ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DMXL1_HUMAN (Q9Y485) Protein DmX-like 1 (X-like 1 protein) 29 2.8
2YRDR_BACSU (O07086) Hypothetical transport protein yrdR 29 3.7
3PLSL_MOUSE (Q61233) Plastin-2 (L-plastin) (Lymphocyte cytosolic ... 28 4.8
4DMXL1_MOUSE (Q6PNC0) Protein DmX-like 1 (X-like 1 protein) 28 6.3

>DMXL1_HUMAN (Q9Y485) Protein DmX-like 1 (X-like 1 protein)|
          Length = 3027

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 15   YLKYFFHGLRPHSAP*ANPTETARI*RSP-NEKKYCSIMLGG--TSEKPQNHTYT 170
            YL  F HGL  HS+      E  RI   P NEK + ++  GG     K Q H+ T
Sbjct: 2327 YLSLFIHGLATHSS-----NELFRIVAHPLNEKMWSAVFGGGAHVPSKEQTHSKT 2376



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>YRDR_BACSU (O07086) Hypothetical transport protein yrdR|
          Length = 321

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 187 KYVTISV*VWFCGFSEVPPNIMLQYFFSLGDR--HILAVSVGL 65
           KY  IS+ + F G S V     + +FFSLGD    IL + +G+
Sbjct: 128 KYTMISILIAFLGASMVITKGNISFFFSLGDHLFSILFIFIGV 170



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>PLSL_MOUSE (Q61233) Plastin-2 (L-plastin) (Lymphocyte cytosolic protein 1)|
           (LCP-1) (65 kDa macrophage protein) (pp65)
          Length = 627

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 9   DDYLKYFFHGLRPHSAP*ANPTETARI*RSPNEKKYCSIMLGGTSEKPQ---NHTYTEMV 179
           D+++K F HGL+         TE A+  R    KK     +GGTSE+      H+Y+E  
Sbjct: 72  DEFIKVF-HGLKS--------TEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEE 122

Query: 180 TY 185
            Y
Sbjct: 123 KY 124



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>DMXL1_MOUSE (Q6PNC0) Protein DmX-like 1 (X-like 1 protein)|
          Length = 3013

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 15   YLKYFFHGLRPHSAP*ANPTETARI*RSPNEKKYCSIMLGGTSEKP 152
            YL  F HGL  HS+      E  RI   P  +K  S + GG +  P
Sbjct: 2321 YLSLFIHGLATHSS-----NELFRIVAHPLNEKMWSAVFGGGAHVP 2361


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,086,335
Number of Sequences: 219361
Number of extensions: 609544
Number of successful extensions: 1248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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