ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 51 1e-06
2PIP1_ATRCA (P42767) Aquaporin PIP-type 51 1e-06
3PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ... 49 5e-06
4PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 49 5e-06
5PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 44 2e-04
6PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 43 3e-04
7PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 40 0.002
8PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane ... 39 0.007
9PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic... 37 0.025
10PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic... 37 0.025
11PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic... 37 0.025
12PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane ... 36 0.043
13PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane ... 36 0.043
14PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane ... 35 0.095
15PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic... 32 0.62
16PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane ... 32 0.62
17PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic... 32 0.80
18PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic... 32 1.0
19SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4 31 1.8
20SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4 31 1.8
21PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane ... 31 1.8
22PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane ... 31 1.8
23PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane ... 31 1.8
24PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic... 31 1.8
25PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-respons... 31 1.8
26SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4 30 2.3
27UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-reco... 30 4.0
28SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4 28 8.9
29TELT_MOUSE (O70548) Telethonin (Titin cap protein) 28 8.9

>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           PF+GALAAAAYHQYILRAAAIKALG
Sbjct: 250 PFIGALAAAAYHQYILRAAAIKALG 274



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>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           PFVGALAAAAYHQY+LRAAAIKALG
Sbjct: 250 PFVGALAAAAYHQYVLRAAAIKALG 274



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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKAL 396
           PFVGALAAAAYHQYILRAAAIKAL
Sbjct: 246 PFVGALAAAAYHQYILRAAAIKAL 269



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           PF+GALAAAAYHQYILRA+AIKALG
Sbjct: 248 PFLGALAAAAYHQYILRASAIKALG 272



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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/25 (84%), Positives = 21/25 (84%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           PFVGA  AA YHQYILRA AIKALG
Sbjct: 260 PFVGAAIAAFYHQYILRAGAIKALG 284



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           P +GA AAA YHQ+ILRAAAIKALG
Sbjct: 255 PMIGAAAAAFYHQFILRAAAIKALG 279



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           PF GA  AA YHQ++LRA AIKALG
Sbjct: 254 PFAGAAIAAFYHQFVLRAGAIKALG 278



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>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2e) (PIP2e)
          Length = 289

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           PFVGA  AA YHQ++LRA A+KA G
Sbjct: 254 PFVGAAIAAFYHQFVLRAGAMKAYG 278



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>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)|
           (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced
           tonoplast intrinsic protein) (WSI-TIP)
          Length = 285

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           PF+GA  AA YHQ++LRA+  K+LG
Sbjct: 253 PFIGATIAAFYHQFVLRASGSKSLG 277



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>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)|
           (PIP2b) (TMP2b)
          Length = 285

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           PF+GA  AA YHQ++LRA+  K+LG
Sbjct: 253 PFIGAAIAAFYHQFVLRASGSKSLG 277



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>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)|
           (PIP2a)
          Length = 287

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKALG 393
           PF+GA  AA YHQ++LRA+  K+LG
Sbjct: 255 PFIGAAIAAFYHQFVLRASGSKSLG 279



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>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic|
           protein 2.2) (OsPIP2.2)
          Length = 288

 Score = 36.2 bits (82), Expect = 0.043
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIK 402
           P +GA  AAAYHQY+LRA+A K
Sbjct: 259 PLIGAAIAAAYHQYVLRASAAK 280



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>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic|
           protein 2.3) (OsPIP2.3)
          Length = 290

 Score = 36.2 bits (82), Expect = 0.043
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIK 402
           P +GA  AAAYHQY+LRA+A K
Sbjct: 260 PLIGAAIAAAYHQYVLRASAAK 281



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>PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 2.8) (OsPIP2.8)
          Length = 280

 Score = 35.0 bits (79), Expect = 0.095
 Identities = 16/23 (69%), Positives = 16/23 (69%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKA 399
           PF GA AA  YH YILR AA KA
Sbjct: 247 PFAGAAAAMIYHHYILRGAAAKA 269



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>PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4)|
           (OsPIP2.4)
          Length = 286

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAA 408
           PF+GA  AA YHQ ILRA+A
Sbjct: 257 PFIGAAIAALYHQVILRASA 276



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>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic|
           protein 2.7) (OsPIP2.7)
          Length = 290

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKAL 396
           P +GA  AAAYH+ +LR  A KAL
Sbjct: 257 PVIGAFLAAAYHKLVLRGEAAKAL 280



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>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)|
           (OsPIP2.5)
          Length = 283

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAA 408
           PF+GA  AA YHQ +LRA+A
Sbjct: 254 PFIGAAIAALYHQIVLRASA 273



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>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1)
          Length = 289

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKA 399
           PFVGA  AA YHQ I+RA   K+
Sbjct: 265 PFVGAALAAIYHQVIIRAIPFKS 287



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>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 329 YCHRCIKLLAGVLSCSGCS 385
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 329 YCHRCIKLLAGVLSCSGCS 385
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic|
           protein 1.2) (OsPIP1.2)
          Length = 282

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKA 399
           PF+GA  AA YHQ ++RA   K+
Sbjct: 258 PFIGAALAAIYHQVVIRAIPFKS 280



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>PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane intrinsic|
           protein 1d) (PIP1d)
          Length = 287

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKA 399
           PF+GA  AA YHQ ++RA   K+
Sbjct: 263 PFIGAALAALYHQIVIRAIPFKS 285



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>PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane intrinsic|
           protein 1.4) (Transmembrane protein C) (TMP-C)
          Length = 287

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKA 399
           PF+GA  AA YHQ ++RA   K+
Sbjct: 263 PFIGAALAALYHQIVIRAIPFKS 285



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>PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c)|
           (PIP1c) (Transmembrane protein B) (TMP-B)
          Length = 286

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKA 399
           PF+GA  AA YHQ ++RA   K+
Sbjct: 262 PFIGAALAALYHQLVIRAIPFKS 284



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>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein|
           7a) (Turgor-responsive protein 31)
          Length = 289

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 467 PFVGALAAAAYHQYILRAAAIKA 399
           PF+GA  AA YHQ ++RA   K+
Sbjct: 266 PFIGAALAALYHQVVIRAIPFKS 288



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>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4|
          Length = 742

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 329 YCHRCIKLLAGVLSCSGCS 385
           YCH C+K L   + C GCS
Sbjct: 294 YCHHCLKQLLASIPCCGCS 312



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>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 387  PEQPEQLSTPANNLMQRWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHP 241
            P +P+   TP + L+      S  P+ A  PH  T F   V L + A P
Sbjct: 1560 PPRPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGP 1608



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>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4|
          Length = 799

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 329 YCHRCIKLLAGVLSCSGCS 385
           YCHRC+K     + C  CS
Sbjct: 295 YCHRCLKHTLATVPCGSCS 313



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>TELT_MOUSE (O70548) Telethonin (Titin cap protein)|
          Length = 167

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 224 QTLNEAGWARWRSSTANTKPVRLCG*LAPDGHEEQYCHR 340
           Q   EA WA W+  T +T+P   C     D    +  HR
Sbjct: 15  QERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHR 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,741,291
Number of Sequences: 219361
Number of extensions: 1079071
Number of successful extensions: 2671
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2671
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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