ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC165176.2| Zea mays clone ZMMBBb-177G21, complete sequence 172 6e-40
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
3dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
4dbj|AK069993.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
5dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
6gb|BC042617.1| Homo sapiens hypothetical protein MGC34646, mRNA ... 44 0.39
7gb|AY094971.1| Homo sapiens cellular retinaldehyde-binding prote... 44 0.39
8gb|BC048992.1| Homo sapiens hypothetical protein MGC34646, mRNA ... 44 0.39
9emb|CR860488.1| Pongo pygmaeus mRNA; cDNA DKFZp469C2116 (from cl... 44 0.39
10emb|CR858372.1| Pongo pygmaeus mRNA; cDNA DKFZp459K2132 (from cl... 44 0.39
11dbj|AK125153.1| Homo sapiens cDNA FLJ43163 fis, clone FCBBF3000168 44 0.39
12dbj|AK094567.1| Homo sapiens cDNA FLJ37248 fis, clone BRAMY2006459 44 0.39
13dbj|AK096383.1| Homo sapiens cDNA FLJ39064 fis, clone NT2RP7014583 44 0.39
14gb|AF339775.1| Homo sapiens clone IMAGE:1338238, mRNA sequence 44 0.39
15gb|AC090094.5| Homo sapiens chromosome 8, clone RP11-252C19, com... 44 0.39
16ref|NM_173519.1| Homo sapiens hypothetical protein MGC34646 (MGC... 44 0.39
17gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 42 1.5
18gb|AC148936.3| Pan troglodytes BAC clone CH251-503L14 from Y, co... 42 1.5
19gb|AC146230.2| Pan troglodytes BAC clone CH251-228B19 from Y, co... 42 1.5
20gb|AC147123.2| Pan troglodytes BAC clone CH251-501L4 from Y, com... 42 1.5
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
22gb|AC145997.2| Pan troglodytes BAC clone RP43-41M5 from Y, compl... 42 1.5
23gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genom... 42 1.5
24emb|AL389924.17| Human DNA sequence from clone RP11-544N10 on ch... 42 1.5
25emb|CR628337.1| Legionella pneumophila str. Lens complete genome 42 1.5
26gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 1.5
27gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 42 1.5
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
29gb|AC006386.4|AC006386 Homo sapiens clone RP11-566H16, complete ... 42 1.5
30gb|AC016698.3|AC016698 Homo sapiens clone RP11-160O2, complete s... 42 1.5
31gb|AC010080.2|AC010080 Homo sapiens BAC clone RP11-5C5 from Y, c... 42 1.5
32ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 1.5
33emb|AL929020.10| Mouse DNA sequence from clone RP23-291L24 on ch... 42 1.5
34gb|AC005205.1|AC005205 Homo sapiens chromosome 19, cosmid F22105... 42 1.5
35gb|AF181666.1| Homo sapiens clone 173P17 polymorphic microsatell... 40 6.1
36emb|CT025708.8| Mouse DNA sequence from clone RP24-331C1 on chro... 40 6.1
37gb|AC107736.10| Mus musculus chromosome 7, clone RP23-354B2, com... 40 6.1
38emb|AL596220.9| Human DNA sequence from clone RP11-295K2 on chro... 40 6.1
39emb|AL603765.6| Human DNA sequence from clone RP11-351G1 on chro... 40 6.1
40emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chr... 40 6.1
41emb|AL645792.7| Zebrafish DNA sequence from clone RP71-1D10 in l... 40 6.1
42emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in ... 40 6.1
43gb|AC021237.5|AC021237 Homo sapiens chromosome 8, clone RP11-122... 40 6.1
44gb|AC021001.5|AC021001 Homo sapiens chromosome 8, clone RP11-419... 40 6.1
45gb|AC154599.2| Mus musculus BAC clone RP23-250J9 from chromosome... 40 6.1
46gb|AF172081.1|AF172081 Homo sapiens HPC1 locus clone 173P17 geno... 40 6.1
47emb|BX927146.27| Zebrafish DNA sequence from clone DKEY-277I15 i... 40 6.1
48gb|AC170901.3| Mus musculus BAC clone RP23-318L14 from chromosom... 40 6.1
49emb|AL929312.4| Mouse DNA sequence from clone RP23-463G15 on chr... 40 6.1
50emb|AL714007.10| Mouse DNA sequence from clone RP23-295M3 on chr... 40 6.1 
>gb|AC165176.2| Zea mays clone ZMMBBb-177G21, complete sequence
          Length = 176679

