                |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 13920862 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 13920921

                                                                            
Query: 296      attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 355
                 |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 13920922 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 13920981

                                                                            
Query: 356      cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 415
                ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 13920982 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 13921041

                                  
Query: 416      caaactgtcagggtctgt 433
                ||  ||||||| ||||||
Sbjct: 13921042 caggctgtcagagtctgt 13921059
to top
>ref|NM_196478.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0045B21.11), mRNA
          Length = 1110

 Score =  264 bits (133), Expect = 2e-67
 Identities = 217/245 (88%)
 Strand = Plus / Minus

                                                                        
Query: 189  cacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttg 248
            ||||| ||||||||||||| |||||||||||||||||| || || |||||||| ||||| 
Sbjct: 1061 cacacattgcagctcttccggcagaagccaggtgcttcattggtacccaccatgtagttc 1002

                                                                        
Query: 249  gggttcttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctcg 308
            || |||||||| |||||||| || ||||||||||| | ||||||||| ||||||||||||
Sbjct: 1001 ggattcttggcacactcccctactgcagcccactgggggcagaggacgttctcatcctcg 942

                                                                        
Query: 309  cacccgtcaccggaagctccctgcttgcctgagttttcgaaggacctcacatggatccat 368
            |||||||||  |||||||||||||||| | ||| | ||||||||||||||||||||||||
Sbjct: 941  cacccgtcagtggaagctccctgcttgacagagatgtcgaaggacctcacatggatccat 882

                                                                        
Query: 369  ttcgtggcggaccacttctggccttcgatgacggggcagctcccgtgcaaactgtcaggg 428
            || || |||||||||||||| ||||| ||||| ||||||||||||||||  ||||||| |
Sbjct: 881  ttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtgcaggctgtcagag 822

                 
Query: 429  tctgt 433
            |||||
Sbjct: 821  tctgt 817
to top
>dbj|AK098975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B02, full
           insert sequence
          Length = 1127

 Score =  258 bits (130), Expect = 1e-65
 Identities = 227/258 (87%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                       
Query: 176 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 235
           |||||||||  | ||||| ||||||||||||| |||||||||||||||||| || || ||
Sbjct: 972 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 913

                                                                       
Query: 236 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 295
           |||||| ||||| || |||||||| |||||||| || ||||||||||| | |||||||||
Sbjct: 912 caccatgtagttcggattcttggcacactcccctactgcagcccactggg-gcagaggac 854

                                                                       
Query: 296 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 355
            |||||||||||||||||||||  |||||||||||||||| | ||| | |||||||||||
Sbjct: 853 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 794

                                                                       
Query: 356 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 415
           ||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 793 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 734

                             
Query: 416 caaactgtcagggtctgt 433
           ||  ||||||| ||||||
Sbjct: 733 caggctgtcagagtctgt 716
to top
>gb|BT016704.1| Zea mays clone Contig537 mRNA sequence
          Length = 1224

 Score =  168 bits (85), Expect = 9e-39
 Identities = 196/233 (84%)
 Strand = Plus / Minus

                                                                       
Query: 202 tcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttcttggcgc 261
           |||||| |||||||||||| |||||||| || |||||||| ||||| ||||||||||| |
Sbjct: 986 tcttccggcagaagccaggagcttccttggtccccaccatgtagttagggttcttggcac 927

                                                                       
Query: 262 actccccaacggcagcccactgcgagcagaggacattctcatcctcgcacccgtcaccgg 321
           |||| || || || |||||||| | |||||||| ||| || |||||||| ||||||  ||
Sbjct: 926 actcacccacagctgcccactgggggcagaggatattgtcgtcctcgcatccgtcagagg 867

                                                                       
Query: 322 aagctccctgcttgcctgagttttcgaaggacctcacatggatccatttcgtggcggacc 381
           || |   |||||| || | |   || || |||||||||||||||||||| || |||||||
Sbjct: 866 aacccggctgcttcccagggaggtcaaatgacctcacatggatccatttagttgcggacc 807

