ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart18b10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 176 bits (89), Expect = 5e-41 Identities = 211/252 (83%), Gaps = 6/252 (2%) Strand = Plus / Plus Query: 269 atcagaggtaagcagggttgctgaggaacggcagtgcagcgagagacataagcatctccg 328 |||| |||||||||||| ||||||||||||| || || ||||||||||| |||||||||| Sbjct: 27684092 atcataggtaagcaggggtgctgaggaacgggagcgcggcgagagacatgagcatctccg 27684151 Query: 329 aggtaccatt------cttggcgtgctttaccctcgaaagttgaagctgcatgtccacga 382 || ||||| ||| |||||||| || | | ||| |||||||||| |||||||| Sbjct: 27684152 tggcaccatcaggatgcttcccgtgctttgcctttgcaagctgaagctgcacgtccacga 27684211 Query: 383 aagcctgcatccgcttgagctccagatccttgaggaacttgatccgctgcctctccatct 442 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 27684212 aagcctgcatccgcttcagctccagatccttgaggaacttgatcctctgcctctccatct 27684271 Query: 443 cctcggcatgtctctgcttggcagcctccatgcgctcatacatatcagcgaatgtctcca 502 |||| || || |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct: 27684272 cctccgcgtgcctctgcttagcgaattccatgcgctcgtacatctcggcaaatgtttcga 27684331 Query: 503 ttgccatcgcta 514 |||| |||||| Sbjct: 27684332 ctgccctcgcta 27684343
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485G01 Length = 167203 Score = 176 bits (89), Expect = 5e-41 Identities = 211/252 (83%), Gaps = 6/252 (2%) Strand = Plus / Plus Query: 269 atcagaggtaagcagggttgctgaggaacggcagtgcagcgagagacataagcatctccg 328 |||| |||||||||||| ||||||||||||| || || ||||||||||| |||||||||| Sbjct: 92658 atcataggtaagcaggggtgctgaggaacgggagcgcggcgagagacatgagcatctccg 92717 Query: 329 aggtaccatt------cttggcgtgctttaccctcgaaagttgaagctgcatgtccacga 382 || ||||| ||| |||||||| || | | ||| |||||||||| |||||||| Sbjct: 92718 tggcaccatcaggatgcttcccgtgctttgcctttgcaagctgaagctgcacgtccacga 92777 Query: 383 aagcctgcatccgcttgagctccagatccttgaggaacttgatccgctgcctctccatct 442 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 92778 aagcctgcatccgcttcagctccagatccttgaggaacttgatcctctgcctctccatct 92837 Query: 443 cctcggcatgtctctgcttggcagcctccatgcgctcatacatatcagcgaatgtctcca 502 |||| || || |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct: 92838 cctccgcgtgcctctgcttagcgaattccatgcgctcgtacatctcggcaaatgtttcga 92897 Query: 503 ttgccatcgcta 514 |||| |||||| Sbjct: 92898 ctgccctcgcta 92909
>dbj|AK099396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M14, full insert sequence Length = 1377 Score = 176 bits (89), Expect = 5e-41 Identities = 211/252 (83%), Gaps = 6/252 (2%) Strand = Plus / Minus Query: 269 atcagaggtaagcagggttgctgaggaacggcagtgcagcgagagacataagcatctccg 328 |||| |||||||||||| ||||||||||||| || || ||||||||||| |||||||||| Sbjct: 1138 atcataggtaagcaggggtgctgaggaacgggagcgcggcgagagacatgagcatctccg 1079 Query: 329 aggtaccatt------cttggcgtgctttaccctcgaaagttgaagctgcatgtccacga 382 || ||||| ||| |||||||| || | | ||| |||||||||| |||||||| Sbjct: 1078 tggcaccatcaggatgcttcccgtgctttgcctttgcaagctgaagctgcacgtccacga 1019 Query: 383 aagcctgcatccgcttgagctccagatccttgaggaacttgatccgctgcctctccatct 442 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1018 aagcctgcatccgcttcagctccagatccttgaggaacttgatcctctgcctctccatct 959 Query: 443 cctcggcatgtctctgcttggcagcctccatgcgctcatacatatcagcgaatgtctcca 502 |||| || || |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct: 958 cctccgcgtgcctctgcttagcgaattccatgcgctcgtacatctcggcaaatgtttcga 899 Query: 503 ttgccatcgcta 514 |||| |||||| Sbjct: 898 ctgccctcgcta 887
