Clone Name | rbart18a02 |
---|---|
Clone Library Name | barley_pub |
>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 699 Score = 32.0 bits (71), Expect = 0.94 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = -1 Query: 498 HEQDAEEEEDGHRQDKDEGLKMKLFRRFHHHHAHDSENEVD 376 HE+D ++++D D D+ + ++ + H H H E + D Sbjct: 243 HEEDDDDDDDDDDDDDDDDVSIEYRHQAHRHQGHGIEEDED 283
>AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)| (ATPase class I type 11C) (ATPase IG) (ATPase IQ) (ATPase class VI type 11C) Length = 1132 Score = 30.4 bits (67), Expect = 2.7 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = -3 Query: 124 YFFFLRIPRYITTWVYVLLCLFVSLFARV 38 YF F ++ ++TW+ ++L +F+SLF + Sbjct: 1057 YFVFAQMLSSVSTWLAIILLIFISLFPEI 1085
>VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprotein G2;| Nonstructural protein NS-M; Glycoprotein G1] Length = 1441 Score = 30.0 bits (66), Expect = 3.6 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 8/50 (16%) Frame = -3 Query: 130 ISYFFFLRIPRYITTWVYVLLCLFVSL--------FARVGRLYEQQCDVF 5 I++++F+ I Y TW +++ L + L F+ + +Y ++CD++ Sbjct: 354 INFYYFVCIMNYAVTWGLIIIGLLIGLLFKKYQHRFSNLYAMYCEECDMY 403
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = -1 Query: 498 HEQDAEEEEDGHRQDKDEGLKMKLFR-RFHHHHAHDSENEVDEVEE 364 H EEE+ D DEG + R + H H H E + D+ +E Sbjct: 254 HRHRGHEEEEDEEDDDDEGDSTESDRHQAHRHRGHREEEDEDDDDE 299
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 29.6 bits (65), Expect = 4.7 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = +3 Query: 390 HCHARGGGGNVGTASSSG 443 HCHA GGG N G A G Sbjct: 707 HCHATGGGANAGGAGGPG 724
>ECP44_DAUCA (Q9XJ56) Phosphoprotein ECPP44| Length = 258 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -1 Query: 489 DAEEEEDGHRQDKDE--GLKMKLFRRFHHHHAHDSENEVDEVEELARKLG 346 D E EE G ++ K E GLK K+ + HH D+ V+ V E +K G Sbjct: 92 DEEVEEGGEKKKKKEKKGLKEKIEEKIHHKE-EDTSVPVEVVTEPEKKKG 140
>AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 11C (EC 3.6.3.1)| (Fragment) Length = 347 Score = 29.6 bits (65), Expect = 4.7 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = -3 Query: 124 YFFFLRIPRYITTWVYVLLCLFVSLFARV 38 YF F ++ ++TW+ ++L +F+SLF + Sbjct: 285 YFVFAQMLCSVSTWLAIILLIFISLFPEI 313
>FKBP3_CANGA (Q6FKH7) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 437 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/44 (27%), Positives = 21/44 (47%) Frame = -1 Query: 483 EEEEDGHRQDKDEGLKMKLFRRFHHHHAHDSENEVDEVEELARK 352 EE E ++ +E K ++ HHH HD +++ D + K Sbjct: 240 EEIEASEEEESEEEEKKSKHKKHDHHHHHDHDHDHDHEHKSKNK 283 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,521,613 Number of Sequences: 219361 Number of extensions: 915795 Number of successful extensions: 3987 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3291 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3860 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)