Clone Name | rbart18c01 |
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Clone Library Name | barley_pub |
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene Length = 1154 Score = 430 bits (217), Expect = e-118 Identities = 235/241 (97%) Strand = Plus / Minus Query: 5 ggcggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaaagtgccc 64 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 ggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaaagtgccc 1095 Query: 65 gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 gtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaag 1035 Query: 125 cccgtatacccaaactgaacacaagcatccgtcacctaacgggcttcacagaccggacct 184 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1034 cccgtatacccaaactgaacacaagcatccgtcacctaacggacttcacagaccggacct 975 Query: 185 tcaaagacgatcaatccctccattttgacacggacttaaacttaaagcaaacacgacaca 244 ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 974 tcaaagacgatcaatccctccatcttgacacggacttagacgtaaagcaaacacgacaca 915 Query: 245 c 245 | Sbjct: 914 c 914
>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence Length = 1130 Score = 127 bits (64), Expect = 2e-26 Identities = 110/123 (89%), Gaps = 8/123 (6%) Strand = Plus / Minus Query: 1 actgggcggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaaagt 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct: 1114 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagt 1056 Query: 61 gcccgtaataataagcaaataaacttaaacaacatccaggacctgactctggaccaaact 120 |||| ||||| ||| |||||| |||||||||||||||||||||||| |||||||| Sbjct: 1055 gccc------ataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaact 1003 Query: 121 gaa 123 ||| Sbjct: 1002 gaa 1000 Score = 91.7 bits (46), Expect = 1e-15 Identities = 100/114 (87%), Gaps = 3/114 (2%) Strand = Plus / Minus Query: 134 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192 |||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 1009 ccaaactgaaacacaaacatccgtcactgaacgggcttcacagaccggaccttc-aagac 951 Query: 193 gatcaatccct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245 |||||| |||| ||| ||||||| ||||| || |||||||||||| |||||| Sbjct: 950 gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacac 897
>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA, complete cds Length = 1242 Score = 107 bits (54), Expect = 2e-20 Identities = 103/116 (88%), Gaps = 5/116 (4%) Strand = Plus / Minus Query: 8 ggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaaagtgcccgta 67 |||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||| Sbjct: 1138 ggaaatctttaatatcaaggcataatgcccagcaaataaccaatacac-aagcgccc--- 1083 Query: 68 ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123 |||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 1082 ataataagtaaacaaactt-aacaacatccaggacctgactctgaaccaaactgaa 1028 Score = 91.7 bits (46), Expect = 1e-15 Identities = 100/114 (87%), Gaps = 3/114 (2%) Strand = Plus / Minus Query: 134 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192 |||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct: 1037 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 978 Query: 193 gatcaatccct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245 |||||| |||| ||| ||||||| |||| ||| |||||||||||| |||||| Sbjct: 977 gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacac 925
>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete cds Length = 1136 Score = 105 bits (53), Expect = 6e-20 Identities = 102/116 (87%), Gaps = 8/116 (6%) Strand = Plus / Minus Query: 8 ggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaaagtgcccgta 67 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 1136 ggaaatctttaatatcaaggcataatgcccagcaataaaccaatacac-aagtgccc--- 1081 Query: 68 ataataagcaaataaacttaaacaacatccaggacctgactctggaccaaactgaa 123 ||||| ||| |||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 1080 ---ataagtaaacaaactt-gacaacatccaggacctgactctgaaccaaactgaa 1029 Score = 91.7 bits (46), Expect = 1e-15 Identities = 99/114 (86%), Gaps = 2/114 (1%) Strand = Plus / Minus Query: 134 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192 |||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||| Sbjct: 1038 ccaaactgaaacagaagcacccgtcactgaacgggcttcacggaccggaccttcaaagac 979 Query: 193 gatcaatccct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245 |||||| |||| ||| ||||||| ||||| || |||||||||||| |||||| Sbjct: 978 gatcaacccctcccaccttgacaccaacttagacgtaaagcaaacacaacacac 925
