Clone Name | rbart17e03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds Length = 1318 Score = 327 bits (165), Expect = 9e-87 Identities = 165/165 (100%) Strand = Plus / Minus Query: 63 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 1202 Query: 123 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 1142 Query: 183 tagcagcagatgatgcgaagactggagccactgaaccaagcggtg 227 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 tagcagcagatgatgcgaagactggagccactgaaccaagcggtg 1097
>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd Length = 1251 Score = 327 bits (165), Expect = 9e-87 Identities = 165/165 (100%) Strand = Plus / Minus Query: 63 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1181 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 1122 Query: 123 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1121 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 1062 Query: 183 tagcagcagatgatgcgaagactggagccactgaaccaagcggtg 227 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1061 tagcagcagatgatgcgaagactggagccactgaaccaagcggtg 1017 Score = 54.0 bits (27), Expect = 2e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 3 accaattctttgattaccaaattctcc 29 ||||||||||||||||||||||||||| Sbjct: 1237 accaattctttgattaccaaattctcc 1211
>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA, complete cds Length = 1235 Score = 230 bits (116), Expect = 1e-57 Identities = 135/140 (96%), Gaps = 1/140 (0%) Strand = Plus / Minus Query: 79 agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaaacacgtcgacat 138 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct: 1145 agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaa-cacgtcgacgt 1087 Query: 139 acgaatggacggtcacatcaacatatgcacaagccgaggaacggtagcagcagatgatgc 198 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct: 1086 acgaatggacggtcacatcgacatatgcacaagccgaggaacggtagcagctgatgatgc 1027 Query: 199 gaagactggagccactgaac 218 ||||||||||||||||||| Sbjct: 1026 aaagactggagccactgaac 1007
>gb|AC185988.2| Pan troglodytes BAC clone CH251-398L15 from chromosome 6, complete sequence Length = 148530 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 aaagaaaagcacacttggaagaaac 96 |||||||| |||||||||||||||| Sbjct: 110966 aaagaaaaacacacttggaagaaac 110990
>emb|AL590236.8| Human DNA sequence from clone RP11-145I17 on chromosome Xq21.1-21.33, complete sequence Length = 79387 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 aaagaaaagcacacttggaagaaac 96 ||||||||| ||||||||||||||| Sbjct: 40318 aaagaaaagtacacttggaagaaac 40342
>emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on chromosome 6, complete sequence Length = 95430 Score = 42.1 bits (21), Expect = 0.73 Identities = 24/25 (96%) Strand = Plus / Minus Query: 72 aaagaaaagcacacttggaagaaac 96 |||||||| |||||||||||||||| Sbjct: 35576 aaagaaaaacacacttggaagaaac 35552
>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence Length = 127223 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 ggtcacatcaacatatgcaca 169 ||||||||||||||||||||| Sbjct: 33938 ggtcacatcaacatatgcaca 33958
>gb|AC119070.3| Homo sapiens BAC clone RP11-164M13 from 4, complete sequence Length = 34461 Score = 42.1 bits (21), Expect = 0.73 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 aagaaaagcacacttggaaga 93 ||||||||||||||||||||| Sbjct: 18083 aagaaaagcacacttggaaga 18063
>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete sequence Length = 149684 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tcacatcaacatatgcacaa 170 |||||||||||||||||||| Sbjct: 78375 tcacatcaacatatgcacaa 78394
>emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chromosome 13 Contains the 3' end of the gene for progesterone-induced blocking factor 1 (PIBF1), a proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 (PSMD10) pseudogene, the KLF5 gene for Kruppel-like factor 5 (intestinal)(CKLF, IKLF, BTEB2), a fatty acid binding protein 5 (psoriasis-associated) (FABP5)(EFABP, E-FABP, PAFABP, PA-FABP) pseudogene and a CpG island, complete sequence Length = 199882 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ctggagccactgaaccaagc 223 |||||||||||||||||||| Sbjct: 183049 ctggagccactgaaccaagc 183030
>gb|AC010197.7| Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151011 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 aagaaaagcacacttggaag 92 |||||||||||||||||||| Sbjct: 79101 aagaaaagcacacttggaag 79120
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 accaattctttgattaccaaattc 26 |||||||||||| ||||||||||| Sbjct: 4045030 accaattctttgcttaccaaattc 4045007
>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence Length = 158692 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 aaagaaaagcacacttggaagaaa 95 ||||||||| |||||||||||||| Sbjct: 56776 aaagaaaagtacacttggaagaaa 56799
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 accaattctttgattaccaaattc 26 |||||||||||| ||||||||||| Sbjct: 37888 accaattctttgcttaccaaattc 37865 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,770,611 Number of Sequences: 3902068 Number of extensions: 1770611 Number of successful extensions: 117240 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117181 Number of HSP's gapped (non-prelim): 58 length of query: 227 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 205 effective length of database: 17,147,199,772 effective search space: 3515175953260 effective search space used: 3515175953260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)