>VCAM1_RAT (P29534) Vascular cell adhesion protein 1 precursor (V-CAM 1)|
          Length = 739

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 171 LFQHVGLGHGDMVLVRCYC*SVPECWILL 85
           +F    +  GD V++ C C SVPE WI+L
Sbjct: 607 VFPSKSVKEGDTVIISCTCGSVPEIWIIL 635

>VCAM1_MOUSE (P29533) Vascular cell adhesion protein 1 precursor (V-CAM 1)|
          Length = 739

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 210 LVMAVNLYHSVCNLFQHVGLGHGDMVLVRCYC*SVPECWILL 85
           L++ V+       +F    +  GD V++ C C +VPE WI+L
Sbjct: 594 LIIQVSPKDIQLTVFPSKSVKEGDTVIISCTCGNVPETWIIL 635

>CHEB1_PSEPU (O52262) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 374

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 33  RTNRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQVQRA 164
           R+NRRL  +      A PV +S+P P ++ + PAP       RA
Sbjct: 131 RSNRRLGSYARPAPVAAPVPASSPAPASSFASPAPARPAATARA 174

>VCAM1_HUMAN (P19320) Vascular cell adhesion protein 1 precursor (V-CAM 1)|
           (CD106 antigen) (INCAM-100)
          Length = 739

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 168 FQHVGLGHGDMVLVRCYC*SVPECWILL 85
           F    +  GD V++ C C +VPE WI+L
Sbjct: 608 FPSESVKEGDTVIISCTCGNVPETWIIL 635

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +3

Query: 6   RQQLNYSPKRTNRRLNKWETRPHSATP-----VISSTPGPTNNNSEPAPYPHVQVQRAGT 170
           R+  + SP+R +  + +   R HS +P       S+TP P    + P P P V+ +    
Sbjct: 174 RKSRSPSPRRRSSPIRRERKRSHSRSPHHRTKSRSATPAPEKKEATPEPEPSVKPKETVV 233

Query: 171 NYILNDTDL 197
               +++D+
Sbjct: 234 QEATSNSDI 242

>LEU2_GLUOX (Q5FUG3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 475

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 57  WETRPHSATPVISSTPGPTNNNSEPAPYPHVQVQRA 164
           W T P +  P+  S P P++   EP P    Q+QRA
Sbjct: 295 WGTSPQNVLPIDGSVPSPSD---EPDPARAAQIQRA 327

>VCAM1_CANFA (Q28260) Vascular cell adhesion protein 1 precursor (V-CAM 1)|
          Length = 739

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 168 FQHVGLGHGDMVLVRCYC*SVPECWILL 85
           F    +  GD V++ C C +VP+ WI+L
Sbjct: 608 FPSESVKEGDTVIISCTCGNVPKTWIIL 635

>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9|
          Length = 531

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 6   RQQLNYSPKRTNRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYP 143
           R Q   +P+  +   ++WET+  +A+P    TP PT+  + P   P
Sbjct: 351 RPQAKAAPRAYSDHDDRWETKEGAASPA-PETPQPTSPETSPKETP 395

>YZLL_CAEEL (Q93847) Hypothetical WD-repeat protein K04G11.4|
          Length = 395

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 75  SATPVISSTPGPTNNNSEPAPYPHVQVQRAGTNYIL 182
           ++TP++SSTPGP + +S P P P+         Y L
Sbjct: 64  ASTPMLSSTPGP-SYSSAPTPMPNPSAANLWPTYKL 98

>MEF2C_MOUSE (Q8CFN5) Myocyte-specific enhancer factor 2C|
          Length = 474

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 39  NRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQVQRAGTNYILNDTDL 197
           N+R+N  ++    ATPV+ S   PT        YP       GT Y L+  DL
Sbjct: 279 NQRINNSQSAQSLATPVV-SVATPTLPGQGMGGYPSAISTTYGTEYSLSSADL 330

>MEF2C_HUMAN (Q06413) Myocyte-specific enhancer factor 2C|
          Length = 473

