ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_610366.2| PREDICTED: Bos taurus similar to pleckstrin hom... 38 0.62
2gb|AC135633.3| Mus musculus BAC clone RP24-84O13 from chromosome... 38 0.62
3gb|AC125524.4| Mus musculus BAC clone RP24-378N16 from chromosom... 38 0.62
4emb|AL845536.8| Mouse DNA sequence from clone RP23-311G5 on chro... 38 0.62
5gb|AC153727.6| Mus musculus BAC clone RP23-354L15 from chromosom... 36 2.4
6gb|AC159227.3| Mus musculus BAC clone RP24-334D12 from chromosom... 36 2.4
7ref|NM_195529.1| Oryza sativa (japonica cultivar-group) putative... 36 2.4
8gb|AC124770.4| Mus musculus BAC clone RP23-8J2 from chromosome 1... 36 2.4
9gb|AC100724.10| Mus musculus chromosome 17, clone RP24-120E11, c... 36 2.4
10gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome... 36 2.4
11gb|AC119236.8| Mus musculus chromosome 19, clone RP24-213B12, co... 36 2.4
12gb|AC160390.2| Mus musculus BAC clone RP24-465C5 from chromosome... 36 2.4
13gb|AY383615.1| Homo sapiens benzodiazapine receptor (peripheral)... 36 2.4
14emb|Z82214.23|HS526I14 Human DNA sequence from clone RP3-526I14 ... 36 2.4
15emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chr... 36 2.4
16gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare str... 36 2.4
17gb|DQ366709.1| Salmo salar myoblast determination protein 3 gene... 36 2.4
18gb|DQ317527.1| Salmo salar myoblast determination protein 3 mRNA... 36 2.4
19gb|AC170732.3| Sorex araneus clone SA_Ba-167D21, complete sequence 36 2.4
20gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare str... 36 2.4
21dbj|AK138027.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 36 2.4
22dbj|AK035407.1| Mus musculus adult male urinary bladder cDNA, RI... 36 2.4
23gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 36 2.4
24dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 36 2.4
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 36 2.4
26emb|BX248085.10| Zebrafish DNA sequence from clone DKEY-225E17 i... 36 2.4
27dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic D... 36 2.4
28emb|BX005420.7| Zebrafish DNA sequence from clone CH211-163I12 i... 36 2.4
29gb|AC151978.3| Mus musculus BAC clone RP24-545C19 from 19, compl... 36 2.4
30gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 36 2.4
31emb|AL627212.21| Mouse DNA sequence from clone RP23-145E1 on chr... 36 2.4
32gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 36 2.4
33gb|AC154211.1| Mus musculus BAC clone RP24-113P8 from 17, comple... 36 2.4
34emb|AL603804.18| Mouse DNA sequence from clone RP23-470C16 on ch... 36 2.4
35gb|AC165078.2| Mus musculus BAC clone RP24-287O1 from chromosome... 34 9.6
36gb|AC127026.19| Mus musculus chromosome 5, clone RP24-394H13, co... 34 9.6
37gb|AC164118.4| Mus musculus BAC clone RP24-263C5 from chromosome... 34 9.6
38gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome... 34 9.6
39gb|AC132084.2| Mus musculus BAC clone RP24-544J20 from chromosom... 34 9.6
40gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete seq... 34 9.6
41gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosom... 34 9.6
42gb|AC122460.4| Mus musculus BAC clone RP24-283I1 from chromosome... 34 9.6
43gb|AC126807.4| Mus musculus BAC clone RP23-306D4 from chromosome... 34 9.6
44gb|AC118022.12| Mus musculus chromosome 15, clone RP23-459I23, c... 34 9.6
45gb|AC159626.2| Mus musculus BAC clone RP24-209A23 from chromosom... 34 9.6
46gb|AC087363.17| Homo sapiens chromosome 8, clone RP11-529P14, co... 34 9.6
47emb|AL714022.6| Human DNA sequence from clone RP11-91I11 on chro... 34 9.6
48emb|AL390957.14| Human DNA sequence from clone RP11-417A21 on ch... 34 9.6
49emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on ch... 34 9.6
50emb|AL359435.7| Human DNA sequence from clone RP11-530J24 on chr... 34 9.6
51emb|AL158071.23| Human DNA sequence from clone RP11-305L7 on chr... 34 9.6
52emb|AL049564.11|HSDJ808O4 Human DNA sequence from clone RP4-808O... 34 9.6
53emb|AL845475.12| Mouse DNA sequence from clone RP23-403E20 on ch... 34 9.6
54gb|AC027157.7| Homo sapiens chromosome 11, clone RP11-64I17, com... 34 9.6
55gb|AC154350.3| Mus musculus BAC clone RP23-225B15 from chromosom... 34 9.6
56gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, comp... 34 9.6
57gb|AC091545.4| Homo sapiens chromosome 8, clone RP3-491L6, compl... 34 9.6
58gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complet... 34 9.6
59gb|AC105254.3| Homo sapiens BAC clone RP11-647P12 from 4, comple... 34 9.6
60gb|AC097509.2| Homo sapiens chromosome 4 clone RP11-381P8, compl... 34 9.6
61emb|BX323985.8| Zebrafish DNA sequence from clone CH211-194D1 in... 34 9.6
62gb|AC154764.2| Mus musculus BAC clone RP24-423N7 from chromosome... 34 9.6
63gb|AC016720.9| Homo sapiens BAC clone RP11-326G23 from 2, comple... 34 9.6
64gb|AC021075.11|AC021075 Homo sapiens 3 BAC RP11-242C15 (Roswell ... 34 9.6
65gb|AC129925.12| Homo sapiens chromosome 8, clone RP11-640H15, co... 34 9.6
66emb|AJ223826.1|SYSVAJ826 Shallot yellow stripe virus, genomic RN... 34 9.6
67emb|Y11747.1|SYSVPOLY Shallot yellow stripe virus RNA encoding p... 34 9.6
68gb|AF204747.1|AF204747 Newcastle disease virus isolate APMV1/Des... 34 9.6
69gb|AC108782.9| Mus musculus chromosome 8, clone RP23-350C11, com... 34 9.6
70gb|AC117700.22| Mus musculus chromosome 15, clone RP23-455J20, c... 34 9.6
71emb|CT027564.7| Mouse DNA sequence from clone RP24-293N14 on chr... 34 9.6
72emb|CT030157.8| Mouse DNA sequence from clone RP24-316P8 on chro... 34 9.6
73gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, comple... 34 9.6
74emb|AL844888.12| Mouse DNA sequence from clone RP23-193F18 on ch... 34 9.6
75emb|AL732425.7| Mouse DNA sequence from clone RP23-364L1 on chro... 34 9.6 
>ref|XM_610366.2| PREDICTED: Bos taurus similar to pleckstrin homology domain
            containing, family M (with RUN domain) member 1
            (LOC531863), partial mRNA
          Length = 1993

