Clone Name | rbart18b09 |
---|---|
Clone Library Name | barley_pub |
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 49.3 bits (116), Expect = 5e-06 Identities = 21/33 (63%), Positives = 28/33 (84%) Frame = -2 Query: 473 MRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 375 +R+TS+SGKK++A +VIPANWRP+ Y S VQF Sbjct: 236 IRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 48.9 bits (115), Expect = 7e-06 Identities = 20/33 (60%), Positives = 28/33 (84%) Frame = -2 Query: 473 MRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 375 +R+TS+SGKK++A ++IPANWRP+ Y S VQF Sbjct: 158 IRLTSESGKKVIAKDIIPANWRPDAVYTSNVQF 190
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/34 (58%), Positives = 27/34 (79%), Gaps = 1/34 (2%) Frame = -2 Query: 473 MRITS-DSGKKLVANNVIPANWRPNTDYRSFVQF 375 +R+TS +SGK +VA+NVIPANW+P Y+S V F Sbjct: 240 LRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 42.7 bits (99), Expect = 5e-04 Identities = 18/33 (54%), Positives = 26/33 (78%) Frame = -2 Query: 473 MRITSDSGKKLVANNVIPANWRPNTDYRSFVQF 375 +R+TS+ G LV ++VIPANW+P+T Y S +QF Sbjct: 212 IRLTSEGGAHLVQDDVIPANWKPDTVYTSKLQF 244
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 42.0 bits (97), Expect = 8e-04 Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 1/34 (2%) Frame = -2 Query: 473 MRITS-DSGKKLVANNVIPANWRPNTDYRSFVQF 375 +R+TS +S K +VA NVIPANW+P+ YRS V F Sbjct: 226 IRLTSGESHKVIVAYNVIPANWKPDESYRSIVNF 259
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -2 Query: 473 MRITSD-SGKKLVANNVIPANWRPNTDYRSFVQF 375 +R+TS SGKK++A VIP W P Y S V F Sbjct: 224 IRLTSAVSGKKIIAKGVIPEKWSPGAIYHSKVNF 257
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 33.1 bits (74), Expect = 0.37 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -2 Query: 464 TSDSGKKLVANNVIPANWRPNTDYRSFVQFS 372 T +GK L A +V+P NW P Y S + FS Sbjct: 231 TLSAGKTLSATDVVPRNWAPKATYSSRLNFS 261
>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)| Length = 866 Score = 32.3 bits (72), Expect = 0.64 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Frame = -1 Query: 474 HAHHQRLRQEAGGQQCHPGQLEAQHRLPL------LRPVQLIGPDRPMSGHVRLHHARMH 313 H H Q+ +Q+ QQ HPGQ + Q L L + + P S H + Sbjct: 189 HTHQQQQQQQQ--QQQHPGQQQHQLNCTLSNGGGALYTISSVHQFGPASNHNTSSSSPSS 246 Query: 312 ACMRSGPSAGCSSS 271 + S P +GCSS+ Sbjct: 247 SAAHSSPDSGCSSA 260
>NPYR_DROME (P25931) Neuropeptide Y receptor (NPY-R) (PR4 receptor)| Length = 464 Score = 32.0 bits (71), Expect = 0.83 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 9/51 (17%) Frame = -3 Query: 130 WF---ACALP-PTDSVYGVPCITWH-----YLCVTKIPNQSYKLYYTYSLF 5 WF A ALP P S +P WH Y+C P+++ + YYT SLF Sbjct: 229 WFIALATALPIPIVSGLDIPMSPWHTKCEKYICREMWPSRTQEYYYTLSLF 279
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -2 Query: 464 TSDSGKKLVANNVIPANWRPNTDYRSFVQFS 372 T + K L A +VIP+NW P Y S + FS Sbjct: 238 TLSNNKTLSATDVIPSNWVPKATYTSRLNFS 268
>SUR2_CAEEL (Q10669) Protein sur-2| Length = 1587 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 14/67 (20%) Frame = -1 Query: 471 AHHQRLRQEAGGQQCHPGQLEAQHRLPLLRPVQLIGPDRPMS---------GHVRL---- 331 + HQ ++Q++ HP Q + QH++P + Q +GP P + GHV + Sbjct: 1465 SQHQTIQQQSN----HPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSGPVGHVPMQYGM 1520 Query: 330 -HHARMH 313 HH + H Sbjct: 1521 GHHMQQH 1527
>MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I)| Length = 263 Score = 30.8 bits (68), Expect = 1.9 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 473 MRITSDSGKKLVANNVIPANWRPNTDYRS 387 +R T++ G K A +VIP W+ +T Y S Sbjct: 234 VRYTTEGGTKTEAEDVIPEGWKADTSYES 262
>FADL_SHIFL (P59741) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 464 TSDSGKKLVANNVIPANWRPNTDY 393 TS SG+ L A+N+ P W PN + Sbjct: 88 TSPSGRSLKADNIAPTAWVPNMHF 111
>FADL_ECOLI (P10384) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 464 TSDSGKKLVANNVIPANWRPNTDY 393 TS SG+ L A+N+ P W PN + Sbjct: 88 TSPSGRSLKADNIAPTAWVPNMHF 111
>FADL_ECO57 (Q8XCN6) Long-chain fatty acid transport protein precursor (Outer| membrane fadL protein) (Outer membrane flp protein) Length = 448 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 464 TSDSGKKLVANNVIPANWRPNTDY 393 TS SG+ L A+N+ P W PN + Sbjct: 88 TSPSGRSLKADNIAPTAWVPNMHF 111
>NPY5R_HUMAN (Q15761) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) (NPYY5) Length = 455 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -3 Query: 118 ALPPTDSVYGVPCITWHYLCVTKIPNQSYKLYYTYSL 8 +L +G ++ YLCV P+ SY++ +T SL Sbjct: 189 SLVELQETFGSALLSSRYLCVESWPSDSYRIAFTISL 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,835,529 Number of Sequences: 219361 Number of extensions: 1323628 Number of successful extensions: 3827 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3826 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)