Clone Name | rbart18a11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK107794.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D08, full insert sequence Length = 743 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Minus Query: 390 tttcttctgaatcatttccgcttagcactctcttccgctctagtaaatgcatcagtgagc 449 ||||||||||||||||| ||||||||| ||||| ||| ||||||| ||||| ||| | Sbjct: 613 tttcttctgaatcattttttcttagcactttcttctgctatagtaaaagcatccatgatc 554 Query: 450 acatcaacggcccaatccttggcatcctccagccgcacgttttctccagttcttaagcgg 509 | ||| |||||||||||| ||||||||||||| || ||| |||||||||| ||| Sbjct: 553 atatcggtagcccaatccttgacatcctccagccgtactggttccccagttcttatacgg 494 Query: 510 gcatgtggacgagctaactttgattcaa 537 ||||| |||||||||||||| ||||||| Sbjct: 493 gcatgcggacgagctaacttcgattcaa 466
>gb|AY108649.1| Zea mays PCO103051 mRNA sequence Length = 919 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 459 gcccaatccttggcatcctccagccgcacgttttctccagttcttaagcgggcatgtgga 518 |||||||||||| |||||||||| ||||| || || ||||||| |||||||||||| Sbjct: 572 gcccaatccttgacatcctccagtcgcactggctcccccgttcttatccgggcatgtgga 513 Query: 519 cgagctaactttgattcaa 537 ||||||||||||||||||| Sbjct: 512 cgagctaactttgattcaa 494
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 60.0 bits (30), Expect = 8e-06 Identities = 75/90 (83%) Strand = Plus / Plus Query: 390 tttcttctgaatcatttccgcttagcactctcttccgctctagtaaatgcatcagtgagc 449 ||||||||||||||||| ||||||||| ||||| ||||||||||| ||||| ||| | Sbjct: 18276786 tttcttctgaatcattttttcttagcactttcttctgctctagtaaaagcatccatgatc 18276845 Query: 450 acatcaacggcccaatccttggcatcctcc 479 | ||| |||||||||||| |||||||| Sbjct: 18276846 atatcggtagcccaatccttgacatcctcc 18276875 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 495 ccagttcttaagcgggcatgtggacgagctaactttgattcaa 537 |||||||||| |||||||| |||||||||||||| ||||||| Sbjct: 18277230 ccagttcttatacgggcatgcggacgagctaacttcgattcaa 18277272
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 60.0 bits (30), Expect = 8e-06 Identities = 75/90 (83%) Strand = Plus / Plus Query: 390 tttcttctgaatcatttccgcttagcactctcttccgctctagtaaatgcatcagtgagc 449 ||||||||||||||||| ||||||||| ||||| ||||||||||| ||||| ||| | Sbjct: 125510 tttcttctgaatcattttttcttagcactttcttctgctctagtaaaagcatccatgatc 125569 Query: 450 acatcaacggcccaatccttggcatcctcc 479 | ||| |||||||||||| |||||||| Sbjct: 125570 atatcggtagcccaatccttgacatcctcc 125599 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 495 ccagttcttaagcgggcatgtggacgagctaactttgattcaa 537 |||||||||| |||||||| |||||||||||||| ||||||| Sbjct: 125954 ccagttcttatacgggcatgcggacgagctaacttcgattcaa 125996
>gb|AC027216.6| Homo sapiens chromosome 18, clone RP11-440L16, complete sequence Length = 170843 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 239 caaggaaaacatatattctaag 260 |||||||||||||||||||||| Sbjct: 53528 caaggaaaacatatattctaag 53549
>gb|AC147502.2| Mus musculus BAC clone RP23-111N9 from chromosome 7, complete sequence Length = 202934 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 350 aaccccacagtgtttcctctaaaca 374 ||||||||||||||||| ||||||| Sbjct: 129087 aaccccacagtgtttccactaaaca 129063
>gb|AY618418.1| Maize mosaic virus, complete genome Length = 12133 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 aaaacttcgaagtgcctttct 394 ||||||||||||||||||||| Sbjct: 7593 aaaacttcgaagtgcctttct 7613
>gb|AC124438.4| Mus musculus BAC clone RP24-260K9 from chromosome 7, complete sequence Length = 183326 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 350 aaccccacagtgtttcctctaaaca 374 ||||||||||||||||| ||||||| Sbjct: 5396 aaccccacagtgtttccactaaaca 5372
>gb|DQ366729.1| Uncultured Prochlorococcus marinus clone HF10-88H9 genomic sequence Length = 34302 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gcagcaaggaaaacatatatt 255 ||||||||||||||||||||| Sbjct: 6620 gcagcaaggaaaacatatatt 6640
>emb|AL365203.19| Human DNA sequence from clone RP11-479G22 on chromosome 10 Contains the 3' end of a novel gene (FLJ13031) (FLJ40349), the ITGB1 gene for integrin beta 1 (fibronectin receptor beta polypeptide antigen CD29 includes MDF2 MSK12), an adenylate kinase 3 like 1 (AK3L1) pseudogene, a novel gene, the 5' end of a novel gene, a NADH dehydrogenase subunit 4L (ND4L) pseudogene, a pseudogene similar to part of integrin beta 2 (antigen CD18 (p95) lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit) (ITGB2) and a CpG island, complete sequence Length = 197973 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 tcaggaactcaaacttcaaaa 323 ||||||||||||||||||||| Sbjct: 132290 tcaggaactcaaacttcaaaa 132310
>gb|AC010296.6| Homo sapiens chromosome 5 clone CTB-155H23, complete sequence Length = 134349 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 36 cccagacctgtcactcaaggcatga 60 |||||||||||||||||||| |||| Sbjct: 27133 cccagacctgtcactcaaggaatga 27109
>gb|AC046175.6| Homo sapiens chromosome 8, clone RP11-577O23, complete sequence Length = 194972 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgcatcagtgagcacatcaac 457 ||||||||||||||||||||| Sbjct: 150769 tgcatcagtgagcacatcaac 150789
>gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence Length = 174049 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgcatcagtgagcacatcaac 457 ||||||||||||||||||||| Sbjct: 103727 tgcatcagtgagcacatcaac 103747
>gb|AC015866.7|AC015866 Homo sapiens, clone RP11-59A1, complete sequence Length = 150564 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgcatcagtgagcacatcaac 457 ||||||||||||||||||||| Sbjct: 64749 tgcatcagtgagcacatcaac 64769
>gb|AC008431.5|AC008431 Homo sapiens chromosome 5 clone CTC-311C22, complete sequence Length = 118947 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 36 cccagacctgtcactcaaggcatga 60 |||||||||||||||||||| |||| Sbjct: 40916 cccagacctgtcactcaaggaatga 40940
>gb|AC018752.4|AC018752 Homo sapiens chromosome 5 clone CTC-339F2, complete sequence Length = 206691 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 36 cccagacctgtcactcaaggcatga 60 |||||||||||||||||||| |||| Sbjct: 40914 cccagacctgtcactcaaggaatga 40938
>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence Length = 203581 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 tgacagggagaaggttctgta 200 ||||||||||||||||||||| Sbjct: 188020 tgacagggagaaggttctgta 188000
>gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complete sequence Length = 205543 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 350 aaccccacagtgtttcctctaaaca 374 ||||||||||||||||| ||||||| Sbjct: 189542 aaccccacagtgtttccactaaaca 189518
>dbj|AP005328.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-689C9, complete sequences Length = 170427 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 cagtgtttcctctaaacaaaa 377 ||||||||||||||||||||| Sbjct: 130256 cagtgtttcctctaaacaaaa 130236
>dbj|AP005211.2| Homo sapiens genomic DNA, chromosome 18, clone:RP11-267C19, complete sequence Length = 156794 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 cagtgtttcctctaaacaaaa 377 ||||||||||||||||||||| Sbjct: 78433 cagtgtttcctctaaacaaaa 78413
>gb|AC104631.2| Drosophila melanogaster clone BACR35D19, complete sequence Length = 166908 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 agtgtttcctctaaacaaaa 377 |||||||||||||||||||| Sbjct: 61598 agtgtttcctctaaacaaaa 61579
>gb|AC124721.4| Mus musculus chromosome 10 clone RP23-387G19, complete sequence Length = 216612 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 gcatttaccaggagtcaggaactc 312 |||||||||||||| ||||||||| Sbjct: 94422 gcatttaccaggagccaggaactc 94445
>gb|AC132342.3| Mus musculus BAC clone RP24-168N15 from chromosome 12, complete sequence Length = 165700 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caacttcaggtcatcgaatt 180 |||||||||||||||||||| Sbjct: 73792 caacttcaggtcatcgaatt 73811
>emb|BX950193.6| Zebrafish DNA sequence from clone CH211-183A18 in linkage group 5, complete sequence Length = 15876 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aacagtacctcaaattacta 34 |||||||||||||||||||| Sbjct: 11574 aacagtacctcaaattacta 11593
>gb|AC159297.3| Mus musculus BAC clone RP23-258F9 from chromosome 12, complete sequence Length = 193434 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caacttcaggtcatcgaatt 180 |||||||||||||||||||| Sbjct: 524 caacttcaggtcatcgaatt 505
>dbj|AK078788.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030489B13 product:fucosyltransferase 8, full insert sequence Length = 1250 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caacttcaggtcatcgaatt 180 |||||||||||||||||||| Sbjct: 1236 caacttcaggtcatcgaatt 1217
>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5, complete sequence Length = 197352 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aacagtacctcaaattacta 34 |||||||||||||||||||| Sbjct: 51524 aacagtacctcaaattacta 51505
>dbj|AB193500.1| Chionoecetes opilio genes for ITS1, 5.8S rRNA, ITS2, haplotype:CO2 Length = 1592 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 cttttttaaaccataacagtacct 24 |||||||||||||||||| ||||| Sbjct: 757 cttttttaaaccataacactacct 780
>gb|AE003569.4| Drosophila melanogaster chromosome X, section 70 of 74 of the complete sequence Length = 283558 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 agtgtttcctctaaacaaaa 377 |||||||||||||||||||| Sbjct: 157830 agtgtttcctctaaacaaaa 157811
>gb|AC132383.5| Mus musculus BAC clone RP23-434M19 from 10, complete sequence Length = 212242 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 atttattgcagcaaggaaaacata 251 ||||| |||||||||||||||||| Sbjct: 88288 atttactgcagcaaggaaaacata 88265 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,605,493 Number of Sequences: 3902068 Number of extensions: 4605493 Number of successful extensions: 84835 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84765 Number of HSP's gapped (non-prelim): 69 length of query: 537 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 514 effective length of database: 17,143,297,704 effective search space: 8811655019856 effective search space used: 8811655019856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)