>ref|NM_191988.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 999 Score = 174 bits (88), Expect = 2e-40 Identities = 207/247 (83%), Gaps = 6/247 (2%) Strand = Plus / Minus Query: 274 aggtaagcagggttgctgaggaacggcagtgcagcgagagacataagcatctccgaggta 333 |||||||||||| ||||||||||||| || || ||||||||||| |||||||||| || | Sbjct: 995 aggtaagcaggggtgctgaggaacgggagcgcggcgagagacatgagcatctccgtggca 936 Query: 334 ccatt------cttggcgtgctttaccctcgaaagttgaagctgcatgtccacgaaagcc 387 |||| ||| |||||||| || | | ||| |||||||||| ||||||||||||| Sbjct: 935 ccatcaggatgcttcccgtgctttgcctttgcaagctgaagctgcacgtccacgaaagcc 876 Query: 388 tgcatccgcttgagctccagatccttgaggaacttgatccgctgcctctccatctcctcg 447 ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 875 tgcatccgcttcagctccagatccttgaggaacttgatcctctgcctctccatctcctcc 816 Query: 448 gcatgtctctgcttggcagcctccatgcgctcatacatatcagcgaatgtctccattgcc 507 || || |||||||| || ||||||||||| ||||| || || ||||| || | |||| Sbjct: 815 gcgtgcctctgcttagcgaattccatgcgctcgtacatctcggcaaatgtttcgactgcc 756 Query: 508 atcgcta 514 |||||| Sbjct: 755 ctcgcta 749
>emb|CR383672.6| Zebrafish DNA sequence from clone DKEY-11P10 in linkage group 24, complete sequence Length = 231583 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Plus Query: 26 tgaaacaaaaactgaacaataaaa 49 |||||||||||||||||||||||| Sbjct: 81061 tgaaacaaaaactgaacaataaaa 81084
>ref|NM_121278.1| Arabidopsis thaliana DNA binding / protein binding / zinc ion binding AT5G12400 mRNA, complete cds Length = 4788 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 315 cataagcatctccgaggtaccattct 340 |||||||||||||| ||||||||||| Sbjct: 4781 cataagcatctccgtggtaccattct 4756
>ref|XM_420910.1| PREDICTED: Gallus gallus similar to FLJ23311 protein (LOC422978), mRNA Length = 3522 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 tcttcatcaaagagcagcacca 233 |||||||||||||||||||||| Sbjct: 3154 tcttcatcaaagagcagcacca 3175
>gb|AC142406.2| Mus musculus BAC clone RP24-531P16 from chromosome 9, complete sequence Length = 169938 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 aaacaaaaactgaacaataaaa 49 |||||||||||||||||||||| Sbjct: 169652 aaacaaaaactgaacaataaaa 169673
>gb|AC140436.3| Mus musculus BAC clone RP23-85O2 from chromosome 9, complete sequence Length = 142560 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 aaacaaaaactgaacaataaaa 49 |||||||||||||||||||||| Sbjct: 92190 aaacaaaaactgaacaataaaa 92211
>gb|AC124352.2| Mus musculus BAC clone RP24-477C23 from chromosome 9, complete sequence Length = 177886 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 aaacaaaaactgaacaataaaa 49 |||||||||||||||||||||| Sbjct: 127809 aaacaaaaactgaacaataaaa 127830
>gb|AC123515.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0033E08, complete sequence Length = 149241 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 73 acaaaaagagacaaaaggccaa 94 |||||||||||||||||||||| Sbjct: 87453 acaaaaagagacaaaaggccaa 87474
>gb|AC162948.4| Mus musculus BAC clone RP23-14N2 from chromosome 9, complete sequence Length = 221791 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 aaacaaaaactgaacaataaaa 49 |||||||||||||||||||||| Sbjct: 76443 aaacaaaaactgaacaataaaa 76422
>emb|AL592312.1|ATT2L20 Arabidopsis thaliana DNA chromosome 5, BAC clone T2L20 (ESSA project) Length = 98506 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 315 cataagcatctccgaggtaccattct 340 |||||||||||||| ||||||||||| Sbjct: 62983 cataagcatctccgtggtaccattct 62958
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 73 acaaaaagagacaaaaggccaa 94 |||||||||||||||||||||| Sbjct: 5751896 acaaaaagagacaaaaggccaa 5751917
>emb|BX005164.9| Mouse DNA sequence from clone RP23-257P3 on chromosome X, complete sequence Length = 168756 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 229 caccataccatgcttgactccaagta 254 |||||||||||||||| ||||||||| Sbjct: 71323 caccataccatgcttggctccaagta 71298
