ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482080.1| Oryza sativa (japonica cultivar-group), mRNA 103 5e-19
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
3dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
4dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
5dbj|AK120761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
6dbj|AK069663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
7dbj|AK101135.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
8ref|XM_225089.3| PREDICTED: Rattus norvegicus similar to Contact... 44 0.43
9emb|BX004984.6| Zebrafish DNA sequence from clone DKEY-3N4, comp... 44 0.43
10emb|AL953891.10| Zebrafish DNA sequence from clone DKEY-28P22, c... 44 0.43
11gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete se... 42 1.7
12emb|BX663614.24| Zebrafish DNA sequence from clone DKEY-148L2 in... 42 1.7
13emb|CR533579.6| Zebrafish DNA sequence from clone CH211-232J20 i... 42 1.7
14gb|AC111111.11| Mus musculus chromosome 3, clone RP23-201A9, com... 42 1.7
15gb|AC110040.8| Mus musculus chromosome 3, clone RP23-276J3, comp... 42 1.7
16gb|AC144766.18| Medicago truncatula clone mth2-17c2, complete se... 42 1.7
17emb|AL163284.2|HS21C084 Homo sapiens chromosome 21 segment HS21C084 42 1.7
18gb|AC149268.21| Medicago truncatula clone mth2-94j16, complete s... 42 1.7
19gb|AC135467.15| Medicago truncatula clone mth2-34h12, complete s... 42 1.7
20emb|AL512641.9| Human DNA sequence from clone RP11-139J15 on chr... 42 1.7
21gb|AC134043.1| Homo sapiens chromosome 5 clone RP11-175K6, compl... 42 1.7
22gb|AC063918.21| Homo sapiens 3 BAC RP11-49C18 (Roswell Park Canc... 42 1.7
23gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete se... 42 1.7
24gb|AC011376.5| Homo sapiens chromosome 5 clone CTB-11I22, comple... 42 1.7
25gb|AC138391.2| Homo sapiens chromosome 3 clone RP11-167C9, compl... 42 1.7
26dbj|BS000160.1| Pan troglodytes chromosome 22 clone:PTB-043M13, ... 42 1.7
27emb|BX950224.7| Zebrafish DNA sequence from clone DKEY-284G18 in... 42 1.7
28gb|AC104928.8| Mus musculus chromosome 8, clone RP24-111K8, comp... 42 1.7
29emb|AL773569.1|HS247E2 Homo sapiens chromosome 21 from PAC RP1-2... 42 1.7
30emb|AL671888.8| Mouse DNA sequence from clone RP23-247O14 on chr... 42 1.7
31gb|AF500195.1| Oryzias latipes choriogenin H gene, complete cds 42 1.7
32gb|AC186002.3| Pan troglodytes BAC clone CH251-86D23 from chromo... 40 6.7
33gb|AC132385.5| Mus musculus BAC clone RP23-438F21 from chromosom... 40 6.7
34emb|CT009691.8| Zebrafish DNA sequence from clone CH73-64E1 in l... 40 6.7
35gb|AC125122.4| Mus musculus BAC clone RP24-269O4 from chromosome... 40 6.7
36gb|AC125481.23| Medicago truncatula clone mth2-15n13, complete s... 40 6.7
37gb|AC146692.14| Medicago truncatula clone mth2-7n20, complete se... 40 6.7
38gb|AC123570.7| Medicago truncatula clone mth2-33l22, complete se... 40 6.7
39emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on ch... 40 6.7
40emb|AL360267.10| Human DNA sequence from clone RP11-342C20 on ch... 40 6.7
41emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chr... 40 6.7
42emb|AL513478.10| Human DNA sequence from clone RP11-327I22 on ch... 40 6.7
43gb|L19443.1| Human adenovirus F, complete genome 40 6.7
44emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on ch... 40 6.7
45gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Canc... 40 6.7
46emb|BX890572.9| Zebrafish DNA sequence from clone CH211-234F20 i... 40 6.7
47gb|AC183610.3| Pan troglodytes BAC clone CH251-223D9 from chromo... 40 6.7
48gb|AC099671.2| Homo sapiens chromosome 1 clone RP11-466L22, comp... 40 6.7
49gb|AC146862.24| Medicago truncatula clone mth2-174p12, complete ... 40 6.7
50emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chro... 40 6.7
51gb|AC152920.17| Medicago truncatula clone mth2-101o15, complete ... 40 6.7
52gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequ... 40 6.7
53gb|AC135461.11| Medicago truncatula clone mth2-34f24, complete s... 40 6.7
54gb|AC124968.36| Medicago truncatula clone mth2-15e21, complete s... 40 6.7
55gb|AC137701.25| Medicago truncatula clone mth2-35h1, complete se... 40 6.7
56gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complet... 40 6.7
57gb|AC098973.2| Homo sapiens chromosome 3 clone RP11-286D1, compl... 40 6.7
58emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chr... 40 6.7
59gb|AC010209.14| Homo sapiens 12 BAC RP11-427C3 (Roswell Park Can... 40 6.7
60gb|AF250284.1|AF250284 Amsacta moorei entomopoxvirus, complete g... 40 6.7
61emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chr... 40 6.7
62emb|BX088540.6| Zebrafish DNA sequence from clone CH211-225B7 in... 40 6.7
63emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, ... 40 6.7
64emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chr... 40 6.7
65gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome... 40 6.7
66emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chr... 40 6.7
67gb|M86665.1|ADRVA Enteric mastadenovirus h40 penton protein gene... 40 6.7
68emb|AL645687.13| Mouse DNA sequence from clone RP23-478H15 on ch... 40 6.7 
>ref|XM_482080.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1220

