ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart17g03 |
|---|---|
| Clone Library Name | barley_pub |
>MRC2_HUMAN (Q9UBG0) Macrophage mannose receptor 2 precursor (Urokinase| receptor-associated protein) (Endocytic receptor 180) (CD280 antigen) Length = 1479 Score = 30.4 bits (67), Expect = 2.6 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -2 Query: 313 VLMALLQLFALCAMTAFYYERRENMD-GQLGATRYAKLSSEESNA 182 VLMA+L L AL Y RR++++ G RY++ SS + A Sbjct: 1418 VLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEA 1462
>NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor| (Na(+)/Ca(2+)-exchange protein 3) Length = 927 Score = 30.0 bits (66), Expect = 3.4 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 316 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 197 A + L +FA ++ Y RR ++ G+LG R KL++ Sbjct: 862 AFSVTLFTIFAFVCLSVLLYRRRPHLGGELGGPRGCKLAT 901
>NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor| (Na(+)/Ca(2+)-exchange protein 3) Length = 927 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -2 Query: 316 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 197 A + L +FA ++ Y RR ++ G+LG R KL++ Sbjct: 862 AFSVTLFTIFAFVCISVLLYRRRPHLGGELGGPRGCKLAT 901
>HTPX_STRMU (Q93D93) Probable protease htpX homolog (EC 3.4.24.-)| Length = 299 Score = 29.6 bits (65), Expect = 4.4 Identities = 19/64 (29%), Positives = 31/64 (48%) Frame = -2 Query: 463 RLAKGKKWQVVLYIAVTGALAAVLSPVHTLARTCAGNSVALGLLLGFVYAVLMALLQLFA 284 ++A K+ +VL I LAA+ + V L +A+ L++GF+YA M Sbjct: 5 QIASNKRKTIVLLIVFFMLLAAIGAAVGYLWLDSLVGGMAIALIIGFIYAFSMIFQSTNI 64 Query: 283 LCAM 272 + AM Sbjct: 65 VMAM 68
>PDR12_ORYSA (Q5Z9S8) Pleiotropic drug resistance protein 12| Length = 1500 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/68 (22%), Positives = 32/68 (47%) Frame = -2 Query: 463 RLAKGKKWQVVLYIAVTGALAAVLSPVHTLARTCAGNSVALGLLLGFVYAVLMALLQLFA 284 R+ G + V++I + A + P+ ++ RT A G+ YA+ ++++ Sbjct: 1276 RMVIGAMYTAVMFIGINNC--ATVQPIVSIERTVFYRERAAGMYSAMPYAIAQVVMEIPY 1333 Query: 283 LCAMTAFY 260 + TA+Y Sbjct: 1334 VFVQTAYY 1341
>Y2989_METCA (Q602S2) UPF0078 membrane protein MCA2989| Length = 198 Score = 29.3 bits (64), Expect = 5.8 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -2 Query: 460 LAKGKKWQVVLYIAVT-GALAAVLSPVHTLARTCAGNSVALGLLLGFVYAV-LMALLQLF 287 +AK L+ A+ A L PV + G + ALG+LLGF + V LMALL Sbjct: 71 IAKSMAVSPPLFAAIGFAAFVGHLYPVFFQFKGGKGVATALGVLLGFAWPVGLMALLTWI 130 Query: 286 ALCAMTAF 263 + A+ F Sbjct: 131 GVAALFRF 138
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 29.3 bits (64), Expect = 5.8 Identities = 20/74 (27%), Positives = 32/74 (43%) Frame = -2 Query: 463 RLAKGKKWQVVLYIAVTGALAAVLSPVHTLARTCAGNSVALGLLLGFVYAVLMALLQLFA 284 R A G+ W ++ ++G S + L R C GN A + F++ +L LF Sbjct: 1751 RSATGEAWHNIMLSCLSGKPCDKNSGI--LTREC-GNEFAYFYFVSFIFLCSFLMLNLFV 1807 Query: 283 LCAMTAFYYERREN 242 M F Y R++ Sbjct: 1808 AVIMDNFEYLTRDS 1821
>ORML3_RAT (Q6QI25) ORM1-like protein 3 (Liver regeneration-related protein| LRRGT00183) Length = 153 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 97 FLNTVQAILFLYTQFYTKYDEV 32 FL +L+ T FYTKYD+V Sbjct: 101 FLTITPIVLYFLTSFYTKYDQV 122