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 73 acaaaaagagacaaaaggccaa 94 |||||||||||||||||||||| Sbjct: 5818373 acaaaaagagacaaaaggccaa 5818394
>ref|NG_003461.1| Rattus norvegicus olfactory receptor pseudogene 1526 (Olr1526-ps) on chromosome 11 Length = 1108 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 gcaccataccatgcttgactc 248 ||||||||||||||||||||| Sbjct: 1033 gcaccataccatgcttgactc 1013
>gb|AC010482.8| Homo sapiens chromosome 5 clone CTD-2318J2, complete sequence Length = 203278 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 29 aacaaaaactgaacaataaaattat 53 |||||||| |||||||||||||||| Sbjct: 167994 aacaaaaaatgaacaataaaattat 168018
>emb|BX649600.8| Zebrafish DNA sequence from clone CH211-222M18 in linkage group 18, complete sequence Length = 228633 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 actgaaacaaaaactgaacaa 44 ||||||||||||||||||||| Sbjct: 93661 actgaaacaaaaactgaacaa 93641
>emb|AL772289.10| Zebrafish DNA sequence from clone CH211-8A9 in linkage group 13, complete sequence Length = 168459 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 catgttaactgaaacaaaaac 37 ||||||||||||||||||||| Sbjct: 92705 catgttaactgaaacaaaaac 92685
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 aaacaaaaactgaacaataaaatt 51 |||||||||||||| ||||||||| Sbjct: 1289853 aaacaaaaactgaaaaataaaatt 1289876
>gb|AC008228.5| Drosophila melanogaster clone BACR23E23, complete sequence Length = 162949 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 aaaagagacaaaaggccaacggaa 99 |||||| ||||||||||||||||| Sbjct: 746 aaaagaaacaaaaggccaacggaa 723
>gb|AC092222.2| Drosophila melanogaster clone BACR16I01, complete sequence Length = 165697 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 aaaagagacaaaaggccaacggaa 99 |||||| ||||||||||||||||| Sbjct: 33270 aaaagaaacaaaaggccaacggaa 33293
>gb|AC087806.3| Papio anubis clone RP41-187H19, complete sequence Length = 166510 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 cgctgcctctccatctcctc 446 |||||||||||||||||||| Sbjct: 137727 cgctgcctctccatctcctc 137708
>emb|CR388005.16| Zebrafish DNA sequence from clone DKEY-162B23 in linkage group 1, complete sequence Length = 197480 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 tgaaacaaaaactgaacaataaaa 49 ||||||||||||||| |||||||| Sbjct: 53086 tgaaacaaaaactgatcaataaaa 53109
>emb|CR388064.10| Zebrafish DNA sequence from clone CH211-80E15 in linkage group 16, complete sequence Length = 119301 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 caaaaagagacaaaaggcca 93 |||||||||||||||||||| Sbjct: 31010 caaaaagagacaaaaggcca 30991
>gb|AC123537.3| Macaca mulatta clone CH250-75G11, complete sequence Length = 172942 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 cgctgcctctccatctcctc 446 |||||||||||||||||||| Sbjct: 109768 cgctgcctctccatctcctc 109749
>ref|NM_001030504.1| Xenopus tropicalis tpd52l2 protein (tpd52l2), mRNA Length = 2125 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 441 ctcctcggcatgtctctgcttggcagcc 468 |||| |||||||||||| |||||||||| Sbjct: 250 ctccgcggcatgtctctccttggcagcc 223
>gb|BC093461.1| Xenopus tropicalis tpd52l2 protein, mRNA (cDNA clone MGC:97644 IMAGE:6980242), complete cds Length = 2125 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 441 ctcctcggcatgtctctgcttggcagcc 468 |||| |||||||||||| |||||||||| Sbjct: 250 ctccgcggcatgtctctccttggcagcc 223