                                                                
Query: 382 acttctggccttcgatgacggggcagctcccgtgcaaactgtcagggtctgtc 434
           |||||||||||||||| ||||||||||| |||||||| ||||||| |||||||
Sbjct: 806 acttctggccttcgattacggggcagctaccgtgcaagctgtcagagtctgtc 754
to top
>gb|AY108933.1| Zea mays PCO071536 mRNA sequence
          Length = 676

 Score =  119 bits (60), Expect = 8e-24
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                       
Query: 351 gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 410
           |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 313 gacctcacatggatccatttagttgcggaccacttctggccttcgattacggggcagcta 254

                                   
Query: 411 ccgtgcaaactgtcagggtctgtc 434
           |||||||| ||||||| |||||||
Sbjct: 253 ccgtgcaagctgtcagagtctgtc 230



 Score =  109 bits (55), Expect = 8e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                       
Query: 195 ttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttc 254
           ||||||||||||| |||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 469 ttgcagctcttccggcagaagccaggagcttccttggtccccaccatgtagttagggttc 410

                                                                       
Query: 255 ttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctcgcacccg 314
           ||||| ||||| || || || |||||||| | |||||||| ||| || |||||||| |||
Sbjct: 409 ttggcacactcacccacagctgcccactgggggcagaggatattgtcgtcctcgcatccg 350

              
Query: 315 tca 317
           |||
Sbjct: 349 tca 347
to top
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence
          Length = 366120

 Score =  119 bits (60), Expect = 8e-24
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                         
Query: 351   gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 410
             |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 25448 gacctcacatggatccatttagttgcggaccacttctggccttcgattacggggcagcta 25389

                                     
Query: 411   ccgtgcaaactgtcagggtctgtc 434
             |||||||| ||||||| |||||||
Sbjct: 25388 ccgtgcaagctgtcagagtctgtc 25365



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 93/109 (85%)
 Strand = Plus / Minus

                                                                         
Query: 209   gcagaagccaggtgcttccttcgtgcccaccatatagttggggttcttggcgcactcccc 268
             |||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||| ||
Sbjct: 25590 gcagaagccaggagcttccttggtccccaccatgtagttagggttcttggcacactcacc 25531

                                                              
Query: 269   aacggcagcccactgcgagcagaggacattctcatcctcgcacccgtca 317
              || || |||||||| | |||||||| ||| || |||||||| ||||||
Sbjct: 25530 cacagctgcccactgggggcagaggatattgtcgtcctcgcatccgtca 25482
to top
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence
          Length = 317137

 Score =  119 bits (60), Expect = 8e-24
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                         
Query: 351   gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 410
             |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 28105 gacctcacatggatccatttagttgcggaccacttctggccttcgattacggggcagcta 28046

                                     
Query: 411   ccgtgcaaactgtcagggtctgtc 434
             |||||||| ||||||| |||||||
Sbjct: 28045 ccgtgcaagctgtcagagtctgtc 28022



 Score =  109 bits (55), Expect = 8e-21
 Identities = 106/123 (86%)
 Strand = Plus / Minus

                                                                         
Query: 195   ttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttc 254
             ||||||||||||| |||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 28261 ttgcagctcttccggcagaagccaggagcttccttggtccccaccatgtagttagggttc 28202

                                                                         
Query: 255   ttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctcgcacccg 314
             ||||| ||||| || || || |||||||| | |||||||| ||| || |||||||| |||
Sbjct: 28201 ttggcacactcacccacagctgcccactgggggcagaggatattgtcgtcctcgcatccg 28142

                
Query: 315   tca 317
             |||
Sbjct: 28141 tca 28139
to top
>gb|AY109606.1| Zea mays CL4591_1 mRNA sequence
          Length = 1093

 Score =  117 bits (59), Expect = 3e-23
 Identities = 77/83 (92%)
 Strand = Plus / Minus

                                                                       
Query: 351 gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 410
           |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| 
Sbjct: 755 gacctcacatggatccatttagtcgcggaccacttctggccttcgatggcggggcagcta 696

                                  
Query: 411 ccgtgcaaactgtcagggtctgt 433
           |||||||| ||||||| ||||||
Sbjct: 695 ccgtgcaagctgtcagagtctgt 673



