ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X84056.1|HVPAF93 H.vulgare paf93 gene 430 e-118
2gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence 127 2e-26
3gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein ... 107 2e-20
4gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (... 105 6e-20
5gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, c... 98 2e-17
6gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein ... 98 2e-17
7emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin... 92 1e-15
8emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chr... 48 0.013
9gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydratio... 42 0.80
10gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, com... 42 0.80
11emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 i... 42 0.80
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.80
13emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in ... 42 0.80
14gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome... 42 0.80
15dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.80
16dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.80
17gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosom... 40 3.2
18ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypo... 40 3.2
19gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, com... 40 3.2
20emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 ... 40 3.2
21emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 i... 40 3.2
22dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07,... 40 3.2
23dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, ... 40 3.2
24gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, comple... 40 3.2
25dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 3.2
26dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 3.2

>emb|X84056.1|HVPAF93 H.vulgare paf93 gene
          Length = 1154

 Score =  430 bits (217), Expect = e-118
 Identities = 235/241 (97%)
 Strand = Plus / Minus

                                                                        
Query: 5    ggcggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaaagtgccc 64
            |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 1095

                                                                        
Query: 65   gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 1035

                                                                        
Query: 125  cccgtatacccaaactgaacacaagcatccgtcacctaacgggcttcacagaccggacct 184
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1034 cccgtatacccaaactgaacacaagcatccgtcacctaacggacttcacagaccggacct 975

                                                                        
Query: 185  tcaaagacgatcaatccctccattttgacacggacttaaacttaaagcaaacacgacaca 244
            ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 974  tcaaagacgatcaatccctccatcttgacacggacttagacgtaaagcaaacacgacaca 915

             
Query: 245  c 245
            |
Sbjct: 914  c 914



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>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence
          Length = 1130

 Score =  127 bits (64), Expect = 2e-26
 Identities = 110/123 (89%), Gaps = 8/123 (6%)
 Strand = Plus / Minus

                                                                        
Query: 1    actgggcggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaaagt 60
            |||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||
Sbjct: 1114 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagt 1056

                                                                        
Query: 61   gcccgtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaact 120
            ||||      ||||| ||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct: 1055 gccc------ataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaact 1003

               
Query: 121  gaa 123
            |||
Sbjct: 1002 gaa 1000



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 100/114 (87%), Gaps = 3/114 (2%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| ||||| ||||||||||  ||||||||||||||||||||||||| |||||
Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccggaccttc-aagac 951

                                                                  
Query: 193  gatcaatccct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245
            |||||| |||| |||  |||||||  ||||| || |||||||||||| ||||||
Sbjct: 950  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacac 897



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>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA,
            complete cds
          Length = 1242

 Score =  107 bits (54), Expect = 2e-20
 Identities = 103/116 (88%), Gaps = 5/116 (4%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaaagtgcccgta 67
            ||||||||||||||  |||||||||||||||||||  ||||||||||| ||| ||||   
Sbjct: 1138 ggaaatctttaatatcaaggcataatgcccagcaaataaccaatacac-aagcgccc--- 1083

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
            |||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1082 ataataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1028



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 100/114 (87%), Gaps = 3/114 (2%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 978

                                                                  
Query: 193  gatcaatccct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245
            |||||| |||| |||  |||||||  |||| ||| |||||||||||| ||||||
Sbjct: 977  gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacac 925



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>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete
            cds
          Length = 1136

 Score =  105 bits (53), Expect = 6e-20
 Identities = 102/116 (87%), Gaps = 8/116 (6%)
 Strand = Plus / Minus

                                                                        
Query: 8    ggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaaagtgcccgta 67
            ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||   
Sbjct: 1136 ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgccc--- 1081

                                                                    
Query: 68   ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123
               ||||| ||| ||||||  ||||||||||||||||||||||| |||||||||||
Sbjct: 1080 ---ataagtaaacaaactt-gacaacatccaggacctgactctgaaccaaactgaa 1029



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 99/114 (86%), Gaps = 2/114 (1%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| || ||||| |||||||  |||||||||||| ||||||||||||||||||
Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccggaccttcaaagac 979

                                                                  
Query: 193  gatcaatccct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245
            |||||| |||| |||  |||||||  ||||| || |||||||||||| ||||||
Sbjct: 978  gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacac 925



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>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds
          Length = 2254

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 52/53 (98%)
 Strand = Plus / Minus

                                                                 
Query: 193  gatcaatccctccattttgacacggacttaaacttaaagcaaacacgacacac 245
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacac 2194



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>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA,
            complete cds
          Length = 1181

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 55/57 (96%)
 Strand = Plus / Minus

                                                                     
Query: 1    actgggcggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaa 57
            |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 1145 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaa 1089



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 91/105 (86%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                        
Query: 142  aacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatcc 201
            |||| ||||| |||||||  |||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaaccc 979

                                                         
Query: 202  ct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245
            || |||  |||||||  ||||| || |||||||||||| ||||||
Sbjct: 978  ctcccaccttgacaccaacttagacgtaaagcaaacacaacacac 934



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>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene)
          Length = 1127