>gb|BC095908.1| Xenopus tropicalis tpd52l2 protein, mRNA (cDNA clone MGC:97597 IMAGE:6977901), complete cds Length = 2014 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 441 ctcctcggcatgtctctgcttggcagcc 468 |||| |||||||||||| |||||||||| Sbjct: 250 ctccgcggcatgtctctccttggcagcc 223
>emb|AL359713.25| Human DNA sequence from clone RP11-95P3 on chromosome 6 Contains the 5' end of the RU2 gene, the MRS2L gene for MRS2-like magensium homeostasis factor, the 3' end of the GPLD1 gene for glycosylphosphatidylinositol specific phospholipase D1 and two CpG islands, complete sequence Length = 152966 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaaccttttaaatcatgtt 22 |||||||||||||||||||| Sbjct: 119260 aaaaccttttaaatcatgtt 119279
>emb|AL356490.14| Human DNA sequence from clone RP11-333B6 on chromosome 9, complete sequence Length = 46676 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 agctccagatccttgaggaa 419 |||||||||||||||||||| Sbjct: 36185 agctccagatccttgaggaa 36166
>ref|XM_780815.1| PREDICTED: Strongylocentrotus purpuratus similar to CDK5 regulatory subunit associated protein 3 (LOC580777), mRNA Length = 1509 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aagctcttggctggaacata 147 |||||||||||||||||||| Sbjct: 196 aagctcttggctggaacata 215
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 taactgaaacaaaaactgaa 41 |||||||||||||||||||| Sbjct: 76034 taactgaaacaaaaactgaa 76015
>emb|CR595965.1| full-length cDNA clone CS0DK008YC04 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 2840 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 acaccaaactaccaatgaacctag 206 ||||||||||||||||||| |||| Sbjct: 167 acaccaaactaccaatgaagctag 190
>gb|AC104793.4| Homo sapiens BAC clone RP11-234O6 from 4, complete sequence Length = 133244 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 acaccaaactaccaatgaacctag 206 ||||||||||||||||||| |||| Sbjct: 53747 acaccaaactaccaatgaagctag 53770
>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold Length = 1678549 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 cgctgcctctccatctcctc 446 |||||||||||||||||||| Sbjct: 1546247 cgctgcctctccatctcctc 1546228
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 agagcctatacaccaaacta 193 |||||||||||||||||||| Sbjct: 1180655 agagcctatacaccaaacta 1180636
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold Length = 1825024 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 cgctgcctctccatctcctc 446 |||||||||||||||||||| Sbjct: 1571402 cgctgcctctccatctcctc 1571383
>gb|AF289203.1|AF289203S1 Homo sapiens odorant receptor HOR3'beta1, odorant receptor HOR3'beta2, and odorant receptor HOR3'beta3 genes, complete cds Length = 36446 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 catcagaggtaagcagggtt 287 |||||||||||||||||||| Sbjct: 34223 catcagaggtaagcagggtt 34204
>gb|AC012000.3| Homo sapiens BAC clone RP11-398K16 from 2, complete sequence Length = 194472 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 agctccagatccttgaggaa 419 |||||||||||||||||||| Sbjct: 138923 agctccagatccttgaggaa 138942
>gb|AC007363.3| Homo sapiens BAC clone RP11-294L11 from 2, complete sequence Length = 198628 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ctgaaacaaaaactgaacaa 44 |||||||||||||||||||| Sbjct: 189478 ctgaaacaaaaactgaacaa 189497
>gb|BT003444.1| Drosophila melanogaster RH63623 full insert cDNA Length = 3636 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 aaaagagacaaaaggccaacggaa 99 |||||| ||||||||||||||||| Sbjct: 2666 aaaagaaacaaaaggccaacggaa 2643
>gb|AC129505.8| Homo sapiens chromosome 11, clone RP11-1205H24, complete sequence Length = 117817 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 catcagaggtaagcagggtt 287 |||||||||||||||||||| Sbjct: 43476 catcagaggtaagcagggtt 43495
