ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart18b02 |
|---|---|
| Clone Library Name | barley_pub |
>DHR15_WHEAT (Q00742) Dehydrin Rab15| Length = 149 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGIMDKIKEKLPGQH Sbjct: 133 EKKGIMDKIKEKLPGQH 149 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -3 Query: 338 KKGIMDKIKEKLPGQH 291 KKG+ +KIKEKLPG H Sbjct: 74 KKGMKEKIKEKLPGGH 89
>DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein)| Length = 168 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGIMDKIKEKLPGQH Sbjct: 152 EKKGIMDKIKEKLPGQH 168 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = -3 Query: 338 KKGIMDKIKEKLPGQH 291 KKGI +KIKEKLPG H Sbjct: 94 KKGIKEKIKEKLPGGH 109
>DHR21_ORYSA (P12253) Water stress-inducible protein Rab21| Length = 172 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGIMDKIKEKLPGQH Sbjct: 156 EKKGIMDKIKEKLPGQH 172 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -3 Query: 338 KKGIMDKIKEKLPG 297 KKGI +KIKEKLPG Sbjct: 100 KKGIKEKIKEKLPG 113
>DHN4_HORVU (P12949) Dehydrin DHN4 (B18)| Length = 225 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGIMDKIKEKLPGQH Sbjct: 209 EKKGIMDKIKEKLPGQH 225 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = -3 Query: 338 KKGIMDKIKEKLPGQH 291 KKGI +KIKEKLPG H Sbjct: 78 KKGIKEKIKEKLPGGH 93
>DHN3_HORVU (P12948) Dehydrin DHN3 (B17)| Length = 161 Score = 39.3 bits (90), Expect = 0.004 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGIMDKIKEKLPGQH Sbjct: 145 EKKGIMDKIKEKLPGQH 161 Score = 31.6 bits (70), Expect = 0.83 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = -3 Query: 338 KKGIMDKIKEKLPGQH 291 KKG+ DKIKEKLPG H Sbjct: 76 KKGLKDKIKEKLPGGH 91
>DH16C_ORYSA (P22912) Dehydrin Rab16C| Length = 164 Score = 37.7 bits (86), Expect = 0.012 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG MDKIKEKLPGQH Sbjct: 148 EKKGFMDKIKEKLPGQH 164 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -3 Query: 338 KKGIMDKIKEKLPG 297 KKGI +KIKEKLPG Sbjct: 88 KKGIKEKIKEKLPG 101
>DH16B_ORYSA (P22911) Dehydrin Rab16B| Length = 164 Score = 37.7 bits (86), Expect = 0.012 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG MDKIKEKLPGQH Sbjct: 148 EKKGFMDKIKEKLPGQH 164 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -3 Query: 338 KKGIMDKIKEKLPG 297 KKGI +KIKEKLPG Sbjct: 90 KKGIKEKIKEKLPG 103
>DH16D_ORYSA (P22913) Dehydrin Rab16D| Length = 151 Score = 37.7 bits (86), Expect = 0.012 Identities = 16/17 (94%), Positives = 17/17 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGI+DKIKEKLPGQH Sbjct: 135 EKKGIVDKIKEKLPGQH 151 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/14 (85%), Positives = 13/14 (92%) Frame = -3 Query: 338 KKGIMDKIKEKLPG 297 KKGI +KIKEKLPG Sbjct: 73 KKGIKEKIKEKLPG 86
>DHA_CRAPL (P22238) Desiccation-related protein clone PCC27-04| Length = 117 Score = 37.4 bits (85), Expect = 0.015 Identities = 15/17 (88%), Positives = 17/17 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+M+KIKEKLPGQH Sbjct: 101 EKKGVMEKIKEKLPGQH 117
>ERD10_ARATH (P42759) Dehydrin ERD10 (Low-temperature-induced protein LTI45)| Length = 260 Score = 35.4 bits (80), Expect = 0.058 Identities = 15/17 (88%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG MDKIKEKLPG H Sbjct: 229 EKKGFMDKIKEKLPGYH 245 Score = 32.7 bits (73), Expect = 0.37 Identities = 14/15 (93%), Positives = 14/15 (93%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 EKKG MDKIKEKLPG Sbjct: 186 EKKGFMDKIKEKLPG 200
>CS120_WHEAT (P46525) Cold-shock protein CS120| Length = 391 Score = 35.0 bits (79), Expect = 0.075 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKK +MDKIK+KLPGQH Sbjct: 375 EKKSLMDKIKDKLPGQH 391 Score = 35.0 bits (79), Expect = 0.075 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGIM+KIKEKLPG H Sbjct: 10 EKKGIMEKIKEKLPGGH 26 Score = 32.7 bits (73), Expect = 0.37 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+M+ IKEKLPG H Sbjct: 285 EKKGVMENIKEKLPGGH 301 Score = 32.7 bits (73), Expect = 0.37 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+M+ IKEKLPG H Sbjct: 157 EKKGVMENIKEKLPGGH 173 Score = 31.6 bits (70), Expect = 0.83 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+M+ IK+KLPG H Sbjct: 221 EKKGVMENIKDKLPGGH 237 Score = 31.6 bits (70), Expect = 0.83 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+M+ IK+KLPG H Sbjct: 73 EKKGVMENIKDKLPGGH 89