 Score = 38.2 bits (19), Expect = 0.62
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 9    tgaggaccactttctttcccttc 31
            |||||||||| ||||||||||||
Sbjct: 1104 tgaggaccacgttctttcccttc 1126
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>gb|AC135633.3| Mus musculus BAC clone RP24-84O13 from chromosome 19, complete sequence
          Length = 185138

 Score = 38.2 bits (19), Expect = 0.62
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 2      ggaaagttgaggaccactttctt 24
              ||||||||||| |||||||||||
Sbjct: 121039 ggaaagttgagaaccactttctt 121061
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>gb|AC125524.4| Mus musculus BAC clone RP24-378N16 from chromosome 6, complete sequence
          Length = 175917

 Score = 38.2 bits (19), Expect = 0.62
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      gggaaagttgaggaccact 19
              |||||||||||||||||||
Sbjct: 120132 gggaaagttgaggaccact 120150
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>emb|AL845536.8| Mouse DNA sequence from clone RP23-311G5 on chromosome 2, complete
              sequence
          Length = 179612

 Score = 38.2 bits (19), Expect = 0.62
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      ggaaagttgaggaccactt 20
              |||||||||||||||||||
Sbjct: 125295 ggaaagttgaggaccactt 125313
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>gb|AC153727.6| Mus musculus BAC clone RP23-354L15 from chromosome 12, complete sequence
          Length = 202733

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                        
Query: 6      agttgaggaccactttctttcccttc 31
              |||||| ||||||||||||| |||||
Sbjct: 184479 agttgaagaccactttcttttccttc 184454
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>gb|AC159227.3| Mus musculus BAC clone RP24-334D12 from chromosome 12, complete
             sequence
          Length = 211971

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     ggaaagttgaggaccact 19
             ||||||||||||||||||
Sbjct: 74360 ggaaagttgaggaccact 74377
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>ref|NM_195529.1| Oryza sativa (japonica cultivar-group) putative retroelement
            (OSJNAa0082N11.3), mRNA
          Length = 5535

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   gaccactttctttccctt 30
            ||||||||||||||||||
Sbjct: 1941 gaccactttctttccctt 1924
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>gb|AC124770.4| Mus musculus BAC clone RP23-8J2 from chromosome 18, complete sequence
          Length = 216754

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     ggaaagttgaggaccact 19
             ||||||||||||||||||
Sbjct: 65324 ggaaagttgaggaccact 65307
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>gb|AC100724.10| Mus musculus chromosome 17, clone RP24-120E11, complete sequence
          Length = 179334

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 2      ggaaagttgaggaccact 19
              ||||||||||||||||||
Sbjct: 159764 ggaaagttgaggaccact 159747
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>gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome 13, complete sequence
          Length = 192969

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     ggaaagttgaggaccact 19
             ||||||||||||||||||
Sbjct: 45406 ggaaagttgaggaccact 45389
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>gb|AC119236.8| Mus musculus chromosome 19, clone RP24-213B12, complete sequence
          Length = 163348

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     gggaaagttgaggaccac 18
             ||||||||||||||||||
Sbjct: 84486 gggaaagttgaggaccac 84503
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>gb|AC160390.2| Mus musculus BAC clone RP24-465C5 from chromosome 12, complete
            sequence
          Length = 152049

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 2    ggaaagttgaggaccact 19
            ||||||||||||||||||
Sbjct: 3726 ggaaagttgaggaccact 3743
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>gb|AY383615.1| Homo sapiens benzodiazapine receptor (peripheral) (BZRP) gene,
            complete cds
          Length = 13942

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   gaggaccactttctttcc 27
            ||||||||||||||||||
Sbjct: 1906 gaggaccactttctttcc 1923
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>emb|Z82214.23|HS526I14 Human DNA sequence from clone RP3-526I14 on chromosome 22, complete
            sequence
          Length = 129389

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   gaggaccactttctttcc 27
            ||||||||||||||||||
Sbjct: 7257 gaggaccactttctttcc 7274
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>emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chromosome 1 Contains a
             fatty acid binding protein, muscle and heart
             (mammary-derived growth inhibitor) pseudogene and part of
             the AKT3 gene for  v-akt murine thymoma viral oncogene
             homolog 3 (protein kinase B, gamma), complete sequence
          Length = 127036

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    accactttctttcccttc 31
             ||||||||||||||||||
Sbjct: 50421 accactttctttcccttc 50404
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>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0082N11, from chromosome 10, complete sequence
          Length = 127525

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    gaccactttctttccctt 30
             ||||||||||||||||||
Sbjct: 17783 gaccactttctttccctt 17800
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>gb|DQ366709.1| Salmo salar myoblast determination protein 3 gene, complete cds
          Length = 1815

