ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1K1849_HUMAN (Q96JH8) Protein KIAA1849 30 2.2
2B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band... 29 3.7
3CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell ... 28 6.4
4MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1 28 8.3

>K1849_HUMAN (Q96JH8) Protein KIAA1849|
          Length = 1073

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = +2

Query: 197 EASSPHEVVLQQPLRIRHHLLDAVERAKPLGPGRQQRRRSGVKQPHAAHGL------GRL 358
           EA+   + + Q  L +RH L     RA P  PGR     SG  QP    G+      G L
Sbjct: 786 EANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRP---GSGASQPVCPEGMHHVVLDGHL 842

Query: 359 EPP 367
           E P
Sbjct: 843 EAP 845



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>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 260 DAVERAKPLGPGRQQRRRSGVKQPHAAHGLGRLEPPDEAA 379
           DA  R  P GPGR+ RRR G     A   +   E  +E A
Sbjct: 92  DARRRKTPQGPGRKPRRRPGASPTGATPTIEEGEEDEEEA 131



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>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface|
           antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte
           antigen Ly-37)
          Length = 344

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 194 PEASSPHEVVLQQPLRIRHHLLDAVERAKPLGPGRQQRRRSGVKQP 331
           P A++ + V LQ P    HHL     R  PL PG + R     K+P
Sbjct: 263 PAAAAQNSVALQAPPPPGHHLQTPGHR--PLPPGHRTREHQQKKRP 306



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>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1|
          Length = 1707

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 272  RAKPLGPGRQQR-RRSGVKQPHAAHGLGRLEPPDEAAEHDVHE 397
            +  PL PGRQQR R S    P      G  EPPD      V E
Sbjct: 924  KGDPLSPGRQQRGRLSCQTTPAGKASRGDPEPPDHCLFSSVPE 966


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,666,110
Number of Sequences: 219361
Number of extensions: 703669
Number of successful extensions: 1738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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