ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart17e05 |
|---|---|
| Clone Library Name | barley_pub |
>MBN_DROME (P52302) Protein lethal(3)malignant blood neoplasm 1 (Mbn(83))| Length = 653 Score = 33.1 bits (74), Expect = 0.48 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Frame = -3 Query: 505 SSNLPFGQEPEGNGNTGVAQPTLP-LPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNS 329 ++N P G P G G+A P P+A G GG+ G G G GS + Sbjct: 414 TANTPTGNVPSNGG--GIAAGKAPGNPQAGGSGGIIGAGAPGGRKVSAGGIGSGSAI--- 468 Query: 328 PYDSGAPKHGCSLLGIGVALGVSSAIG 248 G G G G A+G SAIG Sbjct: 469 ----GGVSGGSKASGNGGAIGSGSAIG 491
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 33.1 bits (74), Expect = 0.48 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -3 Query: 424 AAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKHGCSLLGIGVALGVSSAIGM 245 ++G G VA QG +T GFG+ P+ + P G+P G + G A +S +G Sbjct: 1948 SSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFG-GVPAFGSAPAFTSPLGS 2006 Query: 244 ALG 236 G Sbjct: 2007 TGG 2009
>NUPL2_BRARE (Q6P0U9) Nucleoporin-like 2| Length = 414 Score = 31.6 bits (70), Expect = 1.4 Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 8/99 (8%) Frame = -3 Query: 514 GHGSSNLPFGQEPEGNGNTGVAQPTLPL--------PEAAGFGGVAGQGHAVEDVGQTIG 359 G GSS F Q G GN + + P A GFG +G GQ G Sbjct: 267 GFGSS--AFAQPSSGFGNPAPSAASFSFAAADSESKPSAGGFGSASGFSFKTATAGQGSG 324 Query: 358 FGSQPLVDNSPYDSGAPKHGCSLLGIGVALGVSSAIGMA 242 FGS G+ S G G + G SA G A Sbjct: 325 FGS---------GFGSSSGFGSSSGFGSSSGFGSAFGSA 354
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Frame = -3 Query: 514 GHGSSNLPFGQEP-EGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLV 338 G G + GQ P G +G Q GFG + G V G + GFG Sbjct: 412 GRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSGYSSGFGHHE-- 469 Query: 337 DNSPYDSGAPKHG 299 +S + SG +HG Sbjct: 470 SSSEHSSGYTQHG 482
>STML1_HUMAN (Q9UBI4) Stomatin-like protein 1 (SLP-1) (Stomatin-related protein)| (STORP) (EPB72-like 1) (UNC24 homolog) Length = 398 Score = 30.4 bits (67), Expect = 3.1 Identities = 15/58 (25%), Positives = 25/58 (43%) Frame = -1 Query: 444 PLCRCQKRQGSVVSLGRGMQWRTWGRRLDLXXXXXXXXXXXXAVRRSMDAACLASELR 271 P C+ + G+V+S+G +Q+R W L + + +M A L LR Sbjct: 127 PPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLR 184
>TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase K (EC| 2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K)) (Transglutaminase-1) (Epidermal TGase) Length = 815 Score = 30.4 bits (67), Expect = 3.1 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = -2 Query: 422 GRVRWCRWAGACS-GGRGADDWIWQPT 345 GR W R G CS G RG DDW +P+ Sbjct: 43 GRSFWARCCGCCSCGNRGDDDWGPEPS 69
>ITA2B_HUMAN (P08514) Integrin alpha-IIb precursor (Platelet membrane| glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen) [Contains: Integrin alpha-IIb heavy chain; Integrin alpha-IIb light chain] Length = 1039 Score = 30.4 bits (67), Expect = 3.1 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -3 Query: 508 GSSNLPFGQ-EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQP-LVD 335 GS+ P G + +G + VA P +GG +G+G + +GQ+ G S+P V Sbjct: 388 GSAIAPLGDLDRDGYNDIAVAAP---------YGGPSGRGQVLVFLGQSEGLRSRPSQVL 438 Query: 334 NSPYDSGAPKHGCSLLG 284 +SP+ +G+ G SL G Sbjct: 439 DSPFPTGS-AFGFSLRG 454
