ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart17e09 |
|---|---|
| Clone Library Name | barley_pub |
>AMY2_HORVU (P04063) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY2-2) (High pI alpha-amylase) Length = 427 Score = 35.8 bits (81), Expect = 0.058 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = -1 Query: 457 QLGAEGFAVGFLYTLVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNW 278 ++G +G A F +T G++ V L ++ + M IGWW + V ++DN Sbjct: 258 KVGGKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGM-----IGWWPAKAVTFVDNH 312 Query: 277 KTGYSIHTFWP 245 TG + H WP Sbjct: 313 DTGSTQH-MWP 322
>AMY3_HORVU (P04747) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone PHV19) (Fragment) Length = 368 Score = 35.8 bits (81), Expect = 0.058 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = -1 Query: 457 QLGAEGFAVGFLYTLVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNW 278 ++G +G A F +T G++ V L ++ + M IGWW + V ++DN Sbjct: 258 KVGGKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGM-----IGWWPAKAVTFVDNH 312 Query: 277 KTGYSIHTFWP 245 TG + H WP Sbjct: 313 DTGSTQH-MWP 322
>AMY6_HORVU (P04750) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clones GRAMY56 and 963) Length = 429 Score = 35.4 bits (80), Expect = 0.075 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = -1 Query: 457 QLGAEGFAVGFLYTLVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNW 278 ++G G A F +T G++ V L ++ + M IGWW + V ++DN Sbjct: 260 KVGGSGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGM-----IGWWPAKAVTFVDNH 314 Query: 277 KTGYSIHTFWP 245 TG + H WP Sbjct: 315 DTGSTQH-MWP 324
>AMY1_ORYSA (P17654) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 434 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/69 (28%), Positives = 30/69 (43%) Frame = -1 Query: 451 GAEGFAVGFLYTLVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNWKT 272 GA A F +T G++ V L ++ + M IGWW + ++DN T Sbjct: 267 GANSNATAFDFTTKGILNVAVEGELWRLRGEDGKAPGM-----IGWWPAKATTFVDNHDT 321 Query: 271 GYSIHTFWP 245 G + H WP Sbjct: 322 GSTQH-LWP 329
>SYNPO_MOUSE (Q8CC35) Synaptopodin| Length = 929 Score = 32.0 bits (71), Expect = 0.83 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%) Frame = +2 Query: 68 SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIW--------MDDSTSSATKERSIDGRLG 223 S++H PEN + TK QP S++++ +TSS T R++ R Sbjct: 773 SLYHGYLPENGVLRPEPTKQQPYQMRPSLYALSPVKEPAKASSRATSSRTPSRTVSPRAA 832 Query: 224 QHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDR 325 PA +P ++ VP+LP + P P P R Sbjct: 833 S---PA-KPSSLDLVPNLPRAGLPPSPALPRPSR 862
>AMY4_HORVU (P04748) Alpha-amylase type B isozyme (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone 103) (Fragment) Length = 153 Score = 31.6 bits (70), Expect = 1.1 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 322 IGWWAVRKVVYLDNWKTGYSIHTFWP 245 IGWW + V ++DN TG + H WP Sbjct: 24 IGWWPAKAVTFVDNHDTGSTQH-MWP 48
>SYNPO_RAT (Q9Z327) Synaptopodin| Length = 931 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Frame = +2 Query: 68 SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIWMDDS----TSSATKERSIDGRLGQHLP 235 S++H PEN + TK QP S++++ +S AT R+ + Sbjct: 775 SLYHGYLPENGVLRPEPTKQQPHQMRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAA 834 Query: 236 PATRPEGMNAVPSLPVIQVNHLPDCPPPDR 325 +P ++ VP+LP + P P P R Sbjct: 835 SPAKPSSLDLVPNLPRAGLPPSPALPRPSR 864