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 13   gaccactttctttccctt 30
            ||||||||||||||||||
Sbjct: 1559 gaccactttctttccctt 1576
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>gb|DQ317527.1| Salmo salar myoblast determination protein 3 mRNA, complete cds
          Length = 1325

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 13   gaccactttctttccctt 30
            ||||||||||||||||||
Sbjct: 1069 gaccactttctttccctt 1086
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>gb|AC170732.3| Sorex araneus clone SA_Ba-167D21, complete sequence
          Length = 160765

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   accactttctttcccttc 31
            ||||||||||||||||||
Sbjct: 8178 accactttctttcccttc 8161
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>gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0082N11, from chromosome 10, complete sequence
          Length = 183345

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     gaccactttctttccctt 30
              ||||||||||||||||||
Sbjct: 141128 gaccactttctttccctt 141145
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>dbj|AK138027.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130073P11 product:unclassifiable, full
            insert sequence
          Length = 3096

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 2    ggaaagttgaggaccact 19
            ||||||||||||||||||
Sbjct: 2731 ggaaagttgaggaccact 2714
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>dbj|AK035407.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530034D22 product:weakly similar
            to HYPOTHETICAL 7.7 KDA PROTEIN (FRAGMENT) [Mus
            musculus], full insert sequence
          Length = 2273

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 2    ggaaagttgaggaccact 19
            ||||||||||||||||||
Sbjct: 2005 ggaaagttgaggaccact 1988
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 14      accactttctttcccttc 31
               ||||||||||||||||||
Sbjct: 1995909 accactttctttcccttc 1995892
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 13      gaccactttctttccctt 30
               ||||||||||||||||||
Sbjct: 7507264 gaccactttctttccctt 7507281
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     gaccactttctttccctt 30
              ||||||||||||||||||
Sbjct: 949454 gaccactttctttccctt 949471
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>emb|BX248085.10| Zebrafish DNA sequence from clone DKEY-225E17 in linkage group 25,
             complete sequence
          Length = 159178

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    accactttctttcccttc 31
             ||||||||||||||||||
Sbjct: 64444 accactttctttcccttc 64427
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>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698G03
          Length = 147857

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    gaccactttctttccctt 30
             ||||||||||||||||||
Sbjct: 84899 gaccactttctttccctt 84916
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>emb|BX005420.7| Zebrafish DNA sequence from clone CH211-163I12 in linkage group 25,
             complete sequence
          Length = 142324

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    accactttctttcccttc 31
             ||||||||||||||||||
Sbjct: 16929 accactttctttcccttc 16946
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>gb|AC151978.3| Mus musculus BAC clone RP24-545C19 from 19, complete sequence
          Length = 163426

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      gggaaagttgaggaccac 18
              ||||||||||||||||||
Sbjct: 141959 gggaaagttgaggaccac 141942
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 13      gaccactttctttccctt 30
               ||||||||||||||||||
Sbjct: 7511463 gaccactttctttccctt 7511480
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>emb|AL627212.21| Mouse DNA sequence from clone RP23-145E1 on chromosome 4, complete
             sequence
          Length = 207362

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     ggaaagttgaggaccact 19
             ||||||||||||||||||
Sbjct: 62098 ggaaagttgaggaccact 62115
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 14      accactttctttcccttc 31
               ||||||||||||||||||
Sbjct: 3393882 accactttctttcccttc 3393865
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>gb|AC154211.1| Mus musculus BAC clone RP24-113P8 from 17, complete sequence
          Length = 146732

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      ggaaagttgaggaccact 19
              ||||||||||||||||||
Sbjct: 135488 ggaaagttgaggaccact 135505
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>emb|AL603804.18| Mouse DNA sequence from clone RP23-470C16 on chromosome 11, complete
             sequence
          Length = 189196

 Score = 36.2 bits (18), Expect = 2.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     gggaaagttgaggaccac 18
             ||||||||||||||||||
Sbjct: 40060 gggaaagttgaggaccac 40043
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>gb|AC165078.2| Mus musculus BAC clone RP24-287O1 from chromosome 12, complete sequence
          Length = 172492

