ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z81063.1|CEF15D3 Caenorhabditis elegans Cosmid F15D3, comple... 42 0.48
2ref|XM_722291.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 0.48
3emb|AL589923.11| Human DNA sequence from clone RP11-374O2 on chr... 42 0.48
4emb|AL592406.4| Human DNA sequence from clone RP11-322F10 on chr... 40 1.9
5emb|AL034555.2|HS134O19 Human DNA sequence from clone RP1-134O19... 40 1.9
6gb|AC109458.3| Homo sapiens chromosome 5 clone RP11-257I8, compl... 40 1.9
7gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, compl... 40 1.9
8dbj|AB009053.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 1.9
9gb|AC115820.11| Mus musculus chromosome 8, clone RP23-479K9, com... 40 1.9
10gb|AC134841.4| Mus musculus BAC clone RP24-372K3 from 5, complet... 40 1.9
11gb|AC134584.5| Mus musculus BAC clone RP23-299M6 from 5, complet... 40 1.9
12gb|AC153526.13| Mus musculus 10 BAC RP23-383C2 (Roswell Park Can... 38 7.5
13gb|AC102119.10| Mus musculus chromosome 19, clone RP23-173J6, co... 38 7.5
14gb|AC165239.3| Mus musculus chromosome 19, clone RP24-73C2, comp... 38 7.5
15emb|AL935124.31| Mouse DNA sequence from clone RP23-88C15 on chr... 38 7.5
16emb|CR956619.7| M.truncatula DNA sequence from clone MTH2-65F22 ... 38 7.5
17gb|AC131652.2| Mus musculus BAC clone RP23-216A20 from 16, compl... 38 7.5
18gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, co... 38 7.5
19gb|DQ148139.1| Macaca mulatta clone ss1_b16_t7_351 mitogen-activ... 38 7.5
20gb|AY349859.1| Drosophila simulans strain Sim6 Sr-CII gene, part... 38 7.5
21emb|AL389888.8| Human DNA sequence from clone RP11-389K14 on chr... 38 7.5
22gb|AF370174.1| Arabidopsis thaliana unknown protein (At5g62900) ... 38 7.5
23dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone:... 38 7.5
24gb|AC117535.2| Homo sapiens chromosome 5 clone RP11-937M12, comp... 38 7.5
25gb|AC008861.6| Homo sapiens chromosome 5 clone CTD-2185C4, compl... 38 7.5
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.5
27gb|AY865056.1| Drosophila simulans strain Zs24 SR-CII gene, comp... 38 7.5
28gb|AY865053.1| Drosophila simulans strain Zs15 SR-CII gene, comp... 38 7.5
29gb|AY865052.1| Drosophila simulans strain Zs9 SR-CII gene, compl... 38 7.5
30gb|AY865051.1| Drosophila simulans strain Zs7 SR-CII gene, compl... 38 7.5
31gb|AY865048.1| Drosophila simulans strain Bs8 SR-CII gene, compl... 38 7.5
32gb|AY865046.1| Drosophila simulans strain Bs6 SR-CII gene, compl... 38 7.5
33gb|AC122136.4| Homo sapiens BAC clone RP11-609F13 from 2, comple... 38 7.5
34gb|AC157494.2| Mus musculus BAC clone RP23-2F1 from chromosome 1... 38 7.5
35gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosom... 38 7.5
36gb|AC010207.18| Homo sapiens 3 BAC RP11-375I20 (Roswell Park Can... 38 7.5
37dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.5
38dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.5
39gb|AC156025.2| Mus musculus BAC clone RP23-71L21 from 14, comple... 38 7.5
40emb|AL161662.6|CNS01RH6 Human chromosome 14 DNA sequence BAC R-4... 38 7.5
41gb|AC154565.2| Mus musculus BAC clone RP23-403J19 from chromosom... 38 7.5
42dbj|AP001924.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 7.5
43gb|AC106797.2| Homo sapiens chromosome 5 clone RP11-433I2, compl... 38 7.5
44gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromoso... 38 7.5 
>emb|Z81063.1|CEF15D3 Caenorhabditis elegans Cosmid F15D3, complete sequence
          Length = 42660

