ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart18b07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF244702.1|AF244702 Zea mays glutathione S-transferase GST 37 mRNA, complete cds Length = 1074 Score = 99.6 bits (50), Expect = 7e-18 Identities = 170/210 (80%) Strand = Plus / Minus Query: 188 cggcagcccgaggcgagctcgcctcatgaggttgtactccaacagcctctgcggatccgg 247 ||||||||| | ||||||||||| || ||| ||||||| |||||||||| || || Sbjct: 728 cggcagcccacgacgagctcgcctaatcttgttatactccagcagcctctgcacgtcagg 669 Query: 248 catcacctccttgacgccgtggagcgcgcgaaaccgctcggcccaggccgccagcagcgg 307 ||||||||| ||||||||| ||||||| ||||| || ||||| |||||||||||||| Sbjct: 668 tatcacctccctgacgccgtcgagcgcggcgaaccggtccgcccacgccgccagcagcgg 609 Query: 308 cgtcgcagcggcgtcaagcagcctcacgccgcacatggcctcggacgtcttgagccaccc 367 |||| |||| ||| | | ||||||||| ||||| ||||| |||| |||||||| Sbjct: 608 cgtcttggcggggtcgatgaccctcacgccacacatcgcctcagacgcgcgcagccaccc 549 Query: 368 gacgaagccgccgagcacgacgtccacgag 397 || ||||||||| ||||||||||||||||| Sbjct: 548 gaggaagccgcctagcacgacgtccacgag 519
>gb|AF244687.1|AF244687 Zea mays glutathione S-transferase GST 22 mRNA, partial cds Length = 803 Score = 67.9 bits (34), Expect = 2e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 270 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtcgcagcggcgtcaagcagc 329 ||||||| |||||||| ||||| |||||||||||||||||| ||||||| || | Sbjct: 593 agcgcgcagaaccgctccgcccacgccgccagcagcggcgtcctgccggcgtcgagggcc 534 Query: 330 ctcacgccgcacatggcctcggacgtcttgagccacccgacgaagccgccgagcacgacg 389 |||| ||||| |||||||||| | | |||||||| || | |||||||||||||||| Sbjct: 533 ttcaccccgcagatggcctcggtggcgtacagccacccaacaaggccgccgagcacgacg 474 Query: 390 tccacgagccccac 403 || ||||||||||| Sbjct: 473 tcgacgagccccac 460
>gb|AY104131.1| Zea mays PCO099552 mRNA sequence Length = 831 Score = 67.9 bits (34), Expect = 2e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 270 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtcgcagcggcgtcaagcagc 329 ||||||| |||||||| ||||| |||||||||||||||||| ||||||| || | Sbjct: 631 agcgcgcagaaccgctccgcccacgccgccagcagcggcgtcctgccggcgtcgagggcc 572 Query: 330 ctcacgccgcacatggcctcggacgtcttgagccacccgacgaagccgccgagcacgacg 389 |||| ||||| |||||||||| | | |||||||| || | |||||||||||||||| Sbjct: 571 ttcaccccgcagatggcctcggtggcgtacagccacccaacaaggccgccgagcacgacg 512 Query: 390 tccacgagccccac 403 || ||||||||||| Sbjct: 511 tcgacgagccccac 498
>ref|NM_197504.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBa0053C23.1), mRNA Length = 986 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacgagccc 400 |||||||| | ||||||||||||||||||| |||||||| Sbjct: 567 ccacccgaggtagccgccgagcacgacgtcgacgagccc 529
>gb|AF402797.1| Oryza sativa (japonica cultivar-group) clone C12085_1A putative glutathione S-transferase OsGSTU10 mRNA, complete cds Length = 940 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacgagccc 400 |||||||| | ||||||||||||||||||| |||||||| Sbjct: 573 ccacccgaggtagccgccgagcacgacgtcgacgagccc 535
>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence Length = 132900 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 362 ccacccgacgaagccgccgagcacgacgtccacgagccc 400 |||||||| | ||||||||||||||||||| |||||||| Sbjct: 39155 ccacccgaggtagccgccgagcacgacgtcgacgagccc 39193 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 362 ccacccgacgaagccgccgagcacgacgtccacga 396 |||||||| | ||||||||||||||||||| |||| Sbjct: 51171 ccacccgaggtagccgccgagcacgacgtcgacga 51205 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 282 cgctcggcccaggccgccagcagcggcgtc 311 ||||| |||||||||||||| ||||||||| Sbjct: 74797 cgctccgcccaggccgccagaagcggcgtc 74826
>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence Length = 194361 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacgagccc 400 |||||||| | ||||||||||||||||||| |||||||| Sbjct: 5071 ccacccgaggtagccgccgagcacgacgtcgacgagccc 5033