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                       
Query: 382 tcatggcattggagaaggctcctttgagcacttcggaaggttgaattgtactcttcgctc 441
           ||||||||||| ||||  |||||||||| ||||||| | ||||||||| ||| ||||  |
Sbjct: 780 tcatggcattgaagaacactcctttgagtacttcggcaagttgaattgcactgttcgtgc 721

                                                               
Query: 442 agcaaagtctggtggccgctggtatacaactgaagccgcatgaatcaagatg 493
           || ||||||||||||||||||| ||||||||||||| ||||| |||| ||||
Sbjct: 720 aggaaagtctggtggccgctggaatacaactgaagcagcatgtatcaggatg 669
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                            
Query: 382      tcatggcattggagaaggctcctttgagcacttcggaaggttgaattgtactcttcgctc 441
                ||||||||||| ||||  |||||||||| ||||||| | ||||||||| ||| ||||  |
Sbjct: 17630721 tcatggcattgaagaacactcctttgagtacttcggcaagttgaattgcactgttcgtgc 17630662

                                                                    
Query: 442      agcaaagtctggtggccgctggtatacaactgaagccgcatgaatcaagatg 493
                || ||||||||||||||||||| ||||||||||||| ||||| |||| ||||
Sbjct: 17630661 aggaaagtctggtggccgctggaatacaactgaagcagcatgtatcaggatg 17630610



 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                            
Query: 419      aggttgaattgtactcttcgctcagcaaagtctggtggccgctggtatacaactgaagcc 478
                |||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||| 
Sbjct: 17639103 aggttgaaatgtactcttcgctcgggaaagtctggtgggcgctggtatacaactgaagca 17639044

                               
Query: 479      gcatgaatcaagatg 493
                |||||||| ||||||
Sbjct: 17639043 gcatgaattaagatg 17639029
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>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0436B06
          Length = 148947

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                          
Query: 382    tcatggcattggagaaggctcctttgagcacttcggaaggttgaattgtactcttcgctc 441
              ||||||||||| ||||  |||||||||| ||||||| | ||||||||| ||| ||||  |
Sbjct: 107371 tcatggcattgaagaacactcctttgagtacttcggcaagttgaattgcactgttcgtgc 107312

                                                                  
Query: 442    agcaaagtctggtggccgctggtatacaactgaagccgcatgaatcaagatg 493
              || ||||||||||||||||||| ||||||||||||| ||||| |||| ||||
Sbjct: 107311 aggaaagtctggtggccgctggaatacaactgaagcagcatgtatcaggatg 107260



 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                          
Query: 419    aggttgaattgtactcttcgctcagcaaagtctggtggccgctggtatacaactgaagcc 478
              |||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||| 
Sbjct: 115753 aggttgaaatgtactcttcgctcgggaaagtctggtgggcgctggtatacaactgaagca 115694