>K2C6E_HUMAN (P48668) Keratin, type II cytoskeletal 6E (Cytokeratin-6E) (CK 6E)| (K6e keratin) (Keratin K6h) Length = 563 Score = 30.0 bits (66), Expect = 4.0 Identities = 25/82 (30%), Positives = 36/82 (43%) Frame = -3 Query: 481 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 302 E G N V Q T+ ++G+GG +G VG +G G S Y G+ Sbjct: 478 EGVGQVNVSVVQSTI----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 518 Query: 301 GCSLLGIGVALGVSSAIGMALG 236 G+G+ G SS+ G A+G Sbjct: 519 -----GLGIGGGFSSSSGRAIG 535
>K2C6D_HUMAN (P48667) Keratin, type II cytoskeletal 6D (Cytokeratin-6D) (CK 6D)| (K6d keratin) (Fragment) Length = 384 Score = 30.0 bits (66), Expect = 4.0 Identities = 26/82 (31%), Positives = 36/82 (43%) Frame = -3 Query: 481 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 302 E G N V Q T+ ++G+GG +G VG +G G S Y G+ Sbjct: 299 EGVGQVNVSVVQSTV----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 339 Query: 301 GCSLLGIGVALGVSSAIGMALG 236 G+GV G SS+ G A+G Sbjct: 340 -----GLGVGGGFSSSSGRAIG 356
>SN1L1_HUMAN (P57059) Serine/threonine-protein kinase SNF1-like kinase 1 (EC| 2.7.11.1) (Serine/threonine-protein kinase SNF1LK) Length = 783 Score = 29.6 bits (65), Expect = 5.3 Identities = 32/122 (26%), Positives = 40/122 (32%), Gaps = 18/122 (14%) Frame = +3 Query: 210 QERTHTNQRPRAMPMAELTPSATPMPSKLHPCFG---APLSYGLLSTN-GWLPNPIVXXX 377 Q P A P P P P + PC G APL LL++ LP P++ Sbjct: 658 QRLLQLQHHPAAAPGCSQAPQPAPAPFVIAPCDGPGAAPLPSTLLTSGLPLLPPPLLQTG 717 Query: 378 XXXXXXXXXXXXXXXXXGSGRVGCATPVLPLP------SGSCPKGRL--------LLPCP 515 G+G A P +P P G P G L L+PC Sbjct: 718 ASPVASAAQLLDTHLHIGTGPT--ALPAVPPPRLARLAPGCEPLGLLQGDCEMEDLMPCS 775 Query: 516 TG 521 G Sbjct: 776 LG 777
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Frame = +1 Query: 247 CQWQS*HPAQLRCQASCIHASAHR-------CRMGCCPPMVGCQIQSSAPRPPLHAPA 399 CQ S PA C SC S+ CR CC P+ C + +S+ +P PA Sbjct: 188 CQKSSCQPAC--CTTSCCRPSSSVSLLCRPVCRPACCVPVPSCCVPASSCQPSCCHPA 243
>PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33| Length = 498 Score = 29.6 bits (65), Expect = 5.3 Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 2/88 (2%) Frame = -3 Query: 520 PVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQP- 344 P G+G + FG G VA T AGFGG G G + G G G + Sbjct: 153 PGGNGGAAGLFGNGGAGGAGGNVASGT------AGFGGAGGAGGLLYGAGGAGGAGGRAG 206 Query: 343 -LVDNSPYDSGAPKHGCSLLGIGVALGV 263 V GA +G L G G A GV Sbjct: 207 GGVGGIGGAGGAGGNGGLLFGAGGAGGV 234
>K2C6C_HUMAN (P48666) Keratin, type II cytoskeletal 6C (Cytokeratin-6C) (CK 6C)| (K6c keratin) Length = 563 Score = 29.6 bits (65), Expect = 5.3 Identities = 26/82 (31%), Positives = 36/82 (43%) Frame = -3 Query: 481 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 302 E G N V Q T+ ++G+GG +G VG +G G S Y G+ Sbjct: 478 EGVGQVNISVVQSTV----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 518 Query: 301 GCSLLGIGVALGVSSAIGMALG 236 G+GV G SS+ G A+G Sbjct: 519 -----GLGVGGGFSSSSGRAIG 535