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacgagccc 400 |||||||| | ||||||||||||||||||| |||||||| Sbjct: 20127336 ccacccgaggtagccgccgagcacgacgtcgacgagccc 20127298 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 279 aaccgctcggcccaggccgccagcagcggcgtc 311 |||||||| ||||| |||||||||||||||||| Sbjct: 10883671 aaccgctccgcccacgccgccagcagcggcgtc 10883639 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacga 396 |||||||| | ||||||||||||||||||| |||| Sbjct: 20115320 ccacccgaggtagccgccgagcacgacgtcgacga 20115286 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcggcgtc 311 ||||| |||||||||||||| ||||||||| Sbjct: 20091694 cgctccgcccaggccgccagaagcggcgtc 20091665 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 20032793 cgctcggcccacgccgccagcagcgg 20032768 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| ||| ||||||||||||||||||||| Sbjct: 20032713 ccacgcgaggaagccgccgagcacgacgtc 20032684 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 19979618 cgctcggcccacgccgccagcagcgg 19979593 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 19970232 ccacgcgacgaagcctccgagcacgacgtc 19970203 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 19919607 ccacgcgacgaagcctccgagcacgacgtc 19919578
>dbj|AK108900.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F05, full insert sequence Length = 983 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 362 ccacccgacgaagccgccgagcacgacgtccacgagccc 400 |||||||| | ||||||||||||||||||| |||||||| Sbjct: 207 ccacccgaggtagccgccgagcacgacgtcgacgagccc 245
>dbj|AK061233.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B03, full insert sequence Length = 950 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacgagccc 400 |||||||| | ||||||||||||||||||| |||||||| Sbjct: 580 ccacccgaggtagccgccgagcacgacgtcgacgagccc 542
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacgagccc 400 |||||||| | ||||||||||||||||||| |||||||| Sbjct: 20138612 ccacccgaggtagccgccgagcacgacgtcgacgagccc 20138574 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 279 aaccgctcggcccaggccgccagcagcggcgtc 311 |||||||| ||||| |||||||||||||||||| Sbjct: 10889711 aaccgctccgcccacgccgccagcagcggcgtc 10889679 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacga 396 |||||||| | ||||||||||||||||||| |||| Sbjct: 20126596 ccacccgaggtagccgccgagcacgacgtcgacga 20126562 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcggcgtc 311 ||||| |||||||||||||| ||||||||| Sbjct: 20102970 cgctccgcccaggccgccagaagcggcgtc 20102941 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 20044069 cgctcggcccacgccgccagcagcgg 20044044 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| ||| ||||||||||||||||||||| Sbjct: 20043989 ccacgcgaggaagccgccgagcacgacgtc 20043960 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 19990894 cgctcggcccacgccgccagcagcgg 19990869 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 19981508 ccacgcgacgaagcctccgagcacgacgtc 19981479 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 19930883 ccacgcgacgaagcctccgagcacgacgtc 19930854
>ref|NM_196067.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0089F16.14), mRNA Length = 747 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 279 aaccgctcggcccaggccgccagcagcggcgtc 311 |||||||| ||||| |||||||||||||||||| Sbjct: 638 aaccgctccgcccacgccgccagcagcggcgtc 606
>ref|NM_192150.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 720 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 356 cttgagccacccgacgaagccgccgagcacgacgtccacgagccc 400 ||||| |||| | ||||||||||||| ||||||||| |||||||| Sbjct: 537 cttgaaccacaccacgaagccgccgaccacgacgtcgacgagccc 493
>gb|BT009283.1| Triticum aestivum clone wlm0.pk0005.d9:fis, full insert mRNA sequence Length = 999 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 243 tccggcatcacctccttgacgccgtggagcgcgcgaaaccgctcggcccaggccgccagc 302 ||||| || ||||||||| || ||| ||||||| ||| ||||| ||||||||||||||| Sbjct: 634 tccgggatgacctccttggcggcgtcgagcgcggcaaagcgctccgcccaggccgccagc 575 Query: 303 a 303 | Sbjct: 574 a 574
>gb|AC093181.5| Oryza sativa chromosome 10 BAC OSJNBb0089F16 genomic sequence, complete sequence Length = 154696 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 279 aaccgctcggcccaggccgccagcagcggcgtc 311 |||||||| ||||| |||||||||||||||||| Sbjct: 41781 aaccgctccgcccacgccgccagcagcggcgtc 41749