                             
Query: 479    gcatgaatcaagatg 493
              |||||||| ||||||
Sbjct: 115693 gcatgaattaagatg 115679
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>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1705_C03
          Length = 118339

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                         
Query: 382   tcatggcattggagaaggctcctttgagcacttcggaaggttgaattgtactcttcgctc 441
             ||||||||||| ||||  |||||||||| ||||||| | ||||||||| ||| ||||  |
Sbjct: 16110 tcatggcattgaagaacactcctttgagtacttcggcaagttgaattgcactgttcgtgc 16051

                                                                 
Query: 442   agcaaagtctggtggccgctggtatacaactgaagccgcatgaatcaagatg 493
             || ||||||||||||||||||| ||||||||||||| ||||| |||| ||||
Sbjct: 16050 aggaaagtctggtggccgctggaatacaactgaagcagcatgtatcaggatg 15999



 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                         
Query: 419   aggttgaattgtactcttcgctcagcaaagtctggtggccgctggtatacaactgaagcc 478
             |||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||| 
Sbjct: 24492 aggttgaaatgtactcttcgctcgggaaagtctggtgggcgctggtatacaactgaagca 24433

                            
Query: 479   gcatgaatcaagatg 493
             |||||||| ||||||
Sbjct: 24432 gcatgaattaagatg 24418
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>dbj|AK120761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007F20, full
            insert sequence
          Length = 4545

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                        
Query: 382  tcatggcattggagaaggctcctttgagcacttcggaaggttgaattgtactcttcgctc 441
            ||||||||||| ||||  |||||||||| ||||||| | ||||||||| ||| ||||  |
Sbjct: 3173 tcatggcattgaagaacactcctttgagtacttcggcaagttgaattgcactgttcgtgc 3114

                                                                
Query: 442  agcaaagtctggtggccgctggtatacaactgaagccgcatgaatcaagatg 493
            || ||||||||||||||||||| ||||||||||||| ||||| |||| ||||
Sbjct: 3113 aggaaagtctggtggccgctggaatacaactgaagcagcatgtatcaggatg 3062
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>dbj|AK069663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030G02, full
           insert sequence
          Length = 1220

 Score =  103 bits (52), Expect = 5e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                       
Query: 382 tcatggcattggagaaggctcctttgagcacttcggaaggttgaattgtactcttcgctc 441
           ||||||||||| ||||  |||||||||| ||||||| | ||||||||| ||| ||||  |
Sbjct: 780 tcatggcattgaagaacactcctttgagtacttcggcaagttgaattgcactgttcgtgc 721

                                                               
Query: 442 agcaaagtctggtggccgctggtatacaactgaagccgcatgaatcaagatg 493
           || ||||||||||||||||||| ||||||||||||| ||||| |||| ||||
Sbjct: 720 aggaaagtctggtggccgctggaatacaactgaagcagcatgtatcaggatg 669
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>dbj|AK101135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026G16, full
            insert sequence
          Length = 2551

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                        
Query: 419  aggttgaattgtactcttcgctcagcaaagtctggtggccgctggtatacaactgaagcc 478
            |||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||| 
Sbjct: 2261 aggttgaaatgtactcttcgctcgggaaagtctggtgggcgctggtatacaactgaagca 2202

                           
Query: 479  gcatgaatcaagatg 493
            |||||||| ||||||
Sbjct: 2201 gcatgaattaagatg 2187
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>ref|XM_225089.3| PREDICTED: Rattus norvegicus similar to Contactin associated
            protein-like 3 precursor (Cell recognition molecule
            Caspr3) (LOC290952), mRNA
          Length = 3738

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 305  accaccatttcttctggtgtat 326
            ||||||||||||||||||||||
Sbjct: 2347 accaccatttcttctggtgtat 2368
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>emb|BX004984.6| Zebrafish DNA sequence from clone DKEY-3N4, complete sequence
          Length = 264738

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 250    gaataataaataaatcatataa 271
              ||||||||||||||||||||||
Sbjct: 176553 gaataataaataaatcatataa 176574
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>emb|AL953891.10| Zebrafish DNA sequence from clone DKEY-28P22, complete sequence
          Length = 242282

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 250   gaataataaataaatcatataa 271
             ||||||||||||||||||||||
Sbjct: 97743 gaataataaataaatcatataa 97764
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>gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete sequence
          Length = 137052