 Score =  172 bits (87), Expect = 6e-40
 Identities = 180/211 (85%)
 Strand = Plus / Minus

                                                                         
Query: 241   ttgaagttctcgagtagagctttgctagcaaggtctcgtttgaagaaggccccgaaaaac 300
             |||||||| ||||||||||| ||||| ||||||||||||  |||||||| |||| |||||
Sbjct: 96188 ttgaagttgtcgagtagagccttgctggcaaggtctcgtgagaagaaggtcccgtaaaac 96129

                                                                         
Query: 301   tcagacatcgtaaaactcctgtactttggcgggttttctggagaaaccagctctggtagc 360
             || ||||| || ||  |||||||||| |||||||| |||| ||| ||||||||||| |||
Sbjct: 96128 tcggacatggtgaagttcctgtacttgggcgggttctctgaagagaccagctctggcagc 96069

                                                                         
Query: 361   ggtccatagaaaaccgaatcccctcgcttcccaggattgaaaaagacggcgatcgaaact 420
             || |||||||| ||||| ||||||| |||||||||  |||| |||| | |||| ||||| 
Sbjct: 96068 ggcccatagaacaccgagtcccctctcttcccagggctgaagaagatgccgatggaaacc 96009

                                            
Query: 421   ctggcttcttcacgtgagttcatcaccaccc 451
             |||| ||||||||||| |||||| |||||||
Sbjct: 96008 ctgggttcttcacgtgtgttcatgaccaccc 95978
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  161 bits (81), Expect = 2e-36
 Identities = 165/193 (85%)
 Strand = Plus / Plus

                                                                           
Query: 240     tttgaagttctcgagtagagctttgctagcaaggtctcgtttgaagaaggccccgaaaaa 299
               |||||||| |||||  ||||||||||| |||||||||||||| ||||||||||| | |||
Sbjct: 8049499 tttgaagtgctcgatgagagctttgctcgcaaggtctcgtttaaagaaggcccccagaaa 8049558

                                                                           
Query: 300     ctcagacatcgtaaaactcctgtactttggcgggttttctggagaaaccagctctggtag 359
               ||||||||| |||||| ||||||||||||| |||||| | | ||||| ||| ||||| | 
Sbjct: 8049559 ctcagacatagtaaaattcctgtactttggtgggtttcccgaagaaatcagatctggcaa 8049618

                                                                           
Query: 360     cggtccatagaaaaccgaatcccctcgcttcccaggattgaaaaagacggcgatcgaaac 419
                |||||||| ||||| || || |||| ||| ||||||||| |||||| |||| | |||||
Sbjct: 8049619 tggtccataaaaaacagagtcgcctctcttgccaggattgtaaaagatggcgcttgaaac 8049678

                            
Query: 420     tctggcttcttca 432
               |||||||||||||
Sbjct: 8049679 tctggcttcttca 8049691



 Score =  159 bits (80), Expect = 1e-35
 Identities = 173/204 (84%)
 Strand = Plus / Plus

                                                                           
Query: 240     tttgaagttctcgagtagagctttgctagcaaggtctcgtttgaagaaggccccgaaaaa 299
               |||||||| |||||  ||||| ||||| ||||| |||||||| ||||||| ||| |||||
Sbjct: 8042857 tttgaagtgctcgataagagcattgctcgcaagctctcgtttaaagaaggtccccaaaaa 8042916