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 356 cttgagccacccgacgaagccgccgagcacgacgtccacgagccc 400 ||||| |||| | ||||||||||||| ||||||||| |||||||| Sbjct: 28560229 cttgaaccacaccacgaagccgccgaccacgacgtcgacgagccc 28560273 Score = 44.1 bits (22), Expect = 0.35 Identities = 37/42 (88%) Strand = Plus / Plus Query: 270 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 311 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 21111148 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 21111189
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 356 cttgagccacccgacgaagccgccgagcacgacgtccacgagccc 400 ||||| |||| | ||||||||||||| ||||||||| |||||||| Sbjct: 86668 cttgaaccacaccacgaagccgccgaccacgacgtcgacgagccc 86712
>dbj|AK106938.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C12, full insert sequence Length = 1000 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 279 aaccgctcggcccaggccgccagcagcggcgtc 311 |||||||| ||||| |||||||||||||||||| Sbjct: 100 aaccgctccgcccacgccgccagcagcggcgtc 132
>dbj|AK064650.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-D12, full insert sequence Length = 1047 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 356 cttgagccacccgacgaagccgccgagcacgacgtccacgagccc 400 ||||| |||| | ||||||||||||| ||||||||| |||||||| Sbjct: 713 cttgaaccacaccacgaagccgccgaccacgacgtcgacgagccc 669
>ref|NM_197500.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.2), mRNA Length = 1038 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacga 396 |||||||| | ||||||||||||||||||| |||| Sbjct: 597 ccacccgaggtagccgccgagcacgacgtcgacga 563
>gb|AF309376.1| Oryza sativa (japonica cultivar-group) clone S14511 putative glutathione S-transferase OsGSTU6 mRNA, complete cds Length = 1042 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacga 396 |||||||| | ||||||||||||||||||| |||| Sbjct: 618 ccacccgaggtagccgccgagcacgacgtcgacga 584
>dbj|AK111429.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-H06, full insert sequence Length = 1401 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Plus Query: 362 ccacccgacgaagccgccgagcacgacgtccacga 396 |||||||| | ||||||||||||||||||| |||| Sbjct: 224 ccacccgaggtagccgccgagcacgacgtcgacga 258
>dbj|AK103699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136L03, full insert sequence Length = 1040 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacga 396 |||||||| | ||||||||||||||||||| |||| Sbjct: 605 ccacccgaggtagccgccgagcacgacgtcgacga 571
>dbj|AK059760.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-F02, full insert sequence Length = 1049 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacga 396 |||||||| | ||||||||||||||||||| |||| Sbjct: 601 ccacccgaggtagccgccgagcacgacgtcgacga 567
>dbj|AK059609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F04, full insert sequence Length = 623 Score = 46.1 bits (23), Expect = 0.090 Identities = 32/35 (91%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtccacga 396 |||||||| | ||||||||||||||||||| |||| Sbjct: 317 ccacccgaggtagccgccgagcacgacgtcgacga 283
>ref|NM_197493.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.27), mRNA Length = 708 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcggcgtc 311 ||||| |||||||||||||| ||||||||| Sbjct: 596 cgctccgcccaggccgccagaagcggcgtc 567
>ref|NM_197473.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBa0034L04.25), mRNA Length = 699 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 596 cgctcggcccacgccgccagcagcgg 571 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| ||| ||||||||||||||||||||| Sbjct: 516 ccacgcgaggaagccgccgagcacgacgtc 487
>ref|NM_197462.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBa0034L04.9), mRNA Length = 758 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 652 cgctcggcccacgccgccagcagcgg 627
>ref|NM_197460.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBa0034L04.36), mRNA Length = 720 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 516 ccacgcgacgaagcctccgagcacgacgtc 487