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   aataataaataaatcatataa 271
             |||||||||||||||||||||
Sbjct: 67974 aataataaataaatcatataa 67954
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>emb|BX663614.24| Zebrafish DNA sequence from clone DKEY-148L2 in linkage group 6, complete
              sequence
          Length = 191715

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 251    aataataaataaatcatataa 271
              |||||||||||||||||||||
Sbjct: 127948 aataataaataaatcatataa 127968
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>emb|CR533579.6| Zebrafish DNA sequence from clone CH211-232J20 in linkage group 25,
             complete sequence
          Length = 199156

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   aataataaataaatcatataa 271
             |||||||||||||||||||||
Sbjct: 55164 aataataaataaatcatataa 55184
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>gb|AC111111.11| Mus musculus chromosome 3, clone RP23-201A9, complete sequence
          Length = 233326

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    aataataaataaatcatataa 271
              |||||||||||||||||||||
Sbjct: 192611 aataataaataaatcatataa 192591
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>gb|AC110040.8| Mus musculus chromosome 3, clone RP23-276J3, complete sequence
          Length = 202391

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 251    aataataaataaatcatataa 271
              |||||||||||||||||||||
Sbjct: 181271 aataataaataaatcatataa 181291
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>gb|AC144766.18| Medicago truncatula clone mth2-17c2, complete sequence
          Length = 92099

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   aataataaataaatcatataa 271
             |||||||||||||||||||||
Sbjct: 12768 aataataaataaatcatataa 12748
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>emb|AL163284.2|HS21C084 Homo sapiens chromosome 21 segment HS21C084
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 314    tcttctggtgtatgtagtcttctgt 338
              ||||||| |||||||||||||||||
Sbjct: 134068 tcttctgctgtatgtagtcttctgt 134044
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>gb|AC149268.21| Medicago truncatula clone mth2-94j16, complete sequence
          Length = 146810

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 254   aataaataaatcatataacag 274
             |||||||||||||||||||||
Sbjct: 71033 aataaataaatcatataacag 71013
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>gb|AC135467.15| Medicago truncatula clone mth2-34h12, complete sequence
          Length = 114945

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    aataataaataaatcatataa 271
              |||||||||||||||||||||
Sbjct: 110341 aataataaataaatcatataa 110321
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>emb|AL512641.9| Human DNA sequence from clone RP11-139J15 on chromosome 10 Contains the
              5' end of a novel gene (LOC221078) (FLJ23743), two novel
              genes, the gene for ADP-ribosylation-like factor 8 (ARL8),
              a programmed cell death 8 (apoptosis-inducing factor)
              (PDCD8) pseudogene and a CpG island, complete sequence
          Length = 172688

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 254    aataaataaatcatataacagcacatgat 282
              |||||||||||||||| |||| |||||||
Sbjct: 115705 aataaataaatcatatgacagaacatgat 115677
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>gb|AC134043.1| Homo sapiens chromosome 5 clone RP11-175K6, complete sequence
          Length = 154098

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   atccaagaataataaataaat 264
             |||||||||||||||||||||
Sbjct: 21212 atccaagaataataaataaat 21232
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>gb|AC063918.21| Homo sapiens 3 BAC RP11-49C18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97001

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    tatgcaatgaatagaggacaa 74
             |||||||||||||||||||||
Sbjct: 27042 tatgcaatgaatagaggacaa 27022
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>gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete sequence
          Length = 159149

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   aataataaataaatcatataa 271
             |||||||||||||||||||||
Sbjct: 54392 aataataaataaatcatataa 54372
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>gb|AC011376.5| Homo sapiens chromosome 5 clone CTB-11I22, complete sequence
          Length = 132768

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   atccaagaataataaataaat 264
             |||||||||||||||||||||
Sbjct: 82722 atccaagaataataaataaat 82702
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>gb|AC138391.2| Homo sapiens chromosome 3 clone RP11-167C9, complete sequence
          Length = 184254

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 2     tactcaggtaagcaccaaacattttctga 30
             |||||||||||||| ||||||||| ||||
Sbjct: 87760 tactcaggtaagcaacaaacatttgctga 87732
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>dbj|BS000160.1| Pan troglodytes chromosome 22 clone:PTB-043M13, map 22, complete
             sequences
          Length = 141932