>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds Length = 2254 Score = 97.6 bits (49), Expect = 2e-17 Identities = 52/53 (98%) Strand = Plus / Minus Query: 193 gatcaatccctccattttgacacggacttaaacttaaagcaaacacgacacac 245 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2246 gatcaatccctccatcttgacacggacttaaacttaaagcaaacacgacacac 2194
>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA, complete cds Length = 1181 Score = 97.6 bits (49), Expect = 2e-17 Identities = 55/57 (96%) Strand = Plus / Minus Query: 1 actgggcggaaatctttaataagaaggcataatgcccagcaataaaccaatacacaa 57 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1145 actgggcggaaatctttaatatcaaggcataatgcccagcaataaaccaatacacaa 1089 Score = 89.7 bits (45), Expect = 4e-15 Identities = 91/105 (86%), Gaps = 1/105 (0%) Strand = Plus / Minus Query: 142 aacacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagacgatcaatcc 201 |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||| || Sbjct: 1038 aacagaagcacccgtcactcaacgggcttcacggaccggaccttcaaagacgatcaaccc 979 Query: 202 ct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245 || ||| ||||||| ||||| || |||||||||||| |||||| Sbjct: 978 ctcccaccttgacaccaacttagacgtaaagcaaacacaacacac 934
>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene) Length = 1127 Score = 91.7 bits (46), Expect = 1e-15 Identities = 89/100 (89%), Gaps = 5/100 (5%) Strand = Plus / Minus Query: 24 aaggcataatgcccagcaataaaccaatacacaaagtgcccgtaataataagcaaataaa 83 ||||||||||||||||||| ||||||||||||| | |||| |||||||| ||| ||| Sbjct: 1120 aaggcataatgcccagcaaataaccaatacacaa-gcgccc---ataataagtaaacaaa 1065 Query: 84 cttaaacaacatccaggacctgactctggaccaaactgaa 123 ||||| |||||||||||||||||||||| ||||||||||| Sbjct: 1064 cttaa-caacatccaggacctgactctgaaccaaactgaa 1026 Score = 91.7 bits (46), Expect = 1e-15 Identities = 100/114 (87%), Gaps = 3/114 (2%) Strand = Plus / Minus Query: 134 ccaaactgaa-cacaagcatccgtcacctaacgggcttcacagaccggaccttcaaagac 192 |||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||| Sbjct: 1035 ccaaactgaaacacaagcatccgtcactgaacgggcttcacggaccgaaccttcaaagac 976 Query: 193 gatcaatccct-ccattttgacacggacttaaacttaaagcaaacacgacacac 245 |||||| |||| ||| ||||||| |||| ||| |||||||||||| |||||| Sbjct: 975 gatcaacccctcccaccttgacaccaactt-aacgtaaagcaaacacaacacac 923
>emb|AL808127.4| Mouse DNA sequence from clone RP23-263L18 on chromosome 2, complete sequence Length = 205838 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Plus Query: 103 ctgactctggaccaaactgaagcc 126 |||||||||||||||||||||||| Sbjct: 138293 ctgactctggaccaaactgaagcc 138316
>gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydration-stress inducible protein 1 mRNA, complete cds Length = 1315 Score = 42.1 bits (21), Expect = 0.80 Identities = 45/53 (84%) Strand = Plus / Minus Query: 2 ctgggcggaaatctttaataagaaggcataatgcccagcaataaaccaataca 54 |||||| |||||| |||||| |||||| |||||||||| ||||||||||| Sbjct: 1265 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 1213
>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence Length = 156547 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 acccaaactgaacacaagcat 152 ||||||||||||||||||||| Sbjct: 134241 acccaaactgaacacaagcat 134261
>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24 Contains part of a novel gene similar to human DECR2 (peroxisomal 2,4-dienoyl CoA reductase 2), a novel gene similar to human KIAA0665, a novel gene similar to human KIAA0683, a novel gene similar to human KIAA0590, part of a novel gene and three CpG islands, complete sequence Length = 161218 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caataaaccaatacacaaagt 60 ||||||||||||||||||||| Sbjct: 156591 caataaaccaatacacaaagt 156571
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.80 Identities = 45/53 (84%) Strand = Plus / Plus Query: 2 ctgggcggaaatctttaataagaaggcataatgcccagcaataaaccaataca 54 |||||| |||||| |||||| |||||| |||||||||| ||||||||||| Sbjct: 27184022 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 27184074