>ref|NM_197445.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0005J14.12), mRNA Length = 699 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 516 ccacgcgacgaagcctccgagcacgacgtc 487
>ref|NM_193483.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 753 Score = 44.1 bits (22), Expect = 0.35 Identities = 37/42 (88%) Strand = Plus / Minus Query: 270 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 311 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 653 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 612
>gb|AF402799.1| Oryza sativa (japonica cultivar-group) clone RICS11381A putative glutathione S-transferase OsGSTU12 mRNA, complete cds Length = 981 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 687 cgctcggcccacgccgccagcagcgg 662
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 137958 ccacgcgacgaagcctccgagcacgacgtc 137987 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 128572 cgctcggcccacgccgccagcagcgg 128597 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| ||| ||||||||||||||||||||| Sbjct: 75477 ccacgcgaggaagccgccgagcacgacgtc 75506 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 75397 cgctcggcccacgccgccagcagcgg 75422 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 282 cgctcggcccaggccgccagcagcggcgtc 311 ||||| |||||||||||||| ||||||||| Sbjct: 16496 cgctccgcccaggccgccagaagcggcgtc 16525
>ref|NM_019185.1| Rattus norvegicus GATA binding protein 6 (Gata6), mRNA Length = 1844 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 166 gctgcggcggccgcggcgtcagcggcagcc 195 |||||||||||||||||| | ||||||||| Sbjct: 201 gctgcggcggccgcggcggccgcggcagcc 230
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 66436 ccacgcgacgaagcctccgagcacgacgtc 66465 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 15811 ccacgcgacgaagcctccgagcacgacgtc 15840 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 6425 cgctcggcccacgccgccagcagcgg 6450
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 44.1 bits (22), Expect = 0.35 Identities = 37/42 (88%) Strand = Plus / Plus Query: 270 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 311 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 78693 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 78734
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 44.1 bits (22), Expect = 0.35 Identities = 37/42 (88%) Strand = Plus / Plus Query: 270 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 311 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 8657 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 8698
>dbj|AK111021.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G10, full insert sequence Length = 975 Score = 44.1 bits (22), Expect = 0.35 Identities = 37/42 (88%) Strand = Plus / Minus Query: 270 agcgcgcgaaaccgctcggcccaggccgccagcagcggcgtc 311 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 694 agcgcgcagaaccgctccacccacgccgccagcagcggcgtc 653
>dbj|AK108376.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E01, full insert sequence Length = 1066 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 672 cgctcggcccacgccgccagcagcgg 647 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| ||| ||||||||||||||||||||| Sbjct: 592 ccacgcgaggaagccgccgagcacgacgtc 563
>dbj|AK107435.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A11, full insert sequence Length = 1151 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacgtc 391 |||| |||||||||| |||||||||||||| Sbjct: 680 ccacgcgacgaagcctccgagcacgacgtc 651
>dbj|AK107032.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B04, full insert sequence Length = 1159 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcggcgtc 311 ||||| |||||||||||||| ||||||||| Sbjct: 691 cgctccgcccaggccgccagaagcggcgtc 662
>dbj|AK063773.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C09, full insert sequence Length = 987 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 282 cgctcggcccaggccgccagcagcgg 307 ||||||||||| |||||||||||||| Sbjct: 683 cgctcggcccacgccgccagcagcgg 658
