>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 93  HPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQRRSIPPF*HGLKLKANTTH 245
           HP P S P+  P+    H HP P+ +  P  Q  S P   HG +L  +T++
Sbjct: 213 HPHPHSHPHSHPHP---HPHPHPHQIPHPHPQPHSQP---HGHRLLRSTSN 257

>TRUB_LEGPA (Q5X1C5) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 52  TQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 165
           T    NN+   L+ +QD+ L Q  A +  ++ +I+HLT
Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAIQHLT 242

>COBL6_ARATH (O04500) COBRA-like protein 6 precursor|
          Length = 454

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 142 SVWVYGLQFGPESGPGCCLSLFAYYYGHFV 53
           +V VY  QF     P CC+SL A+YY + V
Sbjct: 217 AVCVYS-QFRSSPSPKCCVSLSAFYYQNIV 245

>TRUB_LEGPL (Q5WT38) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 52  TQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 165
           T    NN+   L+ +QD+ L Q  A +  ++ +++HLT
Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAVQHLT 242

>TRUB_LEGPH (Q5ZRV6) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 303

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 52  TQSARNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLT 165
           T    NN+   L+ +QD+ L Q  A +  ++ +++HLT
Sbjct: 205 TAGFENNRMYTLDELQDMPLSQRLACLIPIDQAVQHLT 242

>ISPZ_HAEDU (Q7VKZ1) Probable intracellular septation protein|
          Length = 183

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 170 KPVR*RMLVFSLGIRASVWSRVR-SWMLFKFICLLLRAL 57
           KPV   +L   L +   VW+R+   W +F  IC+L+  +
Sbjct: 98  KPVVKMLLAKELSLPTQVWNRLNLGWAIFFIICMLINII 136

>CRK_XENLA (P87378) SH2/SH3 adaptor crk (Adapter molecule crk) (CRK2)|
          Length = 296

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 78  NKLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQR 191
           N+   HP P  GP   PY Q     P PN  + P   R
Sbjct: 197 NQENSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIFAR 234

>K10_DROME (P13468) DNA-binding protein K10 (Female sterile protein K10)|
          Length = 463

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 81  KLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQRRSIP 203
           K +QHP P+     SP  Q   +HPSPN    P   ++  P
Sbjct: 126 KQQQHPSPNQQQPPSPNQQ---QHPSPNQQQHPSPNQQQHP 163

>ATM_NEUCR (Q7RZT9) Serine/threonine-protein kinase tel-1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase tel-1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2953

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 85   LNNIQDLTLDQTEARIPKLNTSIRHLTGFTDRTFKDDQSLHFDTDLNLK 231
            ++N+ +  LDQT+    KL+ +++     T    +D+Q L  +T L L+
Sbjct: 1798 VHNVLEYELDQTQGMKQKLSEALKEWLTSTSPAARDNQKLLINTILYLR 1846

>TAGF_BACSU (P13485) CDP-glycerol:poly(glycerophosphate)|
           glycerophosphotransferase (EC 2.7.8.12) (Polyglycerol
           phosphate polymerase) (CGPTase) (Major teichoic acid
           biosynthesis protein F)
          Length = 746

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 64  RNNKQINLNNIQDLTLDQTEARIPKLNTSIRHLTGFTDRTFKDDQSLHFDTDLNLKQTR 240
           RN+   N NN + ++L ++   IP+    I +   + D  F       FD DL+L Q R
Sbjct: 540 RNDFLHNDNNEETISLIKSRLNIPRDKKVILYAPTWRDDQFYAKGRYKFDLDLDLHQLR 598

>POLG_ZYMVS (O36979) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3083

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
 Frame = +1

Query: 7    RKSLIRRHNAQQ*TNTQSAR------NNKQINLNNIQDL 105
            RK  +R H A      Q AR      N+K +N+NN+ DL
Sbjct: 1751 RKRYMRDHTAHHIAILQQARAQLLEFNSKNVNINNLSDL 1789


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,229,452
Number of Sequences: 219361
Number of extensions: 679368
Number of successful extensions: 1880
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)