>CS66_WHEAT (P46526) Cold shock protein CS66| Length = 469 Score = 35.0 bits (79), Expect = 0.075 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKK +MDKIK+KLPGQH Sbjct: 453 EKKSLMDKIKDKLPGQH 469 Score = 35.0 bits (79), Expect = 0.075 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGIM+KIKEKLPG H Sbjct: 10 EKKGIMEKIKEKLPGGH 26 Score = 31.6 bits (70), Expect = 0.83 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+M+ IK+KLPG H Sbjct: 73 EKKGVMENIKDKLPGGH 89 Score = 31.2 bits (69), Expect = 1.1 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+M+ IK+KLPG H Sbjct: 235 EKKGLMENIKDKLPGGH 251 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKK +M+ IKEKLPG H Sbjct: 171 EKKSLMENIKEKLPGGH 187 Score = 29.6 bits (65), Expect = 3.2 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = -3 Query: 338 KKGIMDKIKEKLPGQH 291 KKG+M+ IK+KLPG H Sbjct: 300 KKGVMENIKDKLPGGH 315 Score = 29.3 bits (64), Expect = 4.1 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKK +M+ IK+KLPG H Sbjct: 363 EKKAVMENIKDKLPGGH 379
>DHB_CRAPL (P22239) Desiccation-related protein clone PCC6-19 (CDET6-19)| Length = 155 Score = 34.7 bits (78), Expect = 0.098 Identities = 17/18 (94%), Positives = 17/18 (94%), Gaps = 1/18 (5%) Frame = -3 Query: 341 EKKGIMDKIKEKLP-GQH 291 EKKGIMDKIKEKLP GQH Sbjct: 138 EKKGIMDKIKEKLPGGQH 155 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -3 Query: 338 KKGIMDKIKEKLPGQH 291 KKG+ DK+KEKLPG H Sbjct: 101 KKGMKDKMKEKLPGGH 116
>DHLE_RAPSA (P21298) Late embryogenesis abundant protein (Protein LEA)| Length = 184 Score = 34.7 bits (78), Expect = 0.098 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGI++KIKEKLPG H Sbjct: 164 EKKGILEKIKEKLPGHH 180
>DHN2_HORVU (P12952) Dehydrin DHN2 (B9)| Length = 143 Score = 34.3 bits (77), Expect = 0.13 Identities = 16/18 (88%), Positives = 17/18 (94%), Gaps = 1/18 (5%) Frame = -3 Query: 341 EKKGIMDKIKEKLP-GQH 291 EKKG+MDKIKEKLP GQH Sbjct: 126 EKKGVMDKIKEKLPGGQH 143
>DHN1_PEA (P28639) Dehydrin DHN1| Length = 197 Score = 34.3 bits (77), Expect = 0.13 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 EKKGIMDKIKEKLPG Sbjct: 176 EKKGIMDKIKEKLPG 190 Score = 32.0 bits (71), Expect = 0.64 Identities = 12/15 (80%), Positives = 15/15 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 +KKG+MDKIKEK+PG Sbjct: 119 DKKGVMDKIKEKIPG 133
>COR47_ARATH (P31168) Dehydrin COR47 (Cold-induced COR47 protein)| Length = 265 Score = 34.3 bits (77), Expect = 0.13 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGI++KIKEKLPG H Sbjct: 233 EKKGILEKIKEKLPGYH 249 Score = 33.5 bits (75), Expect = 0.22 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+++KIKEKLPG H Sbjct: 182 EKKGLVEKIKEKLPGHH 198 Score = 32.3 bits (72), Expect = 0.49 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 +KKG+++KIKEKLPG H Sbjct: 135 DKKGLVEKIKEKLPGHH 151
>DHN2_PEA (P28640) Dehydrin DHN2| Length = 232 Score = 34.3 bits (77), Expect = 0.13 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 EKKGIMDKIKEKLPG Sbjct: 211 EKKGIMDKIKEKLPG 225 Score = 32.0 bits (71), Expect = 0.64 Identities = 12/15 (80%), Positives = 15/15 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 +KKG+MDKIKEK+PG Sbjct: 118 DKKGVMDKIKEKIPG 132
>ERD14_ARATH (P42763) Dehydrin ERD14| Length = 185 Score = 34.3 bits (77), Expect = 0.13 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGI++KIKEKLPG H Sbjct: 156 EKKGILEKIKEKLPGYH 172 Score = 31.6 bits (70), Expect = 0.83 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQHXXXXXXXXXXXXLSVEVPVDHRCRINNK 207 EKKG M+K+KEKLPG + V PV+ + K Sbjct: 114 EKKGFMEKLKEKLPGHKKPEDGSAVAAAPVVVPPPVEEAHPVEKK 158
>DHN1_HORVU (P12951) Dehydrin DHN1 (B8)| Length = 139 Score = 34.3 bits (77), Expect = 0.13 Identities = 16/18 (88%), Positives = 17/18 (94%), Gaps = 1/18 (5%) Frame = -3 Query: 341 EKKGIMDKIKEKLP-GQH 291 EKKG+MDKIKEKLP GQH Sbjct: 122 EKKGVMDKIKEKLPGGQH 139
