ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TFDB_RALEJ (P27138) 2,4-dichlorophenol 6-monooxygenase (EC 1.14.... 30 4.6
2PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B me... 29 6.0
3C560_CYACA (P48935) Succinate dehydrogenase cytochrome b560 subu... 29 7.8

>TFDB_RALEJ (P27138) 2,4-dichlorophenol 6-monooxygenase (EC 1.14.13.20)|
           (2,4-dichlorophenol hydroxylase) (2,4-DCP hydroxylase)
          Length = 598

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 436 IDTEGLVAKDKFHVSYRGAKLNSSLSQVLVNCLRYYLRR 320
           IDT  ++ +  FHV+YR   L +  +  LV+ +R  L R
Sbjct: 545 IDTGAILVRPDFHVAYRATSLPADAAGDLVSAMRRILGR 583



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>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1377

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 244 KRLHRQEHEM---RRHRTIINSCLHLSRASGGNSANN*PA 354
           +RL  QE E    +R  TI+N C   SRA GG  A   P+
Sbjct: 599 ERLREQEMERLERQRLETILNLCAEYSRADGGPEAGELPS 638



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>C560_CYACA (P48935) Succinate dehydrogenase cytochrome b560 subunit (Succinate|
           dehydrogenase, subunit III)
          Length = 132

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 427 EGLVAKDKFHVSYRGAKLNSSLSQVLVNCLRYYL 326
           E ++ +D F        L+ SL  VL+NCLRY+L
Sbjct: 98  EVILMEDNFVTMSTKLSLSLSLVLVLINCLRYFL 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,274,497
Number of Sequences: 219361
Number of extensions: 1386308
Number of successful extensions: 2822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2822
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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