                                                                           
Query: 300     ctcagacatcgtaaaactcctgtactttggcgggttttctggagaaaccagctctggtag 359
               ||||| ||| |||||| ||||||||||||| |||||||| | ||||||||||||||| | 
Sbjct: 8042917 ctcaggcatagtaaaattcctgtactttggagggttttccgaagaaaccagctctggcaa 8042976

                                                                           
Query: 360     cggtccatagaaaaccgaatcccctcgcttcccaggattgaaaaagacggcgatcgaaac 419
                |||||||| ||||| || ||||||| ||| ||||||||| | |||| |||  | |||||
Sbjct: 8042977 tggtccataaaaaactgagtcccctctcttgccaggattgtagaagatggcacttgaaac 8043036

                                       
Query: 420     tctggcttcttcacgtgagttcat 443
               ||||||||||||| |||| |||||
Sbjct: 8043037 tctggcttcttcatgtgaattcat 8043060
to top
>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592E11
          Length = 153734

 Score =  161 bits (81), Expect = 2e-36
 Identities = 165/193 (85%)
 Strand = Plus / Plus

                                                                         
Query: 240   tttgaagttctcgagtagagctttgctagcaaggtctcgtttgaagaaggccccgaaaaa 299
             |||||||| |||||  ||||||||||| |||||||||||||| ||||||||||| | |||
Sbjct: 73268 tttgaagtgctcgatgagagctttgctcgcaaggtctcgtttaaagaaggcccccagaaa 73327

                                                                         
Query: 300   ctcagacatcgtaaaactcctgtactttggcgggttttctggagaaaccagctctggtag 359
             ||||||||| |||||| ||||||||||||| |||||| | | ||||| ||| ||||| | 
Sbjct: 73328 ctcagacatagtaaaattcctgtactttggtgggtttcccgaagaaatcagatctggcaa 73387

                                                                         
Query: 360   cggtccatagaaaaccgaatcccctcgcttcccaggattgaaaaagacggcgatcgaaac 419
              |||||||| ||||| || || |||| ||| ||||||||| |||||| |||| | |||||
Sbjct: 73388 tggtccataaaaaacagagtcgcctctcttgccaggattgtaaaagatggcgcttgaaac 73447

                          
Query: 420   tctggcttcttca 432
             |||||||||||||
Sbjct: 73448 tctggcttcttca 73460



 Score =  159 bits (80), Expect = 1e-35
 Identities = 173/204 (84%)
 Strand = Plus / Plus

                                                                         
Query: 240   tttgaagttctcgagtagagctttgctagcaaggtctcgtttgaagaaggccccgaaaaa 299
             |||||||| |||||  ||||| ||||| ||||| |||||||| ||||||| ||| |||||
Sbjct: 66626 tttgaagtgctcgataagagcattgctcgcaagctctcgtttaaagaaggtccccaaaaa 66685

                                                                         
Query: 300   ctcagacatcgtaaaactcctgtactttggcgggttttctggagaaaccagctctggtag 359
             ||||| ||| |||||| ||||||||||||| |||||||| | ||||||||||||||| | 
Sbjct: 66686 ctcaggcatagtaaaattcctgtactttggagggttttccgaagaaaccagctctggcaa 66745

                                                                         
Query: 360   cggtccatagaaaaccgaatcccctcgcttcccaggattgaaaaagacggcgatcgaaac 419
              |||||||| ||||| || ||||||| ||| ||||||||| | |||| |||  | |||||
Sbjct: 66746 tggtccataaaaaactgagtcccctctcttgccaggattgtagaagatggcacttgaaac 66805

                                     
Query: 420   tctggcttcttcacgtgagttcat 443
             ||||||||||||| |||| |||||
Sbjct: 66806 tctggcttcttcatgtgaattcat 66829
to top
>dbj|AK069993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E01, full
            insert sequence
          Length = 1387