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 8      ttgaggaccactttctt 24
              |||||||||||||||||
Sbjct: 136612 ttgaggaccactttctt 136596
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>gb|AC127026.19| Mus musculus chromosome 5, clone RP24-394H13, complete sequence
          Length = 212213

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 10    gaggaccactttctttc 26
             |||||||||||||||||
Sbjct: 33771 gaggaccactttctttc 33755
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>gb|AC164118.4| Mus musculus BAC clone RP24-263C5 from chromosome 5, complete
            sequence
          Length = 166574

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 9    tgaggaccactttcttt 25
            |||||||||||||||||
Sbjct: 1227 tgaggaccactttcttt 1243
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>gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome 10, complete sequence
          Length = 226256

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 2      ggaaagttgaggaccac 18
              |||||||||||||||||
Sbjct: 154504 ggaaagttgaggaccac 154520
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>gb|AC132084.2| Mus musculus BAC clone RP24-544J20 from chromosome 5, complete sequence
          Length = 119933

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 9     tgaggaccactttcttt 25
             |||||||||||||||||
Sbjct: 42251 tgaggaccactttcttt 42235
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>gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete sequence
          Length = 196835

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 5     aagttgaggaccacttt 21
             |||||||||||||||||
Sbjct: 99216 aagttgaggaccacttt 99200
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>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete sequence
          Length = 190295

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 2      ggaaagttgaggaccac 18
              |||||||||||||||||
Sbjct: 183020 ggaaagttgaggaccac 183004
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>gb|AC122460.4| Mus musculus BAC clone RP24-283I1 from chromosome 19, complete sequence
          Length = 173119

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 3      gaaagttgaggaccact 19
              |||||||||||||||||
Sbjct: 166604 gaaagttgaggaccact 166620
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>gb|AC126807.4| Mus musculus BAC clone RP23-306D4 from chromosome 18, complete sequence
          Length = 244566

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 3      gaaagttgaggaccact 19
              |||||||||||||||||
Sbjct: 199878 gaaagttgaggaccact 199862
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>gb|AC118022.12| Mus musculus chromosome 15, clone RP23-459I23, complete sequence
          Length = 190653

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 14    accactttctttccctt 30
             |||||||||||||||||
Sbjct: 84903 accactttctttccctt 84919
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>gb|AC159626.2| Mus musculus BAC clone RP24-209A23 from chromosome 12, complete
            sequence
          Length = 157411

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 8    ttgaggaccactttctt 24
            |||||||||||||||||
Sbjct: 5150 ttgaggaccactttctt 5134
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>gb|AC087363.17| Homo sapiens chromosome 8, clone RP11-529P14, complete sequence
          Length = 174028

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 15     ccactttctttcccttc 31
              |||||||||||||||||
Sbjct: 135688 ccactttctttcccttc 135672
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>emb|AL714022.6| Human DNA sequence from clone RP11-91I11 on chromosome 1 Contains a
             ribosomal protein L39 (RPL39) pseudogene, complete
             sequence
          Length = 63059

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 15    ccactttctttcccttc 31
             |||||||||||||||||
Sbjct: 10633 ccactttctttcccttc 10617
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>emb|AL390957.14| Human DNA sequence from clone RP11-417A21 on chromosome 1 Contains a
            unprocessed pseudogene similar to regulator of G-protein
            signalling 18 (RGS18), complete sequence
          Length = 153856

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 15   ccactttctttcccttc 31
            |||||||||||||||||
Sbjct: 2092 ccactttctttcccttc 2108
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>emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on chromosome 10 Contains part
              of the CACNB2 gene for calcium channel voltage-dependent
              beta 2 subunit and a novel gene, complete sequence
          Length = 177656

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 5      aagttgaggaccacttt 21
              |||||||||||||||||
Sbjct: 162075 aagttgaggaccacttt 162059
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>emb|AL359435.7| Human DNA sequence from clone RP11-530J24 on chromosome 1, complete
              sequence
          Length = 156947