>gb|L22760.1|RATGATGT1X Rat DNA binding protein (GATA-GT1) mRNA, complete cds Length = 1844 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 166 gctgcggcggccgcggcgtcagcggcagcc 195 |||||||||||||||||| | ||||||||| Sbjct: 201 gctgcggcggccgcggcggccgcggcagcc 230
>gb|AC008556.5| Homo sapiens chromosome 19 clone CTC-526N19, complete sequence Length = 142515 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 138 tatttatatagagagatttatatct 162 ||||||||||||||||| ||||||| Sbjct: 80026 tatttatatagagagatatatatct 80050
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 gcgtcgcagcggcgtcaagca 327 ||||||||||||||||||||| Sbjct: 554797 gcgtcgcagcggcgtcaagca 554817
>gb|AC013287.11| Homo sapiens chromosome 10 clone RP11-76F14, complete sequence Length = 174578 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 tatttatatagagagatttat 158 ||||||||||||||||||||| Sbjct: 101653 tatttatatagagagatttat 101633
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 cgcggcgtcagcggcagcccg 197 ||||||||||||||||||||| Sbjct: 75369 cgcggcgtcagcggcagcccg 75389
>ref|XM_471598.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2241 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tgctgcggcggccgcggcgt 184 |||||||||||||||||||| Sbjct: 65 tgctgcggcggccgcggcgt 46
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cggccgcggcgtcagcggca 192 |||||||||||||||||||| Sbjct: 102087 cggccgcggcgtcagcggca 102106
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 cccgacgaagccgccgagca 384 |||||||||||||||||||| Sbjct: 2841384 cccgacgaagccgccgagca 2841403
>gb|AC159502.12| Mus musculus 10 BAC RP23-113B7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226276 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 ttatttatatagagagatttatat 160 |||| ||||||||||||||||||| Sbjct: 189705 ttatatatatagagagatttatat 189728
>ref|XM_988556.1| PREDICTED: Mus musculus hypothetical protein LOC667134 (LOC667134), mRNA Length = 453 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 169 gcggcggccgcggcgtcagcggcagccc 196 |||||||| |||||| |||||||||||| Sbjct: 326 gcggcggcggcggcggcagcggcagccc 353
>gb|AC099558.2| Homo sapiens chromosome 3 clone RP11-680P23, complete sequence Length = 180049 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 atttatatagagagatttat 158 |||||||||||||||||||| Sbjct: 128015 atttatatagagagatttat 127996
>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13 Length = 341957 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cggccgcggcgtcagcggca 192 |||||||||||||||||||| Sbjct: 102097 cggccgcggcgtcagcggca 102116
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 cccgacgaagccgccgagca 384 |||||||||||||||||||| Sbjct: 1023556 cccgacgaagccgccgagca 1023575
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cggccgcggcgtcagcggca 192 |||||||||||||||||||| Sbjct: 102132 cggccgcggcgtcagcggca 102151
>emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065J03, complete sequence Length = 144146 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tgctgcggcggccgcggcgt 184 |||||||||||||||||||| Sbjct: 2777 tgctgcggcggccgcggcgt 2758
>gb|AC015689.12| Homo sapiens chromosome 11, clone RP11-23F23, complete sequence Length = 182522 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 167 ctgcggcggccgcggcgtcagcggcagc 194 ||||||||||||||||| | |||||||| Sbjct: 29792 ctgcggcggccgcggcggcggcggcagc 29765
>gb|AC090888.4| Homo sapiens chromosome 15 clone CTD-2014N11 map 15q21.1, complete sequence Length = 140589 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 ttatatagagagatttatatctat 164 |||||||||||||| ||||||||| Sbjct: 63147 ttatatagagagatatatatctat 63170
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gcggccgcggcgtcagcggc 191 |||||||||||||||||||| Sbjct: 67689 gcggccgcggcgtcagcggc 67670
>gb|AC147364.7| Medicago truncatula clone mth2-68g24, complete sequence Length = 109540 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgatcctagccttatttata 145 |||||||||||||||||||| Sbjct: 44557 tgatcctagccttatttata 44576
>dbj|AK075118.1| Homo sapiens cDNA FLJ90637 fis, clone PLACE1003772, weakly similar to EXTENSIN PRECURSOR Length = 2273 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 169 gcggcggccgcggcgtcagcggcagcccgagg 200 |||||||| |||||| ||||||||||| |||| Sbjct: 742 gcggcggcggcggcggcagcggcagccagagg 711