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1    atcaaaatcgctcaaaacatg 21
            |||||||||||||||||||||
Sbjct: 1189 atcaaaatcgctcaaaacatg 1209
to top
>ref|XM_722291.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06690)
            partial mRNA
          Length = 3363

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 56   aaaaataacattgattcccca 76
            |||||||||||||||||||||
Sbjct: 2839 aaaaataacattgattcccca 2859
to top
>emb|AL589923.11| Human DNA sequence from clone RP11-374O2 on chromosome 9 Contains part
             of a novel gene, complete sequence
          Length = 104685

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 14    aaaacatgactgacaaaattcaaca 38
             |||||||| ||||||||||||||||
Sbjct: 32526 aaaacatgtctgacaaaattcaaca 32502
to top
>emb|AL592406.4| Human DNA sequence from clone RP11-322F10 on chromosome 1 Contains the
             3' end of a histone deacetylase 1 (HDAC1) pseudogene, the
             3' end of the MARK1 gene for MAP/microtubule
             affinity-regulating kinase, a novel gene, a novel gene
             (FLJ14146) and a CpG island, complete sequence
          Length = 121601

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ctagctgcaaaaataacatt 67
             ||||||||||||||||||||
Sbjct: 49759 ctagctgcaaaaataacatt 49740
to top
>emb|AL034555.2|HS134O19 Human DNA sequence from clone RP1-134O19 on chromosome 1p36.11-36.33
             Contains the 3' end of the gene for SMART/HDAC1 associated
             repressor protein (SHARP), the 3' end of the ZNF151 gene
             for zinc finger protein 151 (pHZ-67) and a CpG island,
             complete sequence
          Length = 86897

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   atgacaaaagtttcttcttc 148
             ||||||||||||||||||||
Sbjct: 76412 atgacaaaagtttcttcttc 76431
to top
>gb|AC109458.3| Homo sapiens chromosome 5 clone RP11-257I8, complete sequence
          Length = 162191

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     actgacaaaattcaacatat 41
              ||||||||||||||||||||
Sbjct: 141148 actgacaaaattcaacatat 141167
to top
>gb|AC110009.3| Homo sapiens chromosome 5 clone RP11-508M8, complete sequence
          Length = 137632

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     actgacaaaattcaacatat 41
              ||||||||||||||||||||
Sbjct: 109980 actgacaaaattcaacatat 109961
to top
>dbj|AB009053.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2
          Length = 78145

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   atgacaaaagtttcttcttc 148
             ||||||||||||||||||||
Sbjct: 64515 atgacaaaagtttcttcttc 64496
to top
>gb|AC115820.11| Mus musculus chromosome 8, clone RP23-479K9, complete sequence
          Length = 185977

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    acatgactgacaaaattcaa 36
             ||||||||||||||||||||
Sbjct: 77480 acatgactgacaaaattcaa 77499
to top
>gb|AC134841.4| Mus musculus BAC clone RP24-372K3 from 5, complete sequence
          Length = 159033

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    tgacaaaattcaacatatgatatt 47
             ||||||||| ||||||||||||||
Sbjct: 63820 tgacaaaatccaacatatgatatt 63843
to top
>gb|AC134584.5| Mus musculus BAC clone RP23-299M6 from 5, complete sequence
          Length = 212518

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 24     tgacaaaattcaacatatgatatt 47
              ||||||||| ||||||||||||||
Sbjct: 190807 tgacaaaatccaacatatgatatt 190784
to top
>gb|AC153526.13| Mus musculus 10 BAC RP23-383C2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 200117

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 123   taaagcatgacaaaagttt 141
             |||||||||||||||||||
Sbjct: 68736 taaagcatgacaaaagttt 68754
to top
>gb|AC102119.10| Mus musculus chromosome 19, clone RP23-173J6, complete sequence
          Length = 218170

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     tgcaaaaataacattgatt 71
              |||||||||||||||||||
Sbjct: 209503 tgcaaaaataacattgatt 209485
to top
>gb|AC165239.3| Mus musculus chromosome 19, clone RP24-73C2, complete sequence
          Length = 208461