 Score =  115 bits (58), Expect = 1e-22
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                       
Query: 195 ttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttc 254
           ||||||||||||| ||||||||||||||||||||| || |||||||| ||||| ||||||
Sbjct: 911 ttgcagctcttccggcagaagccaggtgcttccttggtccccaccatgtagttagggttc 852

                                                                
Query: 255 ttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctc 307
           ||||||||||| || ||||| |||||||     ||||||||||| || |||||
Sbjct: 851 ttggcgcactcgcccacggccgcccactnnnnncagaggacattgtcgtcctc 799
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                           
Query: 349     aggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagc 408
               |||| |||||||||||||||||||| || |||||||||| |||||  ||||| |||||||
Sbjct: 3553340 aggatctcacatggatccatttcgtcgccgaccacttctcgccttgtatgacagggcagc 3553281

                        
Query: 409     tcccgtgca 417
               | |||||||
Sbjct: 3553280 ttccgtgca 3553272



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 357      acatggatccatttcgtggcggaccacttctggccttcgat 397
                ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 33219024 acatggatccatttcgttgcagaccatttctcgccttcgat 33219064



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                           
Query: 192     acgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttgggg 251
               |||||||| ||||||| |||||||||||| | |||  | ||||| ||||| ||   ||||
Sbjct: 3553491 acgttgcaactcttccggcagaagccaggggattcactggtgccgaccatgtaaccgggg 3553432

                                            
Query: 252     ttcttggcgcactccccaacggcagccca 280
               |||||||| ||||| ||| | ||||||||
Sbjct: 3553431 ttcttggcacactctccagcagcagccca 3553403



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 192     acgttgcagctcttcctgcagaagccagg 220
               |||||||| ||||||| ||||||||||||
Sbjct: 3550608 acgttgcaactcttccggcagaagccagg 3550580



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 56/65 (86%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                           
Query: 248     ggggttcttggcgcactccccaacggcagccca-ctgcgagcagaggacattctcatcct 306
               |||||||||||| ||||| ||  |||||||||| ||| |||||||| ||||  |||||||
Sbjct: 3550549 ggggttcttggcacactctcctgcggcagcccagctg-gagcagagaacatgttcatcct 3550491

                    
Query: 307     cgcac 311
               |||||
Sbjct: 3550490 cgcac 3550486
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                           
Query: 349     aggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagc 408
               |||| |||||||||||||||||||| || |||||||||| |||||  ||||| |||||||
Sbjct: 3553451 aggatctcacatggatccatttcgtcgccgaccacttctcgccttgtatgacagggcagc 3553392

                        
Query: 409     tcccgtgca 417
               | |||||||
Sbjct: 3553391 ttccgtgca 3553383



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 357      acatggatccatttcgtggcggaccacttctggccttcgat 397
                ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 33309534 acatggatccatttcgttgcagaccatttctcgccttcgat 33309574



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                           
Query: 192     acgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttgggg 251
               |||||||| ||||||| |||||||||||| | |||  | ||||| ||||| ||   ||||
Sbjct: 3553602 acgttgcaactcttccggcagaagccaggggattcactggtgccgaccatgtaaccgggg 3553543

                                            
Query: 252     ttcttggcgcactccccaacggcagccca 280
               |||||||| ||||| ||| | ||||||||
Sbjct: 3553542 ttcttggcacactctccagcagcagccca 3553514



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 192     acgttgcagctcttcctgcagaagccagg 220
               |||||||| ||||||| ||||||||||||
Sbjct: 3550719 acgttgcaactcttccggcagaagccagg 3550691



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 56/65 (86%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                           
Query: 248     ggggttcttggcgcactccccaacggcagccca-ctgcgagcagaggacattctcatcct 306
               |||||||||||| ||||| ||  |||||||||| ||| |||||||| ||||  |||||||
Sbjct: 3550660 ggggttcttggcacactctcctgcggcagcccagctg-gagcagagaacatgttcatcct 3550602

                    
Query: 307     cgcac 311
               |||||
Sbjct: 3550601 cgcac 3550597
to top
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0026H19, complete sequence
          Length = 150620