>ORML3_PONPY (Q5R570) ORM1-like protein 3| Length = 153 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 97 FLNTVQAILFLYTQFYTKYDEVSTTL 20 FL +L+ T FYTKYD++ L Sbjct: 101 FLTITPIVLYFLTSFYTKYDQIHFVL 126
>ORML3_MOUSE (Q9CPZ6) ORM1-like protein 3| Length = 153 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 97 FLNTVQAILFLYTQFYTKYDEV 32 FL +L+ T FYTKYD+V Sbjct: 101 FLTITPIVLYFLTSFYTKYDQV 122
>ORML3_HUMAN (Q8N138) ORM1-like protein 3| Length = 153 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 97 FLNTVQAILFLYTQFYTKYDEVSTTL 20 FL +L+ T FYTKYD++ L Sbjct: 101 FLTITPIVLYFLTSFYTKYDQIHFVL 126
>MYO1_SCHPO (Q9Y7Z8) Myosin-1| Length = 1217 Score = 28.9 bits (63), Expect = 7.6 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3 Query: 309 RTA*TKPKSNPSATLLPAHVLASVCTGERTAARAPVTAM 425 + A TKP S P+A PA + V T ++T R P AM Sbjct: 993 KPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAM 1031
>ORML3_BRARE (Q5XJR6) ORM1-like protein 3| Length = 153 Score = 28.5 bits (62), Expect = 9.9 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -2 Query: 97 FLNTVQAILFLYTQFYTKYDEV 32 FL IL+ T FYTKYD V Sbjct: 101 FLTITPIILYFLTSFYTKYDRV 122
>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)| Length = 701 Score = 28.5 bits (62), Expect = 9.9 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +3 Query: 300 SAIRTA*TKPKSNPSATLLPAHVLASVCTGERTAARAP 413 +A+ T T P P+ PA LAS T ERT + P Sbjct: 502 TAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVP 539
>CSTN1_DROME (Q9V498) Calsyntenin-1 precursor| Length = 978 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -3 Query: 207 SYH---RKNQTLDHSTCQLSHRLLLACNFHLLCRPGHIVIF 94 SYH R+N+TL T + CNFH+L +P H + F Sbjct: 45 SYHGLIRENETLVEITPLIKVNEEKICNFHILKKPYHEIPF 85
>RBSC_ECOLI (P0AGI1) Ribose transport system permease protein rbsC (EC| 3.6.3.17) Length = 321 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -2 Query: 460 LAKGKKWQVVLYIAVTGALAAVLSPVHTLARTCAGNSVALGLLLGFVYAVLMA 302 L G V +A+TGA+AA + + A ++ALG +G V V++A Sbjct: 68 LTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVA 120
>RBSC_ECOL6 (P0AGI2) Ribose transport system permease protein rbsC (EC| 3.6.3.17) Length = 321 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -2 Query: 460 LAKGKKWQVVLYIAVTGALAAVLSPVHTLARTCAGNSVALGLLLGFVYAVLMA 302 L G V +A+TGA+AA + + A ++ALG +G V V++A Sbjct: 68 LTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVA 120
>RBSC_ECO57 (P0AGI3) Ribose transport system permease protein rbsC (EC| 3.6.3.17) Length = 321 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -2 Query: 460 LAKGKKWQVVLYIAVTGALAAVLSPVHTLARTCAGNSVALGLLLGFVYAVLMA 302 L G V +A+TGA+AA + + A ++ALG +G V V++A Sbjct: 68 LTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVA 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,227,127 Number of Sequences: 219361 Number of extensions: 1202148 Number of successful extensions: 3399 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3309 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3399 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