 Score =  161 bits (81), Expect = 2e-36
 Identities = 165/193 (85%)
 Strand = Plus / Minus

                                                                        
Query: 240  tttgaagttctcgagtagagctttgctagcaaggtctcgtttgaagaaggccccgaaaaa 299
            |||||||| |||||  ||||||||||| |||||||||||||| ||||||||||| | |||
Sbjct: 1181 tttgaagtgctcgatgagagctttgctcgcaaggtctcgtttaaagaaggcccccagaaa 1122

                                                                        
Query: 300  ctcagacatcgtaaaactcctgtactttggcgggttttctggagaaaccagctctggtag 359
            ||||||||| |||||| ||||||||||||| |||||| | | ||||| ||| ||||| | 
Sbjct: 1121 ctcagacatagtaaaattcctgtactttggtgggtttcccgaagaaatcagatctggcaa 1062

                                                                        
Query: 360  cggtccatagaaaaccgaatcccctcgcttcccaggattgaaaaagacggcgatcgaaac 419
             |||||||| ||||| || || |||| ||| ||||||||| |||||| |||| | |||||
Sbjct: 1061 tggtccataaaaaacagagtcgcctctcttgccaggattgtaaaagatggcgcttgaaac 1002

                         
Query: 420  tctggcttcttca 432
            |||||||||||||
Sbjct: 1001 tctggcttcttca 989
to top
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0046H10
          Length = 155544

 Score =  159 bits (80), Expect = 1e-35
 Identities = 173/204 (84%)
 Strand = Plus / Plus

                                                                          
Query: 240    tttgaagttctcgagtagagctttgctagcaaggtctcgtttgaagaaggccccgaaaaa 299
              |||||||| |||||  ||||| ||||| ||||| |||||||| ||||||| ||| |||||
Sbjct: 150375 tttgaagtgctcgataagagcattgctcgcaagctctcgtttaaagaaggtccccaaaaa 150434

                                                                          
Query: 300    ctcagacatcgtaaaactcctgtactttggcgggttttctggagaaaccagctctggtag 359
              ||||| ||| |||||| ||||||||||||| |||||||| | ||||||||||||||| | 
Sbjct: 150435 ctcaggcatagtaaaattcctgtactttggagggttttccgaagaaaccagctctggcaa 150494

                                                                          
Query: 360    cggtccatagaaaaccgaatcccctcgcttcccaggattgaaaaagacggcgatcgaaac 419
               |||||||| ||||| || ||||||| ||| ||||||||| | |||| |||  | |||||
Sbjct: 150495 tggtccataaaaaactgagtcccctctcttgccaggattgtagaagatggcacttgaaac 150554

                                      
Query: 420    tctggcttcttcacgtgagttcat 443
              ||||||||||||| |||| |||||
Sbjct: 150555 tctggcttcttcatgtgaattcat 150578
to top
>gb|BC042617.1| Homo sapiens hypothetical protein MGC34646, mRNA (cDNA clone
            MGC:34646 IMAGE:5192332), complete cds
          Length = 3549

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 3332 ttgcatacacataaattcaaac 3311
to top
>gb|AY094971.1| Homo sapiens cellular retinaldehyde-binding protein-like protein
            mRNA, complete cds
          Length = 3430

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 3315 ttgcatacacataaattcaaac 3294
to top
>gb|BC048992.1| Homo sapiens hypothetical protein MGC34646, mRNA (cDNA clone
            IMAGE:5284856), containing frame-shift errors
          Length = 2893

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 2748 ttgcatacacataaattcaaac 2727
to top
>emb|CR860488.1| Pongo pygmaeus mRNA; cDNA DKFZp469C2116 (from clone DKFZp469C2116)
          Length = 4560

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 4262 ttgcatacacataaattcaaac 4283
to top
>emb|CR858372.1| Pongo pygmaeus mRNA; cDNA DKFZp459K2132 (from clone DKFZp459K2132)
          Length = 3588