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 314   tcttctggtgtatgtagtcttctgt 338
             ||||||| |||||||||||||||||
Sbjct: 38449 tcttctgctgtatgtagtcttctgt 38425
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>emb|BX950224.7| Zebrafish DNA sequence from clone DKEY-284G18 in linkage group 18,
              complete sequence
          Length = 155246

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     taagcaccaaacattttctga 30
              |||||||||||||||||||||
Sbjct: 103464 taagcaccaaacattttctga 103444
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>gb|AC104928.8| Mus musculus chromosome 8, clone RP24-111K8, complete sequence
          Length = 177873

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 243    catccaagaataataaataaa 263
              |||||||||||||||||||||
Sbjct: 106055 catccaagaataataaataaa 106075
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>emb|AL773569.1|HS247E2 Homo sapiens chromosome 21 from PAC RP1-247E2 map 21q22.2,D21S349-MX1,
              complete sequence
          Length = 153402

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 314    tcttctggtgtatgtagtcttctgt 338
              ||||||| |||||||||||||||||
Sbjct: 105703 tcttctgctgtatgtagtcttctgt 105679
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>emb|AL671888.8| Mouse DNA sequence from clone RP23-247O14 on chromosome X, complete
            sequence
          Length = 52491

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 364  tgtgcatcctaatcctgatca 384
            |||||||||||||||||||||
Sbjct: 6226 tgtgcatcctaatcctgatca 6206
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>gb|AF500195.1| Oryzias latipes choriogenin H gene, complete cds
          Length = 2646

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 76   tatgtttgtcaaacgtttgaa 96
            |||||||||||||||||||||
Sbjct: 1714 tatgtttgtcaaacgtttgaa 1734
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>gb|AC186002.3| Pan troglodytes BAC clone CH251-86D23 from chromosome 9, complete
             sequence
          Length = 162651

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   catgatttggaaacctttta 296
             ||||||||||||||||||||
Sbjct: 33903 catgatttggaaacctttta 33922
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>gb|AC132385.5| Mus musculus BAC clone RP23-438F21 from chromosome 18, complete
            sequence
          Length = 184478

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  aataataaataaatcatata 270
            ||||||||||||||||||||
Sbjct: 7560 aataataaataaatcatata 7541
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>emb|CT009691.8| Zebrafish DNA sequence from clone CH73-64E1 in linkage group 5,
             complete sequence
          Length = 99497

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    ttgtcaaacgtttgaatttt 100
             ||||||||||||||||||||
Sbjct: 42528 ttgtcaaacgtttgaatttt 42547
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>gb|AC125122.4| Mus musculus BAC clone RP24-269O4 from chromosome 18, complete sequence
          Length = 173614

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   aataataaataaatcatata 270
             ||||||||||||||||||||
Sbjct: 28486 aataataaataaatcatata 28505
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>gb|AC125481.23| Medicago truncatula clone mth2-15n13, complete sequence
          Length = 121953

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   aataataaataaatcatata 270
             ||||||||||||||||||||
Sbjct: 34771 aataataaataaatcatata 34790
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>gb|AC146692.14| Medicago truncatula clone mth2-7n20, complete sequence
          Length = 108084

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   aataataaataaatcatata 270
             ||||||||||||||||||||
Sbjct: 69583 aataataaataaatcatata 69564
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>gb|AC123570.7| Medicago truncatula clone mth2-33l22, complete sequence
          Length = 95559

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    gtaagcaccaaacattttct 28
            ||||||||||||||||||||
Sbjct: 8817 gtaagcaccaaacattttct 8836
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>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains
             three novel pseudogenes, a pseudogene similar to part of
             meprin A, alpha (PABA peptide hydrolase) (MEP1A), a
             pseudogene similar to part of G protein-coupled receptor
             116 (GPR116), two novel genes, the 5' end of a novel gene
             similar to ankyrin repeat domain 20A (ANKRD20A) and three
             CpG islands, complete sequence
          Length = 165886

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   catgatttggaaacctttta 296
             ||||||||||||||||||||
Sbjct: 82508 catgatttggaaacctttta 82489
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>emb|AL360267.10| Human DNA sequence from clone RP11-342C20 on chromosome 13 Contains a
              RNA-binding protein LIN-28 pseudogene, a novel gene and the
              3' end of a novel gene, complete sequence
          Length = 157381

