Clone Name | rbart17f08 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197219.1| Oryza sativa (japonica cultivar-group) putative steroid membrane binding protein (OSJNBb0073N24.4), mRNA Length = 909 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 263 tccttctcttttacctcctccgagctcacctccctcggctt 303 ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 650 tccttttcttttacttcctccgagcttacctccctcggctt 610
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 263 tccttctcttttacctcctccgagctcacctccctcggctt 303 ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 16513 tccttttcttttacttcctccgagcttacctccctcggctt 16553
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 263 tccttctcttttacctcctccgagctcacctccctcggctt 303 ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 18655235 tccttttcttttacttcctccgagcttacctccctcggctt 18655275
>dbj|AK105774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F02, full insert sequence Length = 985 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 263 tccttctcttttacctcctccgagctcacctccctcggctt 303 ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 728 tccttttcttttacttcctccgagcttacctccctcggctt 688
>dbj|AK072008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K01, full insert sequence Length = 2077 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 263 tccttctcttttacctcctccgagctcacctccctcggctt 303 ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 2040 tccttttcttttacttcctccgagcttacctccctcggctt 2000
>dbj|AK069511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019P08, full insert sequence Length = 1030 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 263 tccttctcttttacctcctccgagctcacctccctcggctt 303 ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 773 tccttttcttttacttcctccgagcttacctccctcggctt 733
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 263 tccttctcttttacctcctccgagctcacctccctcggctt 303 ||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 18666088 tccttttcttttacttcctccgagcttacctccctcggctt 18666128
>gb|AC013391.12| Homo sapiens chromosome 15, clone RP11-429B14, complete sequence Length = 210797 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 tccttctcttttacctcctcc 283 ||||||||||||||||||||| Sbjct: 111084 tccttctcttttacctcctcc 111064
>gb|AC116766.9| Mus musculus chromosome 18, clone RP23-395B17, complete sequence Length = 207631 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 tccttctcttttacctcctcc 283 ||||||||||||||||||||| Sbjct: 141735 tccttctcttttacctcctcc 141715
>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence Length = 137979 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 caacagacgacttaacaaatg 58 ||||||||||||||||||||| Sbjct: 42681 caacagacgacttaacaaatg 42701
>gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosome 16, complete sequence Length = 165496 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 ctgcatcagctgcggcttcct 266 ||||||||||||||||||||| Sbjct: 149943 ctgcatcagctgcggcttcct 149963
>gb|AF284446.1|AF284446 Homo sapiens tumor-related protein DRC2 (DRC2) gene, complete cds Length = 25172 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 tccttctcttttacctcctcc 283 ||||||||||||||||||||| Sbjct: 15677 tccttctcttttacctcctcc 15657
>dbj|AP003154.2| Mus musculus genomic DN, chromosome 16 clone:RP21-564B5, complete sequence Length = 111402 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 ctgcatcagctgcggcttcct 266 ||||||||||||||||||||| Sbjct: 61511 ctgcatcagctgcggcttcct 61491
>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete sequence Length = 175731 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 cagcagctaaattattcacccaaaa 33 |||||||||||||||||| |||||| Sbjct: 84302 cagcagctaaattattcatccaaaa 84278
>emb|CT030190.9| Mouse DNA sequence from clone RP23-115D20 on chromosome 16, complete sequence Length = 228196 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 ctgcatcagctgcggcttcct 266 ||||||||||||||||||||| Sbjct: 184045 ctgcatcagctgcggcttcct 184025
>ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reductase AT1G76470 mRNA, complete cds Length = 983 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cttccttctcttttacctcc 280 |||||||||||||||||||| Sbjct: 864 cttccttctcttttacctcc 845
>ref|NM_103819.1| Arabidopsis thaliana unknown protein AT1G49290 mRNA, complete cds Length = 1017 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cttccttctcttttacctcc 280 |||||||||||||||||||| Sbjct: 703 cttccttctcttttacctcc 684
>gb|AC160552.13| Mus musculus chromosome 3, clone RP23-326D6, complete sequence Length = 210051 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 catcagctgcggcttccttctctt 272 |||||||||| ||||||||||||| Sbjct: 109167 catcagctgctgcttccttctctt 109190
>ref|NM_029070.1| Mus musculus RIKEN cDNA 4930511J11 gene (4930511J11Rik), mRNA Length = 1407 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cctcctccgagctcacctcc 295 |||||||||||||||||||| Sbjct: 866 cctcctccgagctcacctcc 885
>emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 in linkage group 9, complete sequence Length = 218171 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ttccttctcttttacctcct 281 |||||||||||||||||||| Sbjct: 174362 ttccttctcttttacctcct 174381
>gb|DQ459168.1| Arabidopsis thaliana unknown (At1g49290) gene, complete cds Length = 1017 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cttccttctcttttacctcc 280 |||||||||||||||||||| Sbjct: 703 cttccttctcttttacctcc 684
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence Length = 125021 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cttccttctcttttacctcc 280 |||||||||||||||||||| Sbjct: 110987 cttccttctcttttacctcc 110968
>gb|AC123851.4| Mus musculus BAC clone RP23-323K4 from chromosome 16, complete sequence Length = 230221 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cctcctccgagctcacctcc 295 |||||||||||||||||||| Sbjct: 168533 cctcctccgagctcacctcc 168552
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gctgcggcttccttctcttt 273 |||||||||||||||||||| Sbjct: 477500 gctgcggcttccttctcttt 477481
>gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete sequence Length = 100806 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cttccttctcttttacctcc 280 |||||||||||||||||||| Sbjct: 26376 cttccttctcttttacctcc 26395
>dbj|AK015757.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930511J11 product:hypothetical PMP-22/EMP/MP20 and claudin family containing protein, full insert sequence Length = 1407 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cctcctccgagctcacctcc 295 |||||||||||||||||||| Sbjct: 866 cctcctccgagctcacctcc 885
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gtccaagtccaacgtgctgg 166 |||||||||||||||||||| Sbjct: 1683155 gtccaagtccaacgtgctgg 1683174
>gb|AC154651.2| Mus musculus BAC clone RP24-261K2 from chromosome 9, complete sequence Length = 173354 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 aatgatacagatttactgcc 202 |||||||||||||||||||| Sbjct: 81735 aatgatacagatttactgcc 81754
>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete sequence Length = 94487 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cttccttctcttttacctcc 280 |||||||||||||||||||| Sbjct: 15387 cttccttctcttttacctcc 15368
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gtccaagtccaacgtgctgg 166 |||||||||||||||||||| Sbjct: 82655 gtccaagtccaacgtgctgg 82674
>gb|BC027071.1| Mus musculus RIKEN cDNA 4930511J11 gene, mRNA (cDNA clone MGC:38714 IMAGE:5357758), complete cds Length = 1393 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 cctcctccgagctcacctcc 295 |||||||||||||||||||| Sbjct: 838 cctcctccgagctcacctcc 857 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,424,358 Number of Sequences: 3902068 Number of extensions: 2424358 Number of successful extensions: 43920 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43817 Number of HSP's gapped (non-prelim): 103 length of query: 307 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 285 effective length of database: 17,147,199,772 effective search space: 4886951935020 effective search space used: 4886951935020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)