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 3463 ttgcatacacataaattcaaac 3442
to top
>dbj|AK125153.1| Homo sapiens cDNA FLJ43163 fis, clone FCBBF3000168
          Length = 2717

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 2609 ttgcatacacataaattcaaac 2588
to top
>dbj|AK094567.1| Homo sapiens cDNA FLJ37248 fis, clone BRAMY2006459
          Length = 3406

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 3276 ttgcatacacataaattcaaac 3255
to top
>dbj|AK096383.1| Homo sapiens cDNA FLJ39064 fis, clone NT2RP7014583
          Length = 1999

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 1042 ttgcatacacataaattcaaac 1063
to top
>gb|AF339775.1| Homo sapiens clone IMAGE:1338238, mRNA sequence
          Length = 2069

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 1062 ttgcatacacataaattcaaac 1083
to top
>gb|AC090094.5| Homo sapiens chromosome 8, clone RP11-252C19, complete sequence
          Length = 158404

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 187    ttgcatacacataaattcaaac 208
              ||||||||||||||||||||||
Sbjct: 112981 ttgcatacacataaattcaaac 113002
to top
>ref|NM_173519.1| Homo sapiens hypothetical protein MGC34646 (MGC34646), mRNA
          Length = 3549

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 187  ttgcatacacataaattcaaac 208
            ||||||||||||||||||||||
Sbjct: 3332 ttgcatacacataaattcaaac 3311
to top
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
              genome
          Length = 3397754

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 18     ttgaaatattttttcaatggcttga 42
              |||||||||||||||||||| ||||
Sbjct: 208746 ttgaaatattttttcaatggtttga 208770
to top
>gb|AC148936.3| Pan troglodytes BAC clone CH251-503L14 from Y, complete sequence
          Length = 205879

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   tttgatgacgtttgaaccatt 233
             |||||||||||||||||||||
Sbjct: 73620 tttgatgacgtttgaaccatt 73600
to top
>gb|AC146230.2| Pan troglodytes BAC clone CH251-228B19 from Y, complete sequence
          Length = 179896

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   tttgatgacgtttgaaccatt 233
             |||||||||||||||||||||
Sbjct: 85941 tttgatgacgtttgaaccatt 85921
to top
>gb|AC147123.2| Pan troglodytes BAC clone CH251-501L4 from Y, complete sequence
          Length = 212773

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 213    tttgatgacgtttgaaccatt 233
              |||||||||||||||||||||
Sbjct: 179520 tttgatgacgtttgaaccatt 179540
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 186      tttgcatacacataaattcaa 206
                |||||||||||||||||||||
Sbjct: 15455877 tttgcatacacataaattcaa 15455857
to top
>gb|AC145997.2| Pan troglodytes BAC clone RP43-41M5 from Y, complete sequence
          Length = 194981

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 213    tttgatgacgtttgaaccatt 233
              |||||||||||||||||||||
Sbjct: 121366 tttgatgacgtttgaaccatt 121386
to top
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
             sequence
          Length = 164705

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 186   tttgcatacacataaattcaa 206
             |||||||||||||||||||||
Sbjct: 45649 tttgcatacacataaattcaa 45669
to top
>emb|AL389924.17| Human DNA sequence from clone RP11-544N10 on chromosome 9 Contains a
             arachidonate 15-lipoxygenase (ALOX15) pseudogene and the
             5' end of the FGD3 gene for FGD1 family, member 3
             (FLJ00004), complete sequence
          Length = 72402

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    gattacttgaaatattttttc 32
             |||||||||||||||||||||
Sbjct: 19118 gattacttgaaatattttttc 19138
to top
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 18     ttgaaatattttttcaatggcttga 42
              |||||||||||||||||||| ||||
Sbjct: 267534 ttgaaatattttttcaatggtttga 267558
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 213      tttgatgacgtttgaaccatt 233
                |||||||||||||||||||||
Sbjct: 10947751 tttgatgacgtttgaaccatt 10947771