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     caaacattttctgaatgatgttct 40
              ||||| ||||||||||||||||||
Sbjct: 131927 caaactttttctgaatgatgttct 131950
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>emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chromosome 9 Contains two
              novel pseudogene, a CDRT15 protein pseudogene, a pseudogene
              similar to part of meprin A, alpha (PABA peptide hydrolase)
              (MEP1A) and two CpG islands, complete sequence
          Length = 178933

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    catgatttggaaacctttta 296
              ||||||||||||||||||||
Sbjct: 135446 catgatttggaaacctttta 135427
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>emb|AL513478.10| Human DNA sequence from clone RP11-327I22 on chromosome 9 Contains a
              pseudogene similar to part of sorting nexin associated
              golgi protein 1 (SNAG1), the ANKRD20A gene for ankyrin
              repeat domain 20A, five novel genes, a pseudogene similar
              to part of eprin A, alpha (PABA peptide hydrolase) (MEP1A)
              and a CpG island, complete sequence
          Length = 180498

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    catgatttggaaacctttta 296
              ||||||||||||||||||||
Sbjct: 171845 catgatttggaaacctttta 171864
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>gb|L19443.1| Human adenovirus F, complete genome
          Length = 34214

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   acatgatttggaaacctttt 295
             ||||||||||||||||||||
Sbjct: 14051 acatgatttggaaacctttt 14032
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>emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on chromosome 9 Contains a
              pseudogene similar to part of ribosomal protein L7a
              (RPL7A), three novel genes, three novel pseudogene and two
              CpG islands, complete sequence
          Length = 175271

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    catgatttggaaacctttta 296
              ||||||||||||||||||||
Sbjct: 170811 catgatttggaaacctttta 170792
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>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152737

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   catgatttggaaacctttta 296
             ||||||||||||||||||||
Sbjct: 49932 catgatttggaaacctttta 49913
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>emb|BX890572.9| Zebrafish DNA sequence from clone CH211-234F20 in linkage group 4
             Contains the gene for a novel protein containing two notch
             (DSL) domains and an EF hand domain, the gene for a novel
             protein similar to vertebrate myosin binding protein H
             (MYBPH), the gene for a novel protein sinilar to human and
             mouse CWF19-like 1, cell cycle control (S. pombe)
             (CWF19L1), the gene for a novel protein (zgc:55718), the
             gene for a novel protein containing Kelch motifs and a
             BTB/POZ domain, the sycp3 gene for synaptonemal complex
             protein 3, a novel gene and a CpG island, complete
             sequence
          Length = 166208

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 65    tagaggacaaatatgtttgtcaaa 88
             |||||||||||||||| |||||||
Sbjct: 96713 tagaggacaaatatgtctgtcaaa 96690
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>gb|AC183610.3| Pan troglodytes BAC clone CH251-223D9 from chromosome 9, complete
             sequence
          Length = 159456

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   catgatttggaaacctttta 296
             ||||||||||||||||||||
Sbjct: 45717 catgatttggaaacctttta 45736
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>gb|AC099671.2| Homo sapiens chromosome 1 clone RP11-466L22, complete sequence
          Length = 153934

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     aacattttctgaatgatgtt 38
              ||||||||||||||||||||
Sbjct: 103315 aacattttctgaatgatgtt 103296
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>gb|AC146862.24| Medicago truncatula clone mth2-174p12, complete sequence
          Length = 114731

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gcatccaagaataataaata 261
             ||||||||||||||||||||
Sbjct: 46503 gcatccaagaataataaata 46484
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>emb|CR392039.8| Human DNA sequence from clone bP-2171C21 on chromosome 21, complete
              sequence
          Length = 158069

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    catgatttggaaacctttta 296
              ||||||||||||||||||||
Sbjct: 147163 catgatttggaaacctttta 147144
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>gb|AC152920.17| Medicago truncatula clone mth2-101o15, complete sequence
          Length = 124934

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      gtaagcaccaaacattttct 28
              ||||||||||||||||||||
Sbjct: 115736 gtaagcaccaaacattttct 115755
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>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence
          Length = 121626

