ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK107794.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
2gb|AY108649.1| Zea mays PCO103051 mRNA sequence 78 3e-11
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
4dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
5gb|AC027216.6| Homo sapiens chromosome 18, clone RP11-440L16, co... 44 0.47
6gb|AC147502.2| Mus musculus BAC clone RP23-111N9 from chromosome... 42 1.8
7gb|AY618418.1| Maize mosaic virus, complete genome 42 1.8
8gb|AC124438.4| Mus musculus BAC clone RP24-260K9 from chromosome... 42 1.8
9gb|DQ366729.1| Uncultured Prochlorococcus marinus clone HF10-88H... 42 1.8
10emb|AL365203.19| Human DNA sequence from clone RP11-479G22 on ch... 42 1.8
11gb|AC010296.6| Homo sapiens chromosome 5 clone CTB-155H23, compl... 42 1.8
12gb|AC046175.6| Homo sapiens chromosome 8, clone RP11-577O23, com... 42 1.8
13gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence 42 1.8
14gb|AC015866.7|AC015866 Homo sapiens, clone RP11-59A1, complete s... 42 1.8
15gb|AC008431.5|AC008431 Homo sapiens chromosome 5 clone CTC-311C2... 42 1.8
16gb|AC018752.4|AC018752 Homo sapiens chromosome 5 clone CTC-339F2... 42 1.8
17gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence 42 1.8
18gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complet... 42 1.8
19dbj|AP005328.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.8
20dbj|AP005211.2| Homo sapiens genomic DNA, chromosome 18, clone:R... 42 1.8
21gb|AC104631.2| Drosophila melanogaster clone BACR35D19, complete... 40 7.3
22gb|AC124721.4| Mus musculus chromosome 10 clone RP23-387G19, com... 40 7.3
23gb|AC132342.3| Mus musculus BAC clone RP24-168N15 from chromosom... 40 7.3
24emb|BX950193.6| Zebrafish DNA sequence from clone CH211-183A18 i... 40 7.3
25gb|AC159297.3| Mus musculus BAC clone RP23-258F9 from chromosome... 40 7.3
26dbj|AK078788.1| Mus musculus 15 days embryo male testis cDNA, RI... 40 7.3
27emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in ... 40 7.3
28dbj|AB193500.1| Chionoecetes opilio genes for ITS1, 5.8S rRNA, I... 40 7.3
29gb|AE003569.4| Drosophila melanogaster chromosome X, section 70 ... 40 7.3
30gb|AC132383.5| Mus musculus BAC clone RP23-434M19 from 10, compl... 40 7.3

>dbj|AK107794.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D08, full
           insert sequence
          Length = 743

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 123/148 (83%)
 Strand = Plus / Minus

                                                                       
Query: 390 tttcttctgaatcatttccgcttagcactctcttccgctctagtaaatgcatcagtgagc 449
           |||||||||||||||||   ||||||||| ||||| ||| ||||||| |||||  ||| |
Sbjct: 613 tttcttctgaatcattttttcttagcactttcttctgctatagtaaaagcatccatgatc 554

                                                                       
Query: 450 acatcaacggcccaatccttggcatcctccagccgcacgttttctccagttcttaagcgg 509
           | |||    |||||||||||| ||||||||||||| ||   ||| ||||||||||  |||
Sbjct: 553 atatcggtagcccaatccttgacatcctccagccgtactggttccccagttcttatacgg 494

                                       
Query: 510 gcatgtggacgagctaactttgattcaa 537
           ||||| |||||||||||||| |||||||
Sbjct: 493 gcatgcggacgagctaacttcgattcaa 466



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>gb|AY108649.1| Zea mays PCO103051 mRNA sequence
          Length = 919

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                       
Query: 459 gcccaatccttggcatcctccagccgcacgttttctccagttcttaagcgggcatgtgga 518
           |||||||||||| |||||||||| |||||    || || |||||||  ||||||||||||
Sbjct: 572 gcccaatccttgacatcctccagtcgcactggctcccccgttcttatccgggcatgtgga 513

                              
Query: 519 cgagctaactttgattcaa 537
           |||||||||||||||||||
Sbjct: 512 cgagctaactttgattcaa 494



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                            
Query: 390      tttcttctgaatcatttccgcttagcactctcttccgctctagtaaatgcatcagtgagc 449
                |||||||||||||||||   ||||||||| ||||| ||||||||||| |||||  ||| |
Sbjct: 18276786 tttcttctgaatcattttttcttagcactttcttctgctctagtaaaagcatccatgatc 18276845