>K2C6A_HUMAN (P02538) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)| (K6a keratin) Length = 563 Score = 29.6 bits (65), Expect = 5.3 Identities = 26/82 (31%), Positives = 36/82 (43%) Frame = -3 Query: 481 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 302 E G N V Q T+ ++G+GG +G VG +G G S Y G+ Sbjct: 478 EGVGQVNISVVQSTV----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 518 Query: 301 GCSLLGIGVALGVSSAIGMALG 236 G+GV G SS+ G A+G Sbjct: 519 -----GLGVGGGFSSSSGRAIG 535
>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 29.3 bits (64), Expect = 6.9 Identities = 31/92 (33%), Positives = 40/92 (43%) Frame = -3 Query: 511 HGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDN 332 +G+ N G + GNG G P + EA G GG G G +++ T G G Sbjct: 393 NGTDNSGNGNQTGGNGGPG---PAGGVGEAGGVGGQGGLGESLDGNDGTGGKGGAG--GT 447 Query: 331 SPYDSGAPKHGCSLLGIGVALGVSSAIGMALG 236 + D GA G GIG G SA G+A G Sbjct: 448 AGTDGGAGGAG-GAGGIGETDG--SAGGVATG 476
>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 29.3 bits (64), Expect = 6.9 Identities = 31/92 (33%), Positives = 40/92 (43%) Frame = -3 Query: 511 HGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDN 332 +G+ N G + GNG G P + EA G GG G G +++ T G G Sbjct: 393 NGTDNSGNGNQTGGNGGPG---PAGGVGEAGGVGGQGGLGESLDGNDGTGGKGGAG--GT 447 Query: 331 SPYDSGAPKHGCSLLGIGVALGVSSAIGMALG 236 + D GA G GIG G SA G+A G Sbjct: 448 AGTDGGAGGAG-GAGGIGETDG--SAGGVATG 476
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = -2 Query: 377 RGADDWIWQPTIGGQQPIRQRCAEAWMQLAWHRSCAGCQLCHWHGPRSLICVRALLRRC 201 RG D + P +G + CA+ + L W + C+L G + +C + LR+C Sbjct: 2 RGGRDPVPVPVLGDYAMV---CAKNGIILQWRYNVKECELSCTGGQQYTVCADSCLRKC 57
>FLCN_XENTR (Q5M7Q1) Folliculin| Length = 579 Score = 29.3 bits (64), Expect = 6.9 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -2 Query: 266 CQLCHWHGPRSLICVRAL 213 C C HGPR+L C AL Sbjct: 8 CHFCELHGPRTLFCTEAL 25
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 29.3 bits (64), Expect = 6.9 Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 13/81 (16%) Frame = -3 Query: 514 GHGSSNLPFGQEP-EGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVE------------DV 374 G+ F QEP NG + TLPL AG G A VE D Sbjct: 2635 GNDQPGPSFKQEPPSANGKGPFPRRTLPLEPGAGRNGAAHDALCVEVLKTSAGLGLSLDG 2694 Query: 373 GQTIGFGSQPLVDNSPYDSGA 311 G++ G PLV Y GA Sbjct: 2695 GKSSVSGEGPLVIKRVYKGGA 2715
>ITA2B_MOUSE (Q9QUM0) Integrin alpha-IIb precursor (Platelet membrane| glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen) [Contains: Integrin alpha-IIb heavy chain; Integrin alpha-IIb light chain] Length = 1033 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = -3 Query: 424 AAGFGGVAGQGHAVEDVGQTIGFGSQP-LVDNSPYDSGAPKHGCSLLG 284 AA +GG +GQG + +GQ+ G +P V +SP+ +G+ G SL G Sbjct: 407 AAPYGGPSGQGQVLIFLGQSEGLSPRPSQVLDSPFPTGS-GFGFSLRG 453
