Clone Information

BLAST Search Result

Clone Name	rbart17e09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC016781.6\| Oryza sativa (japonica cultivar-group) clone OSJN...	216	5e-53
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	216	5e-53
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	216	5e-53
4	dbj\|AK109347.2\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
5	dbj\|AK102421.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
6	dbj\|AK061364.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
7	gb\|BT017829.1\| Zea mays clone EL01N0508G07.c mRNA sequence	214	2e-52
8	gb\|AY108427.1\| Zea mays PCO132322 mRNA sequence	214	2e-52
9	ref\|XM_462955.1\| Oryza sativa (japonica cultivar-group), predic...	210	3e-51
10	ref\|NM_104861.1\| Arabidopsis thaliana oligosaccharide transporte...	44	0.41
11	dbj\|AK176101.1\| Arabidopsis thaliana mRNA for hypothetical prote...	44	0.41
12	gb\|AC005882.1\|AC005882 Arabidopsis thaliana chromosome I BAC T13...	44	0.41
13	gb\|AC103975.9\| Homo sapiens chromosome 15, clone RP11-1001M11, c...	42	1.6
14	gb\|AC022748.10\| Homo sapiens chromosome 15, clone RP11-160C18, c...	42	1.6
15	gb\|AC157948.5\| Mus musculus BAC clone RP23-197K17 from chromosom...	42	1.6
16	gb\|AC149283.2\| Mus musculus BAC clone RP23-233O21 from 7, comple...	42	1.6
17	ref\|NM_101029.1\| Arabidopsis thaliana oligosaccharide transporte...	40	6.4
18	ref\|XM_655563.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	6.4
19	gb\|AC125331.4\| Mus musculus chromosome 7 clone RP23-11L1, comple...	40	6.4
20	gb\|AC122245.5\| Mus musculus BAC clone RP23-151P21 from 18, compl...	40	6.4
21	gb\|AC122828.3\| Mus musculus BAC clone RP23-215B8 from 13, comple...	40	6.4
22	gb\|AC087237.14\| Homo sapiens 12p BAC RP11-405A12 (Roswell Park C...	40	6.4
23	emb\|BX294025.1\|NCB16M17 Neurospora crassa DNA linkage group V BA...	40	6.4
24	gb\|AC011661.5\|AC011661 Genomic sequence for Arabidopsis thaliana...	40	6.4
25	emb\|AL805923.6\| Mouse DNA sequence from clone RP23-65B16 on chro...	40	6.4
26	gb\|AC159189.2\| Mus musculus BAC clone RP24-159L17 from chromosom...	40	6.4

>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
             sequence
          Length = 151269

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Plus

                                                                         
Query: 227   catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 286
             ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 94535 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 94594

                                                                         
Query: 287   caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 346
             ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 94595 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 94654

                                                                         
Query: 347   tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 406
              |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 94655 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 94714

                                                                      
Query: 407   gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 463
              |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 94715 ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 94771

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Plus

                                                                            
Query: 227      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 286
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20176451 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20176510

                                                                            
Query: 287      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 346
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20176511 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20176570

                                                                            
Query: 347      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 406
                 |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 20176571 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 20176630

                                                                         
Query: 407      gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 463
                 |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 20176631 ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 20176687

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Plus

                                                                            
Query: 227      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 286
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20169478 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20169537

                                                                            
Query: 287      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 346
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20169538 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20169597

                                                                            
Query: 347      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 406
                 |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 20169598 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 20169657

                                                                         
Query: 407      gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 463
                 |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 20169658 ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 20169714

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>dbj|AK109347.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G06, full
            insert sequence
          Length = 1273

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Minus

                                                                        
Query: 227  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 286
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1032 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 973

                                                                        
Query: 287  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 346
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 972  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 913

                                                                        
Query: 347  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 406
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 912  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 853

                                                                     
Query: 407  gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 463
             |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 852  ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 796

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>dbj|AK102421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D18, full
            insert sequence
          Length = 1398

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Minus

                                                                        
Query: 227  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 286
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1052 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 993

                                                                        
Query: 287  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 346
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 992  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 933

                                                                        
Query: 347  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 406
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 932  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 873

                                                                     
Query: 407  gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 463
             |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 872  ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 816

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>dbj|AK061364.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D03, full
            insert sequence
          Length = 1328

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Minus

                                                                        
Query: 227  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 286
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1047 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 988

                                                                        
Query: 287  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 346
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 987  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 928

                                                                        
Query: 347  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 406
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 927  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 868

                                                                     
Query: 407  gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 463
             |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 867  ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 811

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>gb|BT017829.1| Zea mays clone EL01N0508G07.c mRNA sequence
          Length = 1374

 Score =  214 bits (108), Expect = 2e-52
 Identities = 210/244 (86%)
 Strand = Plus / Minus

                                                                        
Query: 232  acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 291
            |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 1055 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 996

                                                                        
Query: 292  aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 351
            | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 995  agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 936

                                                                        
Query: 352  gtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggccca 411
            | ||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||
Sbjct: 935  gcgtctgcaggctctccaccttcaccaacaagtgtgtcaccacagcgatcatgagaccca 876

                                                                        
Query: 412  cgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctgaaccat 471
            |||| ||||||||||| || || | ||||||||| || || |||||||||||||| || |
Sbjct: 875  cgagtgtgtacaagaacccgacagtaaacccctcagcccccagctgcatccctgacccct 816

                
Query: 472  ggta 475
            ||||
Sbjct: 815  ggta 812

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>gb|AY108427.1| Zea mays PCO132322 mRNA sequence
          Length = 860