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 213     tttgatgacgtttgaaccatt 233
               |||||||||||||||||||||
Sbjct: 2979627 tttgatgacgtttgaaccatt 2979647
to top
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 279    tttgaagaaggccccgaaaaa 299
              |||||||||||||||||||||
Sbjct: 704854 tttgaagaaggccccgaaaaa 704874
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 186      tttgcatacacataaattcaa 206
                |||||||||||||||||||||
Sbjct: 15450411 tttgcatacacataaattcaa 15450391
to top
>gb|AC006386.4|AC006386 Homo sapiens clone RP11-566H16, complete sequence
          Length = 164229

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   tttgatgacgtttgaaccatt 233
             |||||||||||||||||||||
Sbjct: 38777 tttgatgacgtttgaaccatt 38757
to top
>gb|AC016698.3|AC016698 Homo sapiens clone RP11-160O2, complete sequence
          Length = 154286

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 213   tttgatgacgtttgaaccatt 233
             |||||||||||||||||||||
Sbjct: 68965 tttgatgacgtttgaaccatt 68985
to top
>gb|AC010080.2|AC010080 Homo sapiens BAC clone RP11-5C5 from Y, complete sequence
          Length = 156956

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 213    tttgatgacgtttgaaccatt 233
              |||||||||||||||||||||
Sbjct: 153853 tttgatgacgtttgaaccatt 153873
to top
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 213     tttgatgacgtttgaaccatt 233
               |||||||||||||||||||||
Sbjct: 3397099 tttgatgacgtttgaaccatt 3397079



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 213     tttgatgacgtttgaaccatt 233
               |||||||||||||||||||||
Sbjct: 2651237 tttgatgacgtttgaaccatt 2651257



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 213     tttgatgacgtttgaaccatt 233
               |||||||||||||||||||||
Sbjct: 1017489 tttgatgacgtttgaaccatt 1017509
to top
>emb|AL929020.10| Mouse DNA sequence from clone RP23-291L24 on chromosome 2, complete
              sequence
          Length = 158398

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 421    ctggcttcttcacgtgagttc 441
              |||||||||||||||||||||
Sbjct: 128380 ctggcttcttcacgtgagttc 128360
to top
>gb|AC005205.1|AC005205 Homo sapiens chromosome 19, cosmid F22105, complete sequence
          Length = 33927

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 15   tacttgaaatattttttcaat 35
            |||||||||||||||||||||
Sbjct: 8749 tacttgaaatattttttcaat 8769
to top
>gb|AF181666.1| Homo sapiens clone 173P17 polymorphic microsatellite sequence
          Length = 5435

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   tgaaatattttttcaatggc 38
            ||||||||||||||||||||
Sbjct: 3562 tgaaatattttttcaatggc 3581
to top
>emb|CT025708.8| Mouse DNA sequence from clone RP24-331C1 on chromosome 17, complete
              sequence
          Length = 205598

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     aaatattttttcaatggctt 40
              ||||||||||||||||||||
Sbjct: 102188 aaatattttttcaatggctt 102169
to top
>gb|AC107736.10| Mus musculus chromosome 7, clone RP23-354B2, complete sequence
          Length = 272413

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    ttacttgaaatattttttcaatgg 37
             |||||||||||||||||| |||||
Sbjct: 49176 ttacttgaaatatttttttaatgg 49199
to top
>emb|AL596220.9| Human DNA sequence from clone RP11-295K2 on chromosome 1 Contains the
             5' end of the TPR gene for translocated promoter region
             (to activated MET oncogene), a novel gene, the 3' end of
             the PDC gene for phosducin and a novel gene, complete
             sequence
          Length = 130266

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tgaaatattttttcaatggc 38
             ||||||||||||||||||||
Sbjct: 57901 tgaaatattttttcaatggc 57882
to top
>emb|AL603765.6| Human DNA sequence from clone RP11-351G1 on chromosome 1, complete
              sequence
          Length = 157497