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                         
Query: 349   aggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagc 408
             |||| |||||||||||||||||||| || |||||||||| |||||  ||||| |||||||
Sbjct: 70993 aggatctcacatggatccatttcgtcgccgaccacttctcgccttgtatgacagggcagc 70934

                      
Query: 409   tcccgtgca 417
             | |||||||
Sbjct: 70933 ttccgtgca 70925



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                         
Query: 192   acgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttgggg 251
             |||||||| ||||||| |||||||||||| | |||  | ||||| ||||| ||   ||||
Sbjct: 71144 acgttgcaactcttccggcagaagccaggggattcactggtgccgaccatgtaaccgggg 71085

                                          
Query: 252   ttcttggcgcactccccaacggcagccca 280
             |||||||| ||||| ||| | ||||||||
Sbjct: 71084 ttcttggcacactctccagcagcagccca 71056



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 192   acgttgcagctcttcctgcagaagccagg 220
             |||||||| ||||||| ||||||||||||
Sbjct: 68261 acgttgcaactcttccggcagaagccagg 68233



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 56/65 (86%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                         
Query: 248   ggggttcttggcgcactccccaacggcagccca-ctgcgagcagaggacattctcatcct 306
             |||||||||||| ||||| ||  |||||||||| ||| |||||||| ||||  |||||||
Sbjct: 68202 ggggttcttggcacactctcctgcggcagcccagctg-gagcagagaacatgttcatcct 68144

                  
Query: 307   cgcac 311
             |||||
Sbjct: 68143 cgcac 68139
to top
>gb|BT017965.1| Zea mays clone EL01N0523F06.c mRNA sequence
          Length = 1150

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 345 tcgaaggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacgggg 404
           ||||| ||||| || |||||||||||||| || ||||| |||| ||| ||||| || |||
Sbjct: 807 tcgaacgacctgacgtggatccatttcgtcgccgaccatttctcgccctcgatcaccggg 748

                      
Query: 405 cagctcccgtg 415
           |||||||||||
Sbjct: 747 cagctcccgtg 737
to top
>gb|AY587604.1| Dianthus caryophyllus prolyl 4-hydroxylase (P4H1) mRNA, complete
           cds
          Length = 1201

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 348 aaggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcag 407
           |||||||  ||||||||||||||||| || ||||| || |  ||||| || || ||||||
Sbjct: 845 aaggaccgaacatggatccatttcgttgctgaccatttttcaccttcaattacagggcag 786

                         
Query: 408 ctcccgtgcaaact 421
           || |||||||||||
Sbjct: 785 ctaccgtgcaaact 772
to top
>ref|XM_469992.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 900

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 357 acatggatccatttcgtggcggaccacttctggccttcgat 397
           ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 725 acatggatccatttcgttgcagaccatttctcgccttcgat 685
to top
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete
             sequence
          Length = 144487

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 357   acatggatccatttcgtggcggaccacttctggccttcgat 397
             ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 25531 acatggatccatttcgttgcagaccatttctcgccttcgat 25491
to top
>dbj|AK059759.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E11, full
           insert sequence
          Length = 1114

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 357 acatggatccatttcgtggcggaccacttctggccttcgat 397
           ||||||||||||||||| || ||||| |||| |||||||||
Sbjct: 739 acatggatccatttcgttgcagaccatttctcgccttcgat 699
to top
>gb|AY110013.1| Zea mays CL32377_1 mRNA sequence
          Length = 840

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 362 gatccatttcgtggcggaccacttctggccttcgatgacggggcagct 409
           ||||||||| ||||||  ||| |||| ||||| |||||||||||||||
Sbjct: 183 gatccatttggtggcgacccatttctcgcctttgatgacggggcagct 230
to top
>gb|AY505071.1| Newcastle disease virus strain gamefowl/U.S.(CA)/211472/02
           RNA-dependent RNA polymerase (L) gene, complete cds
          Length = 6615

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 34  aaattaactgggctaccactt 54
           |||||||||||||||||||||
Sbjct: 100 aaattaactgggctaccactt 120
to top
>gb|AY562987.1| Newcastle disease virus isolate gamefowl/U.S.(CA)/211472/02, complete
            genome
          Length = 15192