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 39  NRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQVQRAGTNYILNDTDL 197
           N+R+N  ++    ATPV+ S   PT        YP       GT Y L+  DL
Sbjct: 279 NQRINNSQSAQSLATPVV-SVATPTLPGQGMGGYPSAISTTYGTEYSLSSADL 330

>IF2_PROMP (Q7UZZ9) Translation initiation factor IF-2|
          Length = 1169

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
 Frame = +3

Query: 27  PKRTNRRLNKWETRPHSATPVISSTPGPTNN----NSEPAPYPHVQVQRAGTNY 176
           PK    R N    +P S T + ++ PG  N     N E  PY      R GT Y
Sbjct: 262 PKINTNRPNSNSRQPSSNTQISANRPGGQNRQGVPNREGGPYRQGSPNRPGTPY 315

>GP1BA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precursor|
           (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA)
           (GPIb-alpha) (Antigen CD42b-alpha) (CD42b antigen)
           [Contains: Glycocalicin]
          Length = 626

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 6   RQQLNYSPKRTNRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYP 143
           ++Q  + P+ T       E+   S TP  ++ P P+   SEP P P
Sbjct: 350 KEQTTFPPRWTPNFTLHMESITFSKTPKSTTEPTPSPTTSEPVPEP 395

>BUB1B_HUMAN (O60566) Mitotic checkpoint serine/threonine-protein kinase BUB1|
           beta (EC 2.7.11.1) (hBUBR1) (MAD3/BUB1-related protein
           kinase) (Mitotic checkpoint kinase MAD3L) (SSK1)
          Length = 1050

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = +3

Query: 12  QLNYSPKRTNRRLNKWETRPHSATPVISST------PGPTNNNSEPAPYPHVQVQR 161
           Q+N   + T+   N W+ +PHS  P +  +           N S PA  P V  QR
Sbjct: 500 QVNCCARETSLAENIWQEQPHSKGPSVPFSIFDEFLLSEKKNKSPPADPPRVLAQR 555

>CORT_MOUSE (P56469) Cortistatin precursor [Contains: Cortistatin-14]|
          Length = 109

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 51  NKWETRPHSATPVISSTPGPTNNNSEPAPY--PHV 149
           ++W ++  S+TPV   TPG + +   P P   PH+
Sbjct: 58  HEWASQASSSTPVGGGTPGLSKSQERPPPQQPPHL 92

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 9   QQLNYSPKRTNRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQVQRAGTN 173
           +Q   + +R N R N  + RP+++ PV        N  +  AP PH Q  R G N
Sbjct: 143 RQSRPNDRRNNDRRNN-QGRPNNSQPVQHQN----NRGNASAPRPHAQGPRPGNN 192

>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6684

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -2

Query: 189  YHSVCNLFQHVGLGHGDMVLVRCYC*SVPECWI 91
            +H VCN+ ++  +  GD ++ RC   ++ +C++
Sbjct: 5782 HHEVCNIHRNEHVASGDAIMTRCL--AIHDCFV 5812

>R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; 3C-like
            proteinase (EC 3.4
          Length = 6758

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -2

Query: 189  YHSVCNLFQHVGLGHGDMVLVRCYC*SVPECWI 91
            +H++CN+ ++  +  GD ++ RC   +V +C++
Sbjct: 5848 HHAICNVHRNEHVASGDAIMTRCL--AVYDCFV 5878

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 45  RLNKWETRPHSATPVISSTPGPTNNNSEPAP 137
           R++ WE  P  A    SS P P   N  P P
Sbjct: 346 RVSPWELEPLVANSTPSSQPQPPQRNKRPRP 376

>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 69   PHSATPVISSTPGPTNNNSEPAPYPHVQVQRAGTNYILNDT 191
            P   T   S TP PT + + P P P        T+ I + T
Sbjct: 1467 PSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTTSPITSPT 1507

>LRP1_HHV1F (P17588) Latency-related protein 1|
          Length = 340

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 63  TRPHSATPVISSTPGPTNNNSEPAPYP 143
           T PHS  P +  TP P++ +S   P P
Sbjct: 30  THPHSHAPPLPRTPTPSHPHSRAPPLP 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,423,306
Number of Sequences: 219361
Number of extensions: 822245
Number of successful extensions: 2833
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2825
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)