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 15     ccactttctttcccttc 31
              |||||||||||||||||
Sbjct: 124717 ccactttctttcccttc 124701
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>emb|AL158071.23| Human DNA sequence from clone RP11-305L7 on chromosome 9 Contains four
             novel genes, a peptidylpolyl isomerase A (cyclophilin A)
             (PPIA) pseudogene, the 3' end of the AUH gene for AU RNA
             binding protein/enoyl-Coenzyme A hydratase and three CpG
             islands, complete sequence
          Length = 181623

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 4     aaagttgaggaccactt 20
             |||||||||||||||||
Sbjct: 49651 aaagttgaggaccactt 49635
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>emb|AL049564.11|HSDJ808O4 Human DNA sequence from clone RP4-808O4 on chromosome Xq11.1-12 Contains
              the 5' end of the AR gene for androgen receptor
              (dihydrotestosterone receptor; testicular feminization;
              spinal and bulbar muscular atrophy; Kennedy disease), a
              poly(A) binding protein, nuclear 1 (PABPN1) pseudogene and
              two CpG islands, complete sequence
          Length = 139033

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 13     gaccactttctttccct 29
              |||||||||||||||||
Sbjct: 106235 gaccactttctttccct 106219
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>emb|AL845475.12| Mouse DNA sequence from clone RP23-403E20 on chromosome 11 Contains a
             novel pseudogene (similar to RIKEN cDNA 4833439L19 gene)
             and a ribosomal protein L26 (Rpl26) pseudogene, complete
             sequence
          Length = 147170

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 2     ggaaagttgaggaccac 18
             |||||||||||||||||
Sbjct: 78509 ggaaagttgaggaccac 78493
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>gb|AC027157.7| Homo sapiens chromosome 11, clone RP11-64I17, complete sequence
          Length = 158529

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 8     ttgaggaccactttctt 24
             |||||||||||||||||
Sbjct: 84292 ttgaggaccactttctt 84276
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>gb|AC154350.3| Mus musculus BAC clone RP23-225B15 from chromosome 13, complete
             sequence
          Length = 213847

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 4     aaagttgaggaccactt 20
             |||||||||||||||||
Sbjct: 47440 aaagttgaggaccactt 47424
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>gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, complete sequence
          Length = 157672

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 15     ccactttctttcccttc 31
              |||||||||||||||||
Sbjct: 140333 ccactttctttcccttc 140349
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>gb|AC091545.4| Homo sapiens chromosome 8, clone RP3-491L6, complete sequence
          Length = 75148

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 15    ccactttctttcccttc 31
             |||||||||||||||||
Sbjct: 51288 ccactttctttcccttc 51304
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>gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complete sequence
          Length = 148673

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 15     ccactttctttcccttc 31
              |||||||||||||||||
Sbjct: 122743 ccactttctttcccttc 122727
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>gb|AC105254.3| Homo sapiens BAC clone RP11-647P12 from 4, complete sequence
          Length = 176840

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 4     aaagttgaggaccactt 20
             |||||||||||||||||
Sbjct: 89755 aaagttgaggaccactt 89739
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>gb|AC097509.2| Homo sapiens chromosome 4 clone RP11-381P8, complete sequence
          Length = 62268

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 15    ccactttctttcccttc 31
             |||||||||||||||||
Sbjct: 59065 ccactttctttcccttc 59049
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>emb|BX323985.8| Zebrafish DNA sequence from clone CH211-194D1 in linkage group 17,
              complete sequence
          Length = 198162

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 3      gaaagttgaggaccact 19
              |||||||||||||||||
Sbjct: 185758 gaaagttgaggaccact 185774
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>gb|AC154764.2| Mus musculus BAC clone RP24-423N7 from chromosome 16, complete
            sequence
          Length = 159556