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  gcatccaagaataataaata 261
            ||||||||||||||||||||
Sbjct: 2070 gcatccaagaataataaata 2089
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>gb|AC135461.11| Medicago truncatula clone mth2-34f24, complete sequence
          Length = 132875

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    aataataaataaatcatata 270
              ||||||||||||||||||||
Sbjct: 113436 aataataaataaatcatata 113455
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>gb|AC124968.36| Medicago truncatula clone mth2-15e21, complete sequence
          Length = 106968

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     gtaagcaccaaacattttct 28
             ||||||||||||||||||||
Sbjct: 92530 gtaagcaccaaacattttct 92511
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>gb|AC137701.25| Medicago truncatula clone mth2-35h1, complete sequence
          Length = 151417

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   aataataaataaatcatata 270
             ||||||||||||||||||||
Sbjct: 51074 aataataaataaatcatata 51055
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>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence
          Length = 183917

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   catgatttggaaacctttta 296
             ||||||||||||||||||||
Sbjct: 80016 catgatttggaaacctttta 80035
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>gb|AC098973.2| Homo sapiens chromosome 3 clone RP11-286D1, complete sequence
          Length = 216172

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    tccaagaataataaataaat 264
              ||||||||||||||||||||
Sbjct: 138387 tccaagaataataaataaat 138368
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>emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chromosome 21, complete
              sequence
          Length = 278310

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    catgatttggaaacctttta 296
              ||||||||||||||||||||
Sbjct: 146092 catgatttggaaacctttta 146073
to top
>gb|AC010209.14| Homo sapiens 12 BAC RP11-427C3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 191148

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 247   caagaataataaataaatcatata 270
             |||||| |||||||||||||||||
Sbjct: 79833 caagaaaaataaataaatcatata 79810
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>gb|AF250284.1|AF250284 Amsacta moorei entomopoxvirus, complete genome
          Length = 232392

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   aataaataaatcatataaca 273
             ||||||||||||||||||||
Sbjct: 90286 aataaataaatcatataaca 90305
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>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete
             sequence
          Length = 219376

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   catgatttggaaacctttta 296
             ||||||||||||||||||||
Sbjct: 89027 catgatttggaaacctttta 89008
to top
>emb|BX088540.6| Zebrafish DNA sequence from clone CH211-225B7 in linkage group 15,
              complete sequence
          Length = 176569

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 19     aacattttctgaatgatgttcttatactgtac 50
              |||||||||||||| ||||| || ||||||||
Sbjct: 100343 aacattttctgaataatgttattgtactgtac 100374
to top
>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence
          Length = 148678

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 278  atgatttggaaaccttttagatcc 301
            ||||||||| ||||||||||||||
Sbjct: 5481 atgatttgggaaccttttagatcc 5458
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>emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chromosome 9, complete
              sequence
          Length = 176845

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    catgatttggaaacctttta 296
              ||||||||||||||||||||
Sbjct: 134948 catgatttggaaacctttta 134929
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>gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome 9, complete sequence
          Length = 190832

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   aataataaataaatcatata 270
             ||||||||||||||||||||
Sbjct: 91229 aataataaataaatcatata 91248
to top
>emb|AL626768.21| Mouse DNA sequence from clone RP23-347B4 on chromosome 4, complete
              sequence
          Length = 227165

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    aataataaataaatcatata 270
              ||||||||||||||||||||
Sbjct: 152060 aataataaataaatcatata 152041
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>gb|M86665.1|ADRVA Enteric mastadenovirus h40 penton protein gene, complete cds
          Length = 6351

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  acatgatttggaaacctttt 295
            ||||||||||||||||||||
Sbjct: 4657 acatgatttggaaacctttt 4638
to top
>emb|AL645687.13| Mouse DNA sequence from clone RP23-478H15 on chromosome 11, complete
             sequence
          Length = 156174

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   aataataaataaatcatata 270
             ||||||||||||||||||||
Sbjct: 90006 aataataaataaatcatata 90025


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,713,875
Number of Sequences: 3902068
Number of extensions: 5713875
Number of successful extensions: 130965
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130744
Number of HSP's gapped (non-prelim): 221
length of query: 493
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 471
effective length of database: 17,147,199,772
effective search space: 8076331092612
effective search space used: 8076331092612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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