>AMC2_ORYSA (P27941) Alpha-amylase isozyme C2 precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 31.6 bits (70), Expect = 1.1 Identities = 21/69 (30%), Positives = 30/69 (43%) Frame = -1 Query: 451 GAEGFAVGFLYTLVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNWKT 272 G + F +T G+M V L ++ Q + A IGWW + V ++DN T Sbjct: 261 GTASAGMVFDFTTKGIMNTAVEGELWRLIDQQGK-----APGVIGWWPAKAVTFVDNHDT 315 Query: 271 GYSIHTFWP 245 G S WP Sbjct: 316 G-STQQMWP 323
>AM2A_ORYSA (P27935) Alpha-amylase isozyme 2A precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 31.6 bits (70), Expect = 1.1 Identities = 21/69 (30%), Positives = 30/69 (43%) Frame = -1 Query: 451 GAEGFAVGFLYTLVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNWKT 272 G + F +T G+M V L ++ Q + A IGWW + V ++DN T Sbjct: 261 GTASAGMVFDFTTKGIMNTAVEGELWRLIDQQGK-----APGVIGWWPAKAVTFVDNHDT 315 Query: 271 GYSIHTFWP 245 G S WP Sbjct: 316 G-STQQMWP 323
>AMY1_HORVU (P00693) Alpha-amylase type A isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY1) (Low pI alpha-amylase) Length = 438 Score = 30.8 bits (68), Expect = 1.9 Identities = 20/69 (28%), Positives = 31/69 (44%) Frame = -1 Query: 451 GAEGFAVGFLYTLVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNWKT 272 GA + F +T G++ A V L ++ Q + A +GWW + ++DN T Sbjct: 262 GAASAGMVFDFTTKGILNAAVEGELWRLIDPQGK-----APGVMGWWPAKAATFVDNHDT 316 Query: 271 GYSIHTFWP 245 G S WP Sbjct: 317 G-STQAMWP 324
>PROS_DROVI (Q9U6A1) Protein prospero| Length = 1556 Score = 30.4 bits (67), Expect = 2.4 Identities = 18/64 (28%), Positives = 27/64 (42%) Frame = +2 Query: 248 PEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLCLQALHLHQQVCDHSYHQAHEGVQE 427 P+GMN V + + P C PPD+ Q Q QQ + Q H+ Q+ Sbjct: 1020 PQGMNPVAAAALYNSMASPFCLPPDQQQQQQ------QQQQAAQQQQQQAVQQQHQSAQQ 1073 Query: 428 TNRK 439 T ++ Sbjct: 1074 TQQQ 1077
>G3OX2_ARATH (Q9ZT84) Gibberellin 3-beta-dioxygenase 2 (EC 1.14.11.15)| (Gibberellin 3 beta-hydroxylase 2) (GA 3-oxidase 2) (AtGA3ox2) Length = 347 Score = 30.0 bits (66), Expect = 3.2 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +2 Query: 281 VIQVNHLPDCPPPDR 325 VIQ+NH P CP PDR Sbjct: 204 VIQLNHYPKCPEPDR 218
>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor| DB1) Length = 516 Score = 30.0 bits (66), Expect = 3.2 Identities = 15/58 (25%), Positives = 22/58 (37%) Frame = +2 Query: 242 TRPEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLCLQALHLHQQVCDHSYHQAHE 415 T P + ++PV Q P P H C+ C HL++ HS + E Sbjct: 146 TNPSSSASTTAMPVTQSVKKPSKPVKKNHACEMCGKAFRDVYHLNRHKLSHSDEKPFE 203
>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 437 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/47 (27%), Positives = 28/47 (59%) Frame = -2 Query: 285 ITGRLGTAFIPSGRVAGGKCCPNRPSMLLSFVAEDVESSIQIDHTEI 145 + GR+G+ F+ +G GG C P + ++ L A+D ++ +++ T + Sbjct: 246 LDGRIGSKFLHAGPGYGGSCFP-KDTLALVKTAQDHDTPVRLVETTV 291