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 2    ggaaagttgaggaccac 18
            |||||||||||||||||
Sbjct: 9855 ggaaagttgaggaccac 9871
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>gb|AC016720.9| Homo sapiens BAC clone RP11-326G23 from 2, complete sequence
          Length = 154318

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 3      gaaagttgaggaccact 19
              |||||||||||||||||
Sbjct: 105344 gaaagttgaggaccact 105328
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>gb|AC021075.11|AC021075 Homo sapiens 3 BAC RP11-242C15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 63632

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 15    ccactttctttcccttc 31
             |||||||||||||||||
Sbjct: 35924 ccactttctttcccttc 35940
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>gb|AC129925.12| Homo sapiens chromosome 8, clone RP11-640H15, complete sequence
          Length = 74845

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 15    ccactttctttcccttc 31
             |||||||||||||||||
Sbjct: 19551 ccactttctttcccttc 19535
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>emb|AJ223826.1|SYSVAJ826 Shallot yellow stripe virus, genomic RNA for coat protein
          Length = 1146

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 7   gttgaggaccactttctttcc 27
           |||||| ||||||||||||||
Sbjct: 345 gttgagtaccactttctttcc 325
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>emb|Y11747.1|SYSVPOLY Shallot yellow stripe virus RNA encoding polyprotein precursor
          Length = 1011

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 7   gttgaggaccactttctttcc 27
           |||||| ||||||||||||||
Sbjct: 201 gttgagtaccactttctttcc 181
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>gb|AF204747.1|AF204747 Newcastle disease virus isolate APMV1/Desi
           Chicken/Chennai/India/D1/ 1995 fusion protein and matrix
           protein genes, partial cds
          Length = 486

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 15  ccactttctttcccttc 31
           |||||||||||||||||
Sbjct: 417 ccactttctttcccttc 401
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>gb|AC108782.9| Mus musculus chromosome 8, clone RP23-350C11, complete sequence
          Length = 221428

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 11     aggaccactttctttcc 27
              |||||||||||||||||
Sbjct: 129335 aggaccactttctttcc 129319
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>gb|AC117700.22| Mus musculus chromosome 15, clone RP23-455J20, complete sequence
          Length = 187994

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 3     gaaagttgaggaccact 19
             |||||||||||||||||
Sbjct: 24292 gaaagttgaggaccact 24276
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>emb|CT027564.7| Mouse DNA sequence from clone RP24-293N14 on chromosome 16, complete
              sequence
          Length = 180784

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 2      ggaaagttgaggaccac 18
              |||||||||||||||||
Sbjct: 173998 ggaaagttgaggaccac 174014
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>emb|CT030157.8| Mouse DNA sequence from clone RP24-316P8 on chromosome 12, complete
              sequence
          Length = 199971

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 9      tgaggaccactttcttt 25
              |||||||||||||||||
Sbjct: 153561 tgaggaccactttcttt 153545
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>gb|AC151413.2| Mus musculus BAC clone RP23-103N6 from 19, complete sequence
          Length = 230420

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 3     gaaagttgaggaccact 19
             |||||||||||||||||
Sbjct: 76950 gaaagttgaggaccact 76966
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>emb|AL844888.12| Mouse DNA sequence from clone RP23-193F18 on chromosome 2, complete
              sequence
          Length = 225216

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 14     accactttctttccctt 30
              |||||||||||||||||
Sbjct: 127762 accactttctttccctt 127778
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>emb|AL732425.7| Mouse DNA sequence from clone RP23-364L1 on chromosome X, complete
              sequence
          Length = 145042

 Score = 34.2 bits (17), Expect = 9.6
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 1      gggaaagttgaggacca 17
              |||||||||||||||||
Sbjct: 131676 gggaaagttgaggacca 131660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 331,656
Number of Sequences: 3902068
Number of extensions: 331656
Number of successful extensions: 95359
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95125
Number of HSP's gapped (non-prelim): 234
length of query: 31
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 11
effective length of database: 17,155,003,908
effective search space: 188705042988
effective search space used: 188705042988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)
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