                                              
Query: 450      acatcaacggcccaatccttggcatcctcc 479
                | |||    |||||||||||| ||||||||
Sbjct: 18276846 atatcggtagcccaatccttgacatcctcc 18276875



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 495      ccagttcttaagcgggcatgtggacgagctaactttgattcaa 537
                ||||||||||  |||||||| |||||||||||||| |||||||
Sbjct: 18277230 ccagttcttatacgggcatgcggacgagctaacttcgattcaa 18277272



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>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0556A05
          Length = 158189

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                          
Query: 390    tttcttctgaatcatttccgcttagcactctcttccgctctagtaaatgcatcagtgagc 449
              |||||||||||||||||   ||||||||| ||||| ||||||||||| |||||  ||| |
Sbjct: 125510 tttcttctgaatcattttttcttagcactttcttctgctctagtaaaagcatccatgatc 125569

                                            
Query: 450    acatcaacggcccaatccttggcatcctcc 479
              | |||    |||||||||||| ||||||||
Sbjct: 125570 atatcggtagcccaatccttgacatcctcc 125599



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 495    ccagttcttaagcgggcatgtggacgagctaactttgattcaa 537
              ||||||||||  |||||||| |||||||||||||| |||||||
Sbjct: 125954 ccagttcttatacgggcatgcggacgagctaacttcgattcaa 125996



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>gb|AC027216.6| Homo sapiens chromosome 18, clone RP11-440L16, complete sequence
          Length = 170843

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 239   caaggaaaacatatattctaag 260
             ||||||||||||||||||||||
Sbjct: 53528 caaggaaaacatatattctaag 53549



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>gb|AC147502.2| Mus musculus BAC clone RP23-111N9 from chromosome 7, complete sequence
          Length = 202934

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 350    aaccccacagtgtttcctctaaaca 374
              ||||||||||||||||| |||||||
Sbjct: 129087 aaccccacagtgtttccactaaaca 129063



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>gb|AY618418.1| Maize mosaic virus, complete genome
          Length = 12133

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 374  aaaacttcgaagtgcctttct 394
            |||||||||||||||||||||
Sbjct: 7593 aaaacttcgaagtgcctttct 7613



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>gb|AC124438.4| Mus musculus BAC clone RP24-260K9 from chromosome 7, complete
            sequence
          Length = 183326

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 350  aaccccacagtgtttcctctaaaca 374
            ||||||||||||||||| |||||||
Sbjct: 5396 aaccccacagtgtttccactaaaca 5372



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>gb|DQ366729.1| Uncultured Prochlorococcus marinus clone HF10-88H9 genomic sequence
          Length = 34302

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 235  gcagcaaggaaaacatatatt 255
            |||||||||||||||||||||
Sbjct: 6620 gcagcaaggaaaacatatatt 6640



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>emb|AL365203.19| Human DNA sequence from clone RP11-479G22 on chromosome 10 Contains the
              3' end of a novel gene (FLJ13031) (FLJ40349), the ITGB1
              gene for integrin beta 1 (fibronectin receptor beta
              polypeptide antigen CD29 includes MDF2 MSK12), an adenylate
              kinase 3 like 1 (AK3L1) pseudogene, a novel gene, the 5'
              end of a novel gene, a NADH dehydrogenase subunit 4L (ND4L)
              pseudogene, a pseudogene similar to part of integrin beta 2
              (antigen CD18 (p95) lymphocyte function-associated antigen
              1; macrophage antigen 1 (mac-1) beta subunit) (ITGB2) and a
              CpG island, complete sequence
          Length = 197973

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 303    tcaggaactcaaacttcaaaa 323
              |||||||||||||||||||||
Sbjct: 132290 tcaggaactcaaacttcaaaa 132310



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>gb|AC010296.6| Homo sapiens chromosome 5 clone CTB-155H23, complete sequence
          Length = 134349

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 36    cccagacctgtcactcaaggcatga 60
             |||||||||||||||||||| ||||
Sbjct: 27133 cccagacctgtcactcaaggaatga 27109



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>gb|AC046175.6| Homo sapiens chromosome 8, clone RP11-577O23, complete sequence
          Length = 194972

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 437    tgcatcagtgagcacatcaac 457
              |||||||||||||||||||||
Sbjct: 150769 tgcatcagtgagcacatcaac 150789



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>gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence
          Length = 174049

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 437    tgcatcagtgagcacatcaac 457
              |||||||||||||||||||||
Sbjct: 103727 tgcatcagtgagcacatcaac 103747



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>gb|AC015866.7|AC015866 Homo sapiens, clone RP11-59A1, complete sequence
          Length = 150564

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 437   tgcatcagtgagcacatcaac 457
             |||||||||||||||||||||
Sbjct: 64749 tgcatcagtgagcacatcaac 64769