>NFKB2_HUMAN (Q00653) Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor| KBF2) (H2TF1) (Lymphocyte translocation chromosome 10) (Oncogene Lyt-10) (Lyt10) [Contains: Nuclear factor NF-kappa-B p52 subunit] Length = 899 Score = 29.3 bits (64), Expect = 6.9 Identities = 23/66 (34%), Positives = 27/66 (40%) Frame = -3 Query: 493 PFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSG 314 PFG G +G A A G+GG G G ++GF L SPY SG Sbjct: 349 PFGGGSHMGGGSGGA--------AGGYGGAGGGG--------SLGFFPSSLA-YSPYQSG 391 Query: 313 APKHGC 296 A GC Sbjct: 392 AGPMGC 397
>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (DNup214) Length = 1711 Score = 28.9 bits (63), Expect = 9.0 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 14/72 (19%) Frame = -3 Query: 472 GNGNTGVAQPTLPLPEAAGFGGVAGQ--GHAVEDVG---------QTI---GFGSQPLVD 335 G+ + G T P GFGG GQ G +V G QT GFG++P+ Sbjct: 1565 GSSSGGFGSFTQTTPAQGGFGGGFGQGGGGSVAQTGFGSPQAPQQQTTTPGGFGAKPVFG 1624 Query: 334 NSPYDSGAPKHG 299 SP +P G Sbjct: 1625 GSPAFGASPTFG 1636
>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated| protein 10.4) (High sulfur keratin-associated protein 10.4) (Keratin-associated protein 18-4) (Keratin-associated protein 18.4) Length = 401 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%) Frame = +1 Query: 247 CQWQS*HPAQLRCQASCIHASAHR-------CRMGCCPPMVGCQIQSSAPRPPLHAPA 399 CQ S PA C SC S+ CR CC P+ C +S+ +P PA Sbjct: 340 CQQSSCQPAC--CTTSCCRPSSSVSLLCRPVCRPACCVPVPSCCAPTSSCQPSCCRPA 395
>CLCE_ARATH (Q8GX93) Chloride channel protein CLC-e (AtCLC-e)| Length = 710 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/63 (28%), Positives = 30/63 (47%) Frame = -3 Query: 400 GQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKHGCSLLGIGVALGVSSAIGMALGL*FVC 221 G G+++ G ++ G+ + + +P+ G SLL G A G+SS A+ F Sbjct: 182 GTGNSLGPEGPSVEIGASIAKGVNSLFNKSPQTGFSLLAAGSAAGISSGFNAAVAGCFFA 241 Query: 220 VRS 212 V S Sbjct: 242 VES 244
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = +3 Query: 204 TPQERTHTNQRPRAMPMAELTPS-------ATPMPSKLHPCFGAPLSYGLLSTNGWLPNP 362 TP E T+T+ +++ PS ++ +PS P G+P S+G +T+ P P Sbjct: 243 TPSEGTNTSGASECESVSDKAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTP 302
>PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase| regulatory subunit 5) (PI3-kinase p101 subunit) (PtdIns-3-kinase p101) (p101-PI3K) (Phosphatidylinositol-4,5-bisphosphate 3-kinase regulatory subunit) (PtdIns-3-kinase regulato Length = 877 Score = 28.9 bits (63), Expect = 9.0 Identities = 21/50 (42%), Positives = 25/50 (50%) Frame = +1 Query: 337 PPMVGCQIQSSAPRPPLHAPAQRHHRTLPLLAAAEWAVLHRYCRCLLVPV 486 PP V CQ + PRP +PAQ LP+LA +L YCR PV Sbjct: 627 PPEVLCQSLKAEPRPLEGSPAQ-----LPILA----DMLLYYCRFAARPV 667
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = +3 Query: 204 TPQERTHTNQRPRAMPMAELTPS-------ATPMPSKLHPCFGAPLSYGLLSTNGWLPNP 362 TP E T+T+ +++ PS ++ +PS P G+P S+G +T+ P P Sbjct: 243 TPSEGTNTSGASECESVSDKAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTP 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,093,774 Number of Sequences: 219361 Number of extensions: 1942502 Number of successful extensions: 6885 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 6325 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6867 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