 Score =  214 bits (108), Expect = 2e-52
 Identities = 210/244 (86%)
 Strand = Plus / Minus

                                                                       
Query: 232 acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 291
           |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 513 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 454

                                                                       
Query: 292 aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 351
           | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 453 agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 394

                                                                       
Query: 352 gtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggccca 411
           ||||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||
Sbjct: 393 gtgtctgcaggctctccaccttcaccaacaagtgtgtcaccacagcgatcatgagaccca 334

                                                                       
Query: 412 cgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctgaaccat 471
           |||| ||||||||||| || || | ||||||||| || || | |||||||||||| || |
Sbjct: 333 cgagtgtgtacaagaacccgacagtaaacccctcagcccccaactgcatccctgacccct 274

               
Query: 472 ggta 475
           ||||
Sbjct: 273 ggta 270

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>ref|XM_462955.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score =  210 bits (106), Expect = 3e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                        
Query: 230  ttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccag 289
            |||||||||||| || |||||||||||||||||||| || ||||||||||||||||||| 
Sbjct: 1011 ttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatccaa 952

                                                                        
Query: 290  gtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcg 349
               || ||||||| | |||||||||||||| ||   |||||| |||||||| | ||| ||
Sbjct: 951  aagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaaacg 892

                                                                        
Query: 350  ctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggcc 409
            |||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| || ||
Sbjct: 891  ctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgagccc 832

                                                                  
Query: 410  cacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 463
            |||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 831  cacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 778

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>ref|NM_104861.1| Arabidopsis thaliana oligosaccharide transporter AT1G61790 mRNA,
            complete cds
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 270  ccagtcttccagttatccaggtaaac 295
            ||||||||||||||||||| ||||||
Sbjct: 1001 ccagtcttccagttatccaagtaaac 976

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>dbj|AK176101.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-88-K11
          Length = 345

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 270 ccagtcttccagttatccaggtaaac 295
           ||||||||||||||||||| ||||||
Sbjct: 77  ccagtcttccagttatccaagtaaac 52

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>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
             sequence
          Length = 87394

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 270   ccagtcttccagttatccaggtaaac 295
             ||||||||||||||||||| ||||||
Sbjct: 67285 ccagtcttccagttatccaagtaaac 67260

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>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence
          Length = 213676

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 292   aaaccaccttcctgactgccc 312
             |||||||||||||||||||||
Sbjct: 22849 aaaccaccttcctgactgccc 22869

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>gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, complete sequence
          Length = 163642

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 292    aaaccaccttcctgactgccc 312
              |||||||||||||||||||||
Sbjct: 120526 aaaccaccttcctgactgccc 120506

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>gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosome 7, complete
            sequence
          Length = 201846

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 362  gctctccaccttcaccagcaagtgt 386
            |||||| ||||||||||||||||||
Sbjct: 2447 gctctctaccttcaccagcaagtgt 2423

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>gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, complete sequence
          Length = 223763

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 362    gctctccaccttcaccagcaagtgt 386
              |||||| ||||||||||||||||||
Sbjct: 197849 gctctctaccttcaccagcaagtgt 197873

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>ref|NM_101029.1| Arabidopsis thaliana oligosaccharide transporter AT1G11560 mRNA,
           complete cds
          Length = 1032

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 270 ccagtcttccagttatccaggtaaaccaccttcctgactgccca 313
           ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 989 ccagtcttccaattatccaagtaaacaactttcctcacagccca 946

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>ref|XM_655563.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3051.2), mRNA
          Length = 2367

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   ataaaatgactcggttctct 70
            ||||||||||||||||||||
Sbjct: 1584 ataaaatgactcggttctct 1565

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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    ccaccttcctgactgcccac 314
              ||||||||||||||||||||
Sbjct: 121813 ccaccttcctgactgcccac 121832

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>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence
          Length = 191988

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cctctgcaacaaaggaaaga 202
              ||||||||||||||||||||
Sbjct: 146179 cctctgcaacaaaggaaaga 146160

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>gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, complete sequence
          Length = 198604

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    tgcaacaaaggaaagaagca 206
              ||||||||||||||||||||
Sbjct: 129467 tgcaacaaaggaaagaagca 129448

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>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166380

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    ccagcaagtgtgtgaccacagcta 399
              ||||||||||||| ||||||||||
Sbjct: 112713 ccagcaagtgtgtcaccacagcta 112736

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>emb|BX294025.1|NCB16M17 Neurospora crassa DNA linkage group V BAC clone B16M17
          Length = 78402

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 333   gccagcattgcaaatcgctgtgtc 356
             ||||||||||||| ||||||||||
Sbjct: 44258 gccagcattgcaagtcgctgtgtc 44281

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>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I,
             complete sequence
          Length = 84797

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 270   ccagtcttccagttatccaggtaaaccaccttcctgactgccca 313
             ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 67360 ccagtcttccaattatccaagtaaacaactttcctcacagccca 67317

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>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 392    cacagctatcatcaggccca 411
              ||||||||||||||||||||
Sbjct: 100630 cacagctatcatcaggccca 100611

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>gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosome 6, complete sequence
          Length = 160884

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    acagctatcatcaggcccac 412
              ||||||||||||||||||||
Sbjct: 109099 acagctatcatcaggcccac 109080


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,136,748
Number of Sequences: 3902068
Number of extensions: 4136748
Number of successful extensions: 68001
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67919
Number of HSP's gapped (non-prelim): 75
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result