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>gb|AC008431.5|AC008431 Homo sapiens chromosome 5 clone CTC-311C22, complete sequence
          Length = 118947

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 36    cccagacctgtcactcaaggcatga 60
             |||||||||||||||||||| ||||
Sbjct: 40916 cccagacctgtcactcaaggaatga 40940



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>gb|AC018752.4|AC018752 Homo sapiens chromosome 5 clone CTC-339F2, complete sequence
          Length = 206691

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 36    cccagacctgtcactcaaggcatga 60
             |||||||||||||||||||| ||||
Sbjct: 40914 cccagacctgtcactcaaggaatga 40938



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>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence
          Length = 203581

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 180    tgacagggagaaggttctgta 200
              |||||||||||||||||||||
Sbjct: 188020 tgacagggagaaggttctgta 188000



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>gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complete sequence
          Length = 205543

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 350    aaccccacagtgtttcctctaaaca 374
              ||||||||||||||||| |||||||
Sbjct: 189542 aaccccacagtgtttccactaaaca 189518



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>dbj|AP005328.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-689C9, complete
              sequences
          Length = 170427

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 357    cagtgtttcctctaaacaaaa 377
              |||||||||||||||||||||
Sbjct: 130256 cagtgtttcctctaaacaaaa 130236



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>dbj|AP005211.2| Homo sapiens genomic DNA, chromosome 18, clone:RP11-267C19, complete
             sequence
          Length = 156794

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 357   cagtgtttcctctaaacaaaa 377
             |||||||||||||||||||||
Sbjct: 78433 cagtgtttcctctaaacaaaa 78413



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>gb|AC104631.2| Drosophila melanogaster clone BACR35D19, complete sequence
          Length = 166908

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   agtgtttcctctaaacaaaa 377
             ||||||||||||||||||||
Sbjct: 61598 agtgtttcctctaaacaaaa 61579



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>gb|AC124721.4| Mus musculus chromosome 10 clone RP23-387G19, complete sequence
          Length = 216612

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 289   gcatttaccaggagtcaggaactc 312
             |||||||||||||| |||||||||
Sbjct: 94422 gcatttaccaggagccaggaactc 94445



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>gb|AC132342.3| Mus musculus BAC clone RP24-168N15 from chromosome 12, complete
             sequence
          Length = 165700

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   caacttcaggtcatcgaatt 180
             ||||||||||||||||||||
Sbjct: 73792 caacttcaggtcatcgaatt 73811



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>emb|BX950193.6| Zebrafish DNA sequence from clone CH211-183A18 in linkage group 5,
             complete sequence
          Length = 15876

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    aacagtacctcaaattacta 34
             ||||||||||||||||||||
Sbjct: 11574 aacagtacctcaaattacta 11593



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>gb|AC159297.3| Mus musculus BAC clone RP23-258F9 from chromosome 12, complete
           sequence
          Length = 193434

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 caacttcaggtcatcgaatt 180
           ||||||||||||||||||||
Sbjct: 524 caacttcaggtcatcgaatt 505



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>dbj|AK078788.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:8030489B13
            product:fucosyltransferase 8, full insert sequence
          Length = 1250

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  caacttcaggtcatcgaatt 180
            ||||||||||||||||||||
Sbjct: 1236 caacttcaggtcatcgaatt 1217



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>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5,
             complete sequence
          Length = 197352

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    aacagtacctcaaattacta 34
             ||||||||||||||||||||
Sbjct: 51524 aacagtacctcaaattacta 51505



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>dbj|AB193500.1| Chionoecetes opilio genes for ITS1, 5.8S rRNA, ITS2, haplotype:CO2
          Length = 1592

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 1   cttttttaaaccataacagtacct 24
           |||||||||||||||||| |||||
Sbjct: 757 cttttttaaaccataacactacct 780



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>gb|AE003569.4| Drosophila melanogaster chromosome X, section 70 of 74 of the complete
              sequence
          Length = 283558

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    agtgtttcctctaaacaaaa 377
              ||||||||||||||||||||
Sbjct: 157830 agtgtttcctctaaacaaaa 157811



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>gb|AC132383.5| Mus musculus BAC clone RP23-434M19 from 10, complete sequence
          Length = 212242

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 228   atttattgcagcaaggaaaacata 251
             ||||| ||||||||||||||||||
Sbjct: 88288 atttactgcagcaaggaaaacata 88265


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,605,493
Number of Sequences: 3902068
Number of extensions: 4605493
Number of successful extensions: 84835
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84765
Number of HSP's gapped (non-prelim): 69
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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