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    tgcaaaaataacattgatt 71
             |||||||||||||||||||
Sbjct: 59122 tgcaaaaataacattgatt 59104
to top
>emb|AL935124.31| Mouse DNA sequence from clone RP23-88C15 on chromosome 2, complete
             sequence
          Length = 193805

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    caaaacatgactgacaaaa 31
             |||||||||||||||||||
Sbjct: 49994 caaaacatgactgacaaaa 49976
to top
>emb|CR956619.7| M.truncatula DNA sequence from clone MTH2-65F22 on chromosome 3, complete
              sequence
          Length = 148409

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 107    ctcccaatggaagcactaa 125
              |||||||||||||||||||
Sbjct: 118720 ctcccaatggaagcactaa 118738
to top
>gb|AC131652.2| Mus musculus BAC clone RP23-216A20 from 16, complete sequence
          Length = 184989

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    actgacaaaattcaacata 40
             |||||||||||||||||||
Sbjct: 18913 actgacaaaattcaacata 18931
to top
>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence
          Length = 175569

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    caaaacatgactgacaaaa 31
             |||||||||||||||||||
Sbjct: 38675 caaaacatgactgacaaaa 38657
to top
>gb|DQ148139.1| Macaca mulatta clone ss1_b16_t7_351 mitogen-activated protein
           kinase 14 (MAPK14) mRNA, 3' UTR
          Length = 531

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 13  caaaacatgactgacaaaattca 35
           ||||||||| |||||||||||||
Sbjct: 188 caaaacatggctgacaaaattca 166
to top
>gb|AY349859.1| Drosophila simulans strain Sim6 Sr-CII gene, partial cds
          Length = 1647

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  catatgatattctagctgc 55
           |||||||||||||||||||
Sbjct: 736 catatgatattctagctgc 754
to top
>emb|AL389888.8| Human DNA sequence from clone RP11-389K14 on chromosome 9 Contains two
              olfactory receptor pseudogenes and the 3' end of a novel
              gene, complete sequence
          Length = 202874

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     ctgacaaaattcaacatat 41
              |||||||||||||||||||
Sbjct: 105723 ctgacaaaattcaacatat 105741
to top
>gb|AF370174.1| Arabidopsis thaliana unknown protein (At5g62900) mRNA, complete cds
          Length = 732

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 130 tgacaaaagtttcttcttc 148
           |||||||||||||||||||
Sbjct: 715 tgacaaaagtttcttcttc 697
to top
>dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone: L139G16, complete
             sequence
          Length = 157870

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     aatcgctcaaaacatgact 24
             |||||||||||||||||||
Sbjct: 88396 aatcgctcaaaacatgact 88378
to top
>gb|AC117535.2| Homo sapiens chromosome 5 clone RP11-937M12, complete sequence
          Length = 176581

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     tgacaaaattcaacatatg 42
              |||||||||||||||||||
Sbjct: 152521 tgacaaaattcaacatatg 152503
to top
>gb|AC008861.6| Homo sapiens chromosome 5 clone CTD-2185C4, complete sequence
          Length = 75276

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    tgacaaaattcaacatatg 42
             |||||||||||||||||||
Sbjct: 26902 tgacaaaattcaacatatg 26884
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 52       ctgcaaaaataacattgat 70
                |||||||||||||||||||
Sbjct: 26413089 ctgcaaaaataacattgat 26413107
to top
>gb|AY865056.1| Drosophila simulans strain Zs24 SR-CII gene, complete cds
          Length = 2130

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  catatgatattctagctgc 55
           |||||||||||||||||||
Sbjct: 973 catatgatattctagctgc 991
to top
>gb|AY865053.1| Drosophila simulans strain Zs15 SR-CII gene, complete cds
          Length = 2135

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  catatgatattctagctgc 55
           |||||||||||||||||||
Sbjct: 976 catatgatattctagctgc 994
to top
>gb|AY865052.1| Drosophila simulans strain Zs9 SR-CII gene, complete cds
          Length = 2127

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  catatgatattctagctgc 55
           |||||||||||||||||||
Sbjct: 976 catatgatattctagctgc 994
to top
>gb|AY865051.1| Drosophila simulans strain Zs7 SR-CII gene, complete cds
          Length = 2130