>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence Length = 206537 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 atttatatagagagatttat 158 |||||||||||||||||||| Sbjct: 196179 atttatatagagagatttat 196198
>gb|AC096948.2| Homo sapiens chromosome 1 clone RP4-809J13, complete sequence Length = 115596 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 169 gcggcggccgcggcgtcagcggcagcccgagg 200 |||||||| |||||| ||||||||||| |||| Sbjct: 23359 gcggcggcggcggcggcagcggcagccagagg 23390
>gb|AC091117.5| Homo sapiens chromosome 15 clone RP11-109D20 map 15q15, complete sequence Length = 181312 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 ttatatagagagatttatatctat 164 |||||||||||||| ||||||||| Sbjct: 11702 ttatatagagagatatatatctat 11725
>gb|AF391285.1|AF391285 Homo sapiens 11p15.5 clone LOH11A, partial sequence Length = 160199 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 167 ctgcggcggccgcggcgtcagcggcagc 194 ||||||||||||||||| | |||||||| Sbjct: 40263 ctgcggcggccgcggcggcggcggcagc 40236
>ref|NM_001039463.1| Homo sapiens chromosome 1 open reading frame 118 (C1orf118), mRNA Length = 2273 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 169 gcggcggccgcggcgtcagcggcagcccgagg 200 |||||||| |||||| ||||||||||| |||| Sbjct: 742 gcggcggcggcggcggcagcggcagccagagg 711
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 cccgacgaagccgccgagca 384 |||||||||||||||||||| Sbjct: 613710 cccgacgaagccgccgagca 613729
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tgctgcggcggccgcggcgt 184 |||||||||||||||||||| Sbjct: 12591448 tgctgcggcggccgcggcgt 12591467
>dbj|AB012807.2| Mus musculus Ugcg gene for UDP-glucose ceramide glucosyltransferase, complete cds Length = 3117 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 169 gcggcggccgcggcgtcagcggcagccc 196 |||||||| |||||| |||||||||||| Sbjct: 397 gcggcggcggcggcggcagcggcagccc 424
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gccgccgagcacgacgtcca 393 |||||||||||||||||||| Sbjct: 2328413 gccgccgagcacgacgtcca 2328432
>gb|AC138392.2| Homo sapiens chromosome 1 clone RP11-181C21, complete sequence Length = 161502 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 169 gcggcggccgcggcgtcagcggcagcccgagg 200 |||||||| |||||| ||||||||||| |||| Sbjct: 109953 gcggcggcggcggcggcagcggcagccagagg 109984
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 cggcccaggccgccagcagc 305 |||||||||||||||||||| Sbjct: 771355 cggcccaggccgccagcagc 771336
>dbj|AK062593.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H04, full insert sequence Length = 2405 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tgctgcggcggccgcggcgt 184 |||||||||||||||||||| Sbjct: 105 tgctgcggcggccgcggcgt 86
>emb|AL808112.34| Mouse DNA sequence from clone RP23-57N22 on chromosome 4, complete sequence Length = 236158 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 169 gcggcggccgcggcgtcagcggcagccc 196 |||||||| |||||| |||||||||||| Sbjct: 73613 gcggcggcggcggcggcagcggcagccc 73640
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ttgacgccgtggagcgcgcg 277 |||||||||||||||||||| Sbjct: 3258892 ttgacgccgtggagcgcgcg 3258873
>emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0096E05, complete sequence Length = 129908 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tgctgcggcggccgcggcgt 184 |||||||||||||||||||| Sbjct: 6434 tgctgcggcggccgcggcgt 6453
>dbj|D10861.1|RICORFC Oryza sativa (japonica cultivar-group) mRNA for chilling tolerance related protein, complete cds, clone:pBC591 Length = 964 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 362 ccacccgacgaagccgccgagcacgacg 389 |||||||| | ||||||||||||||||| Sbjct: 560 ccacccgaggtagccgccgagcacgacg 533 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,568,638 Number of Sequences: 3902068 Number of extensions: 2568638 Number of successful extensions: 64993 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63279 Number of HSP's gapped (non-prelim): 1711 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