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    agaaaccacagaaccacact 164
              ||||||||||||||||||||
Sbjct: 135862 agaaaccacagaaccacact 135843
to top
>emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chromosome Xq13.2-21.2
             Contains the 5' end of a novel gene, complete sequence
          Length = 94056

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    attacttgaaatattttttc 32
             ||||||||||||||||||||
Sbjct: 21641 attacttgaaatattttttc 21660
to top
>emb|AL645792.7| Zebrafish DNA sequence from clone RP71-1D10 in linkage group 14
             Contains two novel genes similar to MATR3 (matrin 3), a
             novel gene similar to PDE6A (cGMP-specific
             phosphodiesterase 6A alpha (rod)), a novel gene similar to
             PERC (PGC-1-related estrogen receptor alpha coactivator)
             and two CpG islands, complete sequence
          Length = 170221

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    aatattttttcaatggcttg 41
             ||||||||||||||||||||
Sbjct: 56361 aatattttttcaatggcttg 56342
to top
>emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in linkage group 11,
              complete sequence
          Length = 230487

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 102    aatgagaaaaaatactgtagcatt 125
              ||||| ||||||||||||||||||
Sbjct: 224486 aatgaaaaaaaatactgtagcatt 224463
to top
>gb|AC021237.5|AC021237 Homo sapiens chromosome 8, clone RP11-122A21, complete sequence
          Length = 175973

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 192   tacacataaattcaaacattgttt 215
             ||||| ||||||||||||||||||
Sbjct: 18860 tacacttaaattcaaacattgttt 18837
to top
>gb|AC021001.5|AC021001 Homo sapiens chromosome 8, clone RP11-419L20, complete sequence
          Length = 175742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 192    tacacataaattcaaacattgttt 215
              ||||| ||||||||||||||||||
Sbjct: 170093 tacacttaaattcaaacattgttt 170070
to top
>gb|AC154599.2| Mus musculus BAC clone RP23-250J9 from chromosome 17, complete sequence
          Length = 141431

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    aaatattttttcaatggctt 40
             ||||||||||||||||||||
Sbjct: 26954 aaatattttttcaatggctt 26935
to top
>gb|AF172081.1|AF172081 Homo sapiens HPC1 locus clone 173P17 genomic sequence
          Length = 36853

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tgaaatattttttcaatggc 38
             ||||||||||||||||||||
Sbjct: 20858 tgaaatattttttcaatggc 20839
to top
>emb|BX927146.27| Zebrafish DNA sequence from clone DKEY-277I15 in linkage group 22,
             complete sequence
          Length = 70937

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   cattttacaatttgaagttc 249
             ||||||||||||||||||||
Sbjct: 41765 cattttacaatttgaagttc 41784
to top
>gb|AC170901.3| Mus musculus BAC clone RP23-318L14 from chromosome 17, complete sequence
          Length = 207623

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     aaatattttttcaatggctt 40
              ||||||||||||||||||||
Sbjct: 193648 aaatattttttcaatggctt 193667
to top
>emb|AL929312.4| Mouse DNA sequence from clone RP23-463G15 on chromosome 2, complete
              sequence
          Length = 165121

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     tgaaatattttttcaatggcttga 42
              ||||||||||||||| ||||||||
Sbjct: 135979 tgaaatattttttcattggcttga 135956
to top
>emb|AL714007.10| Mouse DNA sequence from clone RP23-295M3 on chromosome X, complete
              sequence
          Length = 146552

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     tcacccaatgagaaaaaata 115
              ||||||||||||||||||||
Sbjct: 119117 tcacccaatgagaaaaaata 119136


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,816,848
Number of Sequences: 3902068
Number of extensions: 4816848
Number of successful extensions: 94131
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93856
Number of HSP's gapped (non-prelim): 275
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top