>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24, complete sequence Length = 176602 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 caataaaccaatacacaaagt 60 ||||||||||||||||||||| Sbjct: 34762 caataaaccaatacacaaagt 34782
>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence Length = 213581 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 cataatgcccagcaataaacc 48 ||||||||||||||||||||| Sbjct: 49844 cataatgcccagcaataaacc 49824
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 42.1 bits (21), Expect = 0.80 Identities = 45/53 (84%) Strand = Plus / Plus Query: 2 ctgggcggaaatctttaataagaaggcataatgcccagcaataaaccaataca 54 |||||| |||||| |||||| |||||| |||||||||| ||||||||||| Sbjct: 34693 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 34745
>dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042N13, full insert sequence Length = 1292 Score = 42.1 bits (21), Expect = 0.80 Identities = 45/53 (84%) Strand = Plus / Minus Query: 2 ctgggcggaaatctttaataagaaggcataatgcccagcaataaaccaataca 54 |||||| |||||| |||||| |||||| |||||||||| ||||||||||| Sbjct: 1277 ctgggcagaaatcattaataccaaggcagaatgcccagcccaaaaccaataca 1225
>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence Length = 221754 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aataagcaaataaacttaaa 89 |||||||||||||||||||| Sbjct: 153660 aataagcaaataaacttaaa 153679
>ref|XM_760938.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0511) partial mRNA Length = 5448 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aaataaacttaaacaacatc 96 |||||||||||||||||||| Sbjct: 4865 aaataaacttaaacaacatc 4884
>gb|AC144479.1| Pan troglodytes BAC clone RP43-126P12 from 7, complete sequence Length = 211515 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 65 gtaataataagcaaataaacttaaacaa 92 |||||||||||||||| || |||||||| Sbjct: 140814 gtaataataagcaaattaaattaaacaa 140841
>emb|CR339044.19| Zebrafish DNA sequence from clone CH211-122G23 in linkage group 5, complete sequence Length = 177385 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 taataataagcaaataaacttaaa 89 |||||||||| ||||||||||||| Sbjct: 63646 taataataagtaaataaacttaaa 63623
>emb|BX927212.11| Zebrafish DNA sequence from clone CH211-262A5 in linkage group 5, complete sequence Length = 157791 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 taataataagcaaataaacttaaa 89 |||||||||| ||||||||||||| Sbjct: 81135 taataataagtaaataaacttaaa 81112
>dbj|BS000095.1| Pan troglodytes chromosome 22 clone:RP43-177D07, map 22, complete sequences Length = 181678 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 caggacctgactctggaccaaactgaag 124 |||||| ||||||||||||| ||||||| Sbjct: 3276 caggacttgactctggaccagactgaag 3249
>dbj|BS000094.1| Pan troglodytes chromosome 22 clone:PTB-240N13, map 22, complete sequences Length = 155513 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 caggacctgactctggaccaaactgaag 124 |||||| ||||||||||||| ||||||| Sbjct: 131204 caggacttgactctggaccagactgaag 131177
>gb|AC140483.3| Mus musculus BAC clone RP24-145A22 from 1, complete sequence Length = 176649 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 aataagcaaataaacttaaa 89 |||||||||||||||||||| Sbjct: 121495 aataagcaaataaacttaaa 121476
>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105 Length = 340000 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 caggacctgactctggaccaaactgaag 124 |||||| ||||||||||||| ||||||| Sbjct: 80688 caggacttgactctggaccagactgaag 80661
>dbj|AP000469.3| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-132H24, complete sequence Length = 136804 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 caggacctgactctggaccaaactgaag 124 |||||| ||||||||||||| ||||||| Sbjct: 102805 caggacttgactctggaccagactgaag 102778 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,158,537 Number of Sequences: 3902068 Number of extensions: 2158537 Number of successful extensions: 42078 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42011 Number of HSP's gapped (non-prelim): 59 length of query: 245 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 223 effective length of database: 17,147,199,772 effective search space: 3823825549156 effective search space used: 3823825549156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)