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  catatgatattctagctgc 55
           |||||||||||||||||||
Sbjct: 973 catatgatattctagctgc 991
to top
>gb|AY865048.1| Drosophila simulans strain Bs8 SR-CII gene, complete cds
          Length = 2130

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  catatgatattctagctgc 55
           |||||||||||||||||||
Sbjct: 973 catatgatattctagctgc 991
to top
>gb|AY865046.1| Drosophila simulans strain Bs6 SR-CII gene, complete cds
          Length = 2124

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  catatgatattctagctgc 55
           |||||||||||||||||||
Sbjct: 973 catatgatattctagctgc 991
to top
>gb|AC122136.4| Homo sapiens BAC clone RP11-609F13 from 2, complete sequence
          Length = 64085

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 40    atgatattctagctgcaaaaata 62
             ||||||||||| |||||||||||
Sbjct: 29178 atgatattctacctgcaaaaata 29156
to top
>gb|AC157494.2| Mus musculus BAC clone RP23-2F1 from chromosome 12, complete sequence
          Length = 189996

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 22    actgacaaaattcaacatatgatattc 48
             |||||||||||||| ||| ||||||||
Sbjct: 92247 actgacaaaattcatcatttgatattc 92273
to top
>gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosome 14, complete
             sequence
          Length = 211647

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 130   tgacaaaagtttcttcttccgca 152
             |||||| ||||||||||||||||
Sbjct: 57874 tgacaatagtttcttcttccgca 57896
to top
>gb|AC010207.18| Homo sapiens 3 BAC RP11-375I20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184582

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     gactgacaaaattcaacat 39
              |||||||||||||||||||
Sbjct: 146651 gactgacaaaattcaacat 146633
to top
>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0709F06
          Length = 170964

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    ctgcaaaaataacattgat 70
             |||||||||||||||||||
Sbjct: 25128 ctgcaaaaataacattgat 25146
to top
>dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0085J13
          Length = 130185

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     ctgcaaaaataacattgat 70
              |||||||||||||||||||
Sbjct: 110816 ctgcaaaaataacattgat 110834
to top
>gb|AC156025.2| Mus musculus BAC clone RP23-71L21 from 14, complete sequence
          Length = 215610

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 130   tgacaaaagtttcttcttccgca 152
             |||||| ||||||||||||||||
Sbjct: 12715 tgacaatagtttcttcttccgca 12693
to top
>emb|AL161662.6|CNS01RH6 Human chromosome 14 DNA sequence BAC R-439L12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197369

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 137    agtttcttcttccgcaaga 155
              |||||||||||||||||||
Sbjct: 107246 agtttcttcttccgcaaga 107264
to top
>gb|AC154565.2| Mus musculus BAC clone RP23-403J19 from chromosome 16, complete
            sequence
          Length = 202981

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 22   actgacaaaattcaacata 40
            |||||||||||||||||||
Sbjct: 7279 actgacaaaattcaacata 7261
to top
>dbj|AP001924.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-166D19, complete
             sequence
          Length = 190360

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 37    catatgatattctagctgcaaaaataa 63
             ||||| |||||| ||||||||||||||
Sbjct: 53088 catatcatattcaagctgcaaaaataa 53114
to top
>gb|AC106797.2| Homo sapiens chromosome 5 clone RP11-433I2, complete sequence
          Length = 169265

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 24     tgacaaaattcaacatatg 42
              |||||||||||||||||||
Sbjct: 154956 tgacaaaattcaacatatg 154974
to top
>gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromosome unknown, complete
             sequence
          Length = 228494

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 127   gcatgacaaaagtttcttcttcc 149
             |||||| ||||||||||||||||
Sbjct: 83189 gcatgagaaaagtttcttcttcc 83211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,698,741
Number of Sequences: 3902068
Number of extensions: 1698741
Number of successful extensions: 135315
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135183
Number of HSP's gapped (non-prelim): 132
length of query: 157
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 135
effective length of database: 17,147,199,772
effective search space: 2314871969220
effective search space used: 2314871969220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top