>TONB_ECOLI (P02929) Protein tonB| Length = 239 Score = 28.9 bits (63), Expect = 7.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 397 LSSGPRGCTRNQPQTPPRRAA 459 ++SGPR +RNQPQ P R A Sbjct: 149 VASGPRALSRNQPQYPARAQA 169
>NORM_PASMU (Q9CMZ9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 464 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = -1 Query: 454 LGAEGFAVGFLYTLVGLMIAVVTHLLVKVESLQTQRFAML 335 LGAEGF +GF +V L IA T L++++ +Q Q A+L Sbjct: 421 LGAEGFWIGF---VVSLTIA-ATLLMIRMRKIQAQPDAIL 456
>BLK_HUMAN (P51451) Tyrosine-protein kinase BLK (EC 2.7.10.2) (B lymphocyte| kinase) (p55-BLK) Length = 504 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +2 Query: 176 STSSATKERSIDGR-LGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRH 328 S+ KE+ I + GQ P + +A P P++ NHL PPPD H Sbjct: 4 SSKKPDKEKPIKEKDKGQWSPLKVSAQDKDAPPLPPLVVFNHLTP-PPPDEH 54
>WC1_NEUCR (Q01371) White collar 1 protein (WC1)| Length = 1167 Score = 28.9 bits (63), Expect = 7.1 Identities = 23/95 (24%), Positives = 36/95 (37%) Frame = +2 Query: 176 STSSATKERSIDGRLGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLC 355 ST+ AT S + PPAT P G + LP HL H + Sbjct: 1046 STTIATSANSAASTVNALGPPATGPSGGSPAQHLP----PHLQG---------THLNAQA 1092 Query: 356 LQALHLHQQVCDHSYHQAHEGVQETNRKPLRAELH 460 +Q +H H+Q H + Q+ ++ + + H Sbjct: 1093 MQRVHQHKQHQQHQQQHQQQHQQQHQQQHQQLQQH 1127
>FA12_CAVPO (Q04962) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman| factor) (HAF) [Contains: Coagulation factor XIIa heavy chain; Coagulation factor XIIa light chain] (Fragment) Length = 603 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +2 Query: 320 DRHD--CQHCKSLCLQALHLHQQVCDHSY 400 DRH+ C+HC++L + + LH+ SY Sbjct: 416 DRHNQSCEHCQTLAVHSYRLHEAFSPSSY 444
>CYCA_ECOLI (P0AAE0) D-serine/D-alanine/glycine transporter| Length = 470 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 475 YHGSGMQLGAEGFAVGFLYTLVGLMIAVVTHLL--VKVESLQTQRFAMLAVMAIGWWA 308 + GSG + G ++ F+Y ++G M+ V + + + +L+ + F+ A +G WA Sbjct: 42 FMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWA 99
>CYCA_ECO57 (P0AAE1) D-serine/D-alanine/glycine transporter| Length = 470 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = -1 Query: 475 YHGSGMQLGAEGFAVGFLYTLVGLMIAVVTHLL--VKVESLQTQRFAMLAVMAIGWWA 308 + GSG + G ++ F+Y ++G M+ V + + + +L+ + F+ A +G WA Sbjct: 42 FMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWA 99
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +2 Query: 230 LPPATRPEGMNAVPSLPVIQVNHLPDCPPPD 322 LPPA+ PE A PS P + LP+ P P+ Sbjct: 1392 LPPASLPEPTPAPPSSPPPPSSPLPEPPQPE 1422
>NU5M_CANPA (P48919) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 555 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -1 Query: 433 VGFLYTLVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIG 317 +G + TLV +IA+VT+ + KV +L T + V+AIG Sbjct: 236 LGGVTTLVSGLIAIVTNDIKKVIALSTMSQLSIMVLAIG 274 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,205,421 Number of Sequences: 219361 Number of extensions: 1653525 Number of successful extensions: 5161 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4918 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5156 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