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 89/100 (89%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                        
Query: 24   aaggcataatgcccagcaataaaccaatacacaaagtgcccgtaataataagcaaataaa 83
            |||||||||||||||||||  ||||||||||||| | ||||   |||||||| ||| |||
Sbjct: 1120 aaggcataatgcccagcaaataaccaatacacaa-gcgccc---ataataagtaaacaaa 1065

                                                    
Query: 84   cttaaacaacatccaggacctgactctggaccaaactgaa 123
            ||||| |||||||||||||||||||||| |||||||||||
Sbjct: 1064 cttaa-caacatccaggacctgactctgaaccaaactgaa 1026



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 100/114 (87%), Gaps = 3/114 (2%)
 Strand = Plus / Minus

                                                                        
Query: 134  ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192
            |||||||||| ||||||||||||||||  |||||||||||| ||||| ||||||||||||
Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 976

                                                                  
Query: 193  gatcaatccct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245
            |||||| |||| |||  |||||||  |||| ||| |||||||||||| ||||||
Sbjct: 975  gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacac 923



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>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete
              sequence
          Length = 205838

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 103    ctgactctggaccaaactgaagcc 126
              ||||||||||||||||||||||||
Sbjct: 138293 ctgactctggaccaaactgaagcc 138316



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>gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydration-stress inducible
            protein 1 mRNA, complete cds
          Length = 1315

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 2    ctgggcggaaatctttaataagaaggcataatgcccagcaataaaccaataca 54
            |||||| |||||| ||||||  |||||| ||||||||||   |||||||||||
Sbjct: 1265 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 1213



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>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence
          Length = 156547

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 132    acccaaactgaacacaagcat 152
              |||||||||||||||||||||
Sbjct: 134241 acccaaactgaacacaagcat 134261



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>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24
              Contains part of a novel gene similar to human DECR2
              (peroxisomal 2,4-dienoyl CoA reductase 2),  a novel gene
              similar to human KIAA0665, a novel gene similar to human
              KIAA0683, a novel gene similar to human KIAA0590, part of a
              novel gene and three CpG islands, complete sequence
          Length = 161218

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     caataaaccaatacacaaagt 60
              |||||||||||||||||||||
Sbjct: 156591 caataaaccaatacacaaagt 156571



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 2        ctgggcggaaatctttaataagaaggcataatgcccagcaataaaccaataca 54
                |||||| |||||| ||||||  |||||| ||||||||||   |||||||||||
Sbjct: 27184022 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 27184074



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>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24,
             complete sequence
          Length = 176602

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    caataaaccaatacacaaagt 60
             |||||||||||||||||||||
Sbjct: 34762 caataaaccaatacacaaagt 34782



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>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence
          Length = 213581

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    cataatgcccagcaataaacc 48
             |||||||||||||||||||||
Sbjct: 49844 cataatgcccagcaataaacc 49824



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>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684A08
          Length = 137841

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 2     ctgggcggaaatctttaataagaaggcataatgcccagcaataaaccaataca 54
             |||||| |||||| ||||||  |||||| ||||||||||   |||||||||||
Sbjct: 34693 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 34745



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>dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042N13, full
            insert sequence
          Length = 1292

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 2    ctgggcggaaatctttaataagaaggcataatgcccagcaataaaccaataca 54
            |||||| |||||| ||||||  |||||| ||||||||||   |||||||||||
Sbjct: 1277 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 1225



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>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence
          Length = 221754

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 153660 aataagcaaataaacttaaa 153679



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>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0511) partial mRNA
          Length = 5448

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   aaataaacttaaacaacatc 96
            ||||||||||||||||||||
Sbjct: 4865 aaataaacttaaacaacatc 4884



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>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence
          Length = 211515

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 65     gtaataataagcaaataaacttaaacaa 92
              |||||||||||||||| || ||||||||
Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841



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>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5,
             complete sequence
          Length = 177385

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    taataataagcaaataaacttaaa 89
             |||||||||| |||||||||||||
Sbjct: 63646 taataataagtaaataaacttaaa 63623



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>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5,
             complete sequence
          Length = 157791

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    taataataagcaaataaacttaaa 89
             |||||||||| |||||||||||||
Sbjct: 81135 taataataagtaaataaacttaaa 81112



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>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete
            sequences
          Length = 181678

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 97   caggacctgactctggaccaaactgaag 124
            |||||| ||||||||||||| |||||||
Sbjct: 3276 caggacttgactctggaccagactgaag 3249



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>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete
              sequences
          Length = 155513

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 131204 caggacttgactctggaccagactgaag 131177



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>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence
          Length = 176649

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aataagcaaataaacttaaa 89
              ||||||||||||||||||||
Sbjct: 121495 aataagcaaataaacttaaa 121476



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>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 97    caggacctgactctggaccaaactgaag 124
             |||||| ||||||||||||| |||||||
Sbjct: 80688 caggacttgactctggaccagactgaag 80661



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>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete
              sequence
          Length = 136804

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 97     caggacctgactctggaccaaactgaag 124
              |||||| ||||||||||||| |||||||
Sbjct: 102805 caggacttgactctggaccagactgaag 102778


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,158,537
Number of Sequences: 3902068
Number of extensions: 2158537
Number of successful extensions: 42078
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42011
Number of HSP's gapped (non-prelim): 59
length of query: 245
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 223
effective length of database: 17,147,199,772
effective search space: 3823825549156
effective search space used: 3823825549156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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