ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C56D1_HUMAN (Q8N8Q1) Cytochrome b561 domain-containing protein 1 29 4.1
2SRYA_DROME (P07666) Serendipity locus protein alpha 29 4.1
3AMDY_YEAST (P22580) Probable amidase (EC 3.5.1.4) 29 5.4
4SRYA_DROPS (Q07964) Serendipity locus protein alpha 28 7.1
5ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot... 28 9.2
6ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein 28 9.2
7URE1_YERPS (P52313) Urease alpha subunit (EC 3.5.1.5) (Urea amid... 28 9.2
8URE1_YERPE (Q9ZFR9) Urease alpha subunit (EC 3.5.1.5) (Urea amid... 28 9.2
9SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro... 28 9.2

>C56D1_HUMAN (Q8N8Q1) Cytochrome b561 domain-containing protein 1|
          Length = 229

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 62  SLFAWEKGMMSLNLCLCGSAAPRMILPKMK*TRRYFFYQIKARKR 196
           SLF+W    M+L  CLC + A  +  P+      +FF   KAR R
Sbjct: 50  SLFSWHPVFMALAFCLCMAEAILLFSPEHS---LFFFCSRKARIR 91



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>SRYA_DROME (P07666) Serendipity locus protein alpha|
          Length = 530

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 274 PSSSSSLHQAYIVQLHFGANVLVIRDYTYPV 366
           P S+SS H A ++Q HF   +L+ R+  + +
Sbjct: 323 PESTSSAHHAEVLQEHFNQELLIFRNVIHEI 353



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>AMDY_YEAST (P22580) Probable amidase (EC 3.5.1.4)|
          Length = 549

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
 Frame = +1

Query: 247 CPPW-----CCAFH-PSSSSSLHQAYIVQLHFGANVL 339
           C PW     C  +H  SS+S LH  Y+V + +G  V+
Sbjct: 293 CQPWVQDVKCIPYHFDSSTSKLHDNYVVGIWYGDGVI 329



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>SRYA_DROPS (Q07964) Serendipity locus protein alpha|
          Length = 549

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 262 CAFHPSSSSSLHQAYIVQLHFGANVLVIRDYTYPVETSKKKIH 390
           C      SS+LH A I++ HF   +L+ R+  + +  S+  ++
Sbjct: 332 CIVPALQSSALHHADILEHHFNGEMLIFRNLIHDIIDSRSLVN 374



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>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
           (Ataxin-2-related protein)
          Length = 1075

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 301 AYIVQLHFGANVLVIRDYTYPVETSKKKIHGKQEATAGT 417
           +YI Q+H G  V   + Y YPV  S     GK     G+
Sbjct: 712 SYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGS 750



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>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein|
          Length = 1049

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 301 AYIVQLHFGANVLVIRDYTYPVETSKKKIHGKQEATAGT 417
           +YI Q+H G  V   + Y YPV  S     GK     G+
Sbjct: 715 SYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGS 753



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>URE1_YERPS (P52313) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase|
           alpha subunit)
          Length = 572

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 275 GWNAQHHGGQCLRALRHVLIMSMCVPLSFSL*SDKRNTFWFISSWEGSFLGQHCHT 108
           G+      G    ALRH L M+  V +  S+ +D  N   ++     +F G+  HT
Sbjct: 220 GYKVHEDWGATANALRHALRMADEVDIQVSVHTDSLNECGYVEDTIDAFEGRTIHT 275



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>URE1_YERPE (Q9ZFR9) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase|
           alpha subunit)
          Length = 572

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 275 GWNAQHHGGQCLRALRHVLIMSMCVPLSFSL*SDKRNTFWFISSWEGSFLGQHCHT 108
           G+      G    ALRH L M+  V +  S+ +D  N   ++     +F G+  HT
Sbjct: 220 GYKVHEDWGATANALRHALRMADEVDIQVSVHTDSLNECGYVEDTIDAFEGRTIHT 275



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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 163 PSGLFHLGKDHSWGSTATQTQIKAHHPFLPSKKR 62
           P GL  LGK    G  AT++    HH   PS +R
Sbjct: 841 PGGLASLGKHRPKGFFATESSFDPHHRAQPSYER 874


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,522,777
Number of Sequences: 219361
Number of extensions: 1300635
Number of successful extensions: 2768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2768
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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