>TAS14_LYCES (P22240) Abscisic acid and environmental stress-inducible protein| TAS14 (Dehydrin TAS14) Length = 130 Score = 34.3 bits (77), Expect = 0.13 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+MDKIK+K+PG H Sbjct: 114 EKKGMMDKIKDKIPGMH 130 Score = 29.6 bits (65), Expect = 3.2 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = -3 Query: 338 KKGIMDKIKEKLPGQH 291 KKG+ +KI EK+PGQH Sbjct: 88 KKGLKEKIMEKMPGQH 103
>XERO1_ARATH (P25863) Dehydrin Xero 1| Length = 128 Score = 33.9 bits (76), Expect = 0.17 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+M+KIKEKLPG H Sbjct: 111 EKKGMMEKIKEKLPGGH 127 Score = 32.0 bits (71), Expect = 0.64 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 +KKGI +KIKEKLPG H Sbjct: 72 KKKGITEKIKEKLPGHH 88
>DHLEA_ARATH (Q96261) Probable dehydrin LEA| Length = 185 Score = 33.5 bits (75), Expect = 0.22 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGI++KIK+KLPG H Sbjct: 164 EKKGILEKIKDKLPGHH 180
>DHR18_ARATH (P30185) Dehydrin Rab18| Length = 186 Score = 33.1 bits (74), Expect = 0.29 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 EKKG+MDKIKEKLPG Sbjct: 169 EKKGMMDKIKEKLPG 183 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/16 (81%), Positives = 13/16 (81%) Frame = -3 Query: 338 KKGIMDKIKEKLPGQH 291 KKGI KIKEKLPG H Sbjct: 127 KKGITQKIKEKLPGHH 142
>DHN3_PEA (P28641) Dehydrin DHN3| Length = 232 Score = 32.7 bits (73), Expect = 0.37 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 EKKGIM+KIKEKLPG Sbjct: 211 EKKGIMEKIKEKLPG 225 Score = 32.0 bits (71), Expect = 0.64 Identities = 12/15 (80%), Positives = 15/15 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 +KKG+MDKIKEK+PG Sbjct: 144 DKKGVMDKIKEKIPG 158
>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 32.3 bits (72), Expect = 0.49 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG ++KIKEKLPG H Sbjct: 175 EKKGFLEKIKEKLPGGH 191 Score = 28.9 bits (63), Expect = 5.4 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG++ KI +KLPG H Sbjct: 227 EKKGLLGKIMDKLPGYH 243
>XERO2_ARATH (P42758) Dehydrin Xero 2 (Low-temperature-induced protein LTI30)| Length = 193 Score = 32.0 bits (71), Expect = 0.64 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKGI +KIKE+LPG H Sbjct: 140 EKKGIAEKIKEQLPGHH 156 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/17 (76%), Positives = 13/17 (76%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 E K MDKIKEKLPG H Sbjct: 176 ENKSTMDKIKEKLPGGH 192 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 +KKGI +KI EKLPG H Sbjct: 11 QKKGITEKIMEKLPGHH 27 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKK + +K+ EKLPG H Sbjct: 103 EKKSVTEKVMEKLPGHH 119 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+ +K+ E+LPG H Sbjct: 65 EKKGMTEKVMEQLPGHH 81 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKKG+ +K+ E+LPG H Sbjct: 38 EKKGMTEKVMEQLPGHH 54
>ECP40_DAUCA (Q07322) Embryogenic cell protein 40 (ECP40)| Length = 306 Score = 31.6 bits (70), Expect = 0.83 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 EKK ++DKIK+KLPG H Sbjct: 285 EKKSMLDKIKDKLPGHH 301
>ECP44_DAUCA (Q9XJ56) Phosphoprotein ECPP44| Length = 258 Score = 31.6 bits (70), Expect = 0.83 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = -3 Query: 338 KKGIMDKIKEKLPGQH 291 KKGI++KIKEK+PG H Sbjct: 182 KKGILEKIKEKIPGYH 197 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 +KKG M+KIKEKLPG Sbjct: 137 KKKGFMEKIKEKLPG 151
>DHR25_ORYSA (P30287) Dehydrin Rab25 (Drought-resistant protein 1) (rDRP1)| Length = 228 Score = 31.2 bits (69), Expect = 1.1 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = -3 Query: 341 EKKGIMDKIKEKLPG 297 EKKGI++KIKEKLPG Sbjct: 210 EKKGIVEKIKEKLPG 224 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -3 Query: 341 EKKGIMDKIKEKLPGQH 291 +KK I +KIKEKLPG H Sbjct: 164 KKKSIKEKIKEKLPGSH 180 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,507,714 Number of Sequences: 219361 Number of extensions: 848513 Number of successful extensions: 1840 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 1774 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1840 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