>emb|BX571841.6| Zebrafish DNA sequence from clone DKEY-52H13 in linkage group 18, complete sequence Length = 105977 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 aaatcatgttaactgaaacaaaaa 36 |||||||||||||||||| ||||| Sbjct: 31165 aaatcatgttaactgaaataaaaa 31188
>gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 of 83 of the complete sequence Length = 314549 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 aaaagagacaaaaggccaacggaa 99 |||||| ||||||||||||||||| Sbjct: 13101 aaaagaaacaaaaggccaacggaa 13078
>emb|AL049829.4|CNS0000B Human chromosome 14 DNA sequence BAC R-124D2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196292 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aaatcatgttaactgaaaca 32 |||||||||||||||||||| Sbjct: 94700 aaatcatgttaactgaaaca 94719
>gb|AC138725.3| Cercopithecus aethiops clone CH252-336C2, complete sequence Length = 174407 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 cgctgcctctccatctcctc 446 |||||||||||||||||||| Sbjct: 91423 cgctgcctctccatctcctc 91404
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 agagcctatacaccaaacta 193 |||||||||||||||||||| Sbjct: 1180655 agagcctatacaccaaacta 1180636
>emb|CR847961.12| Zebrafish DNA sequence from clone DKEY-154B7 in linkage group 5, complete sequence Length = 237051 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 tgaaacaaaaactgaacaataaaa 49 ||||||||||||||| |||||||| Sbjct: 125473 tgaaacaaaaactgaccaataaaa 125450
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 agagcctatacaccaaacta 193 |||||||||||||||||||| Sbjct: 112127 agagcctatacaccaaacta 112146
>gb|AC004421.1|AC004421 Drosophila melanogaster DNA sequence (P1 DS05249 (D137)), complete sequence Length = 30488 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 aaaagagacaaaaggccaacggaa 99 |||||| ||||||||||||||||| Sbjct: 15913 aaaagaaacaaaaggccaacggaa 15890
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 agagcctatacaccaaacta 193 |||||||||||||||||||| Sbjct: 119638 agagcctatacaccaaacta 119619
>dbj|AP006689.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT27F14, TM0387, complete sequence Length = 96031 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 aaaaactgaacaataaaatt 51 |||||||||||||||||||| Sbjct: 75778 aaaaactgaacaataaaatt 75759
>gb|AC151309.2| Xenopus tropicalis clone CH216-97A24, complete sequence Length = 103750 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 aactgaaacaaaaactgaac 42 |||||||||||||||||||| Sbjct: 103164 aactgaaacaaaaactgaac 103183
>emb|X02992.1|HSTHAL1 Human DNA at least 55kb 3' to beta-globin gene with thalassemia deletion G-gamma+(A-gamma-delta-beta) 3' breakpoint Length = 540 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 catcagaggtaagcagggtt 287 |||||||||||||||||||| Sbjct: 247 catcagaggtaagcagggtt 228
>emb|X81445.2|HSHPFH6 Homo spaiens HPFH6OR gene for olfactory receptor Length = 3157 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 catcagaggtaagcagggtt 287 |||||||||||||||||||| Sbjct: 2864 catcagaggtaagcagggtt 2845 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,733,345 Number of Sequences: 3902068 Number of extensions: 4733345 Number of successful extensions: 115053 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114729 Number of HSP's gapped (non-prelim): 320 length of query: 514 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 491 effective length of database: 17,143,297,704 effective search space: 8417359172664 effective search space used: 8417359172664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