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 34   aaattaactgggctaccactt 54
            |||||||||||||||||||||
Sbjct: 8486 aaattaactgggctaccactt 8506
to top
>gb|AC153802.1| Mus musculus 6 NOVECTOR RP24-79H20 (Roswell Park Cancer Institute
              (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 189471

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      atatggacgtcacaagtccc 27
              ||||||||||||||||||||
Sbjct: 178657 atatggacgtcacaagtccc 178638
to top
>gb|AC163608.2| Mus musculus chromosome 1, clone RP24-185M14, complete sequence
          Length = 161555

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ccaaaagcatccagcaaaca 111
             ||||||||||||||||||||
Sbjct: 83539 ccaaaagcatccagcaaaca 83558
to top
>emb|CT009748.6| Mouse DNA sequence from clone RP23-120N6 on chromosome 9, complete
              sequence
          Length = 235839

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     aaagcatccagcaaacagcc 114
              ||||||||||||||||||||
Sbjct: 226428 aaagcatccagcaaacagcc 226409
to top
>gb|AC117255.3| Mus musculus BAC clone RP24-481E4 from 3, complete sequence
          Length = 209706

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    agaagccaggtgcttccttc 230
              ||||||||||||||||||||
Sbjct: 132694 agaagccaggtgcttccttc 132675
to top
>gb|AC113524.9| Mus musculus chromosome 6, clone RP23-120I17, complete sequence
          Length = 216807

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      atatggacgtcacaagtccc 27
              ||||||||||||||||||||
Sbjct: 157301 atatggacgtcacaagtccc 157320
to top
>gb|AC101994.3| Mus musculus chromosome 1, clone RP24-406F14, complete sequence
          Length = 164170

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     ccaaaagcatccagcaaaca 111
              ||||||||||||||||||||
Sbjct: 120554 ccaaaagcatccagcaaaca 120573
to top
>emb|BX004972.12| Zebrafish DNA sequence from clone CH211-166A6 in linkage group 8,
             complete sequence
          Length = 151374

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    aaagcatccagcaaacagcc 114
             ||||||||||||||||||||
Sbjct: 70728 aaagcatccagcaaacagcc 70709
to top
>dbj|AK156867.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830104B06 product:ancient ubiquitous
            protein, full insert sequence
          Length = 2398

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  ctcttcctgcagaagccagg 220
            ||||||||||||||||||||
Sbjct: 2175 ctcttcctgcagaagccagg 2194
to top
>gb|AY935498.1| Newcastle disease virus isolate 99-1435, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaattaactgggctaccact 53
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499
to top
>gb|AY935497.1| Newcastle disease virus isolate 99-1997PR-32, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaattaactgggctaccact 53
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499
to top
>gb|AY935496.1| Newcastle disease virus isolate 99-0868lo, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaattaactgggctaccact 53
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499
to top
>gb|AY935495.1| Newcastle disease virus isolate 99-0868hi, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaattaactgggctaccact 53
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499
to top
>gb|AY935494.1| Newcastle disease virus isolate 99-0655, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaattaactgggctaccact 53
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499
to top
>gb|AY935492.1| Newcastle disease virus isolate 98-1249, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaattaactgggctaccact 53
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499
to top
>gb|AY935491.1| Newcastle disease virus isolate 98-1154, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaattaactgggctaccact 53
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499
to top
>gb|AY935489.1| Newcastle disease virus isolate 01-1108, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaattaactgggctaccact 53
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499
to top
>gb|AY225110.1| Newcastle disease virus strain HB92 isolate V4, complete genome
          Length = 15186

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   aaattaactgggctaccact 53
            ||||||||||||||||||||
Sbjct: 8480 aaattaactgggctaccact 8499
to top
>emb|CT025661.8| Mouse DNA sequence from clone RP23-357H5 on chromosome 9, complete
             sequence
          Length = 219201

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   ctcttcctgcagaagccagg 220
             ||||||||||||||||||||
Sbjct: 83763 ctcttcctgcagaagccagg 83744


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,449,227
Number of Sequences: 3902068
Number of extensions: 3449227
Number of successful extensions: 76447
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76283
Number of HSP's gapped (non-prelim): 157
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top