ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin,... 327 9e-87
2dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd 327 9e-87
3gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrins... 230 1e-57
4gb|AC185988.2| Pan troglodytes BAC clone CH251-398L15 from chrom... 42 0.73
5emb|AL590236.8| Human DNA sequence from clone RP11-145I17 on chr... 42 0.73
6emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on ch... 42 0.73
7gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete... 42 0.73
8gb|AC119070.3| Homo sapiens BAC clone RP11-164M13 from 4, comple... 42 0.73
9emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chr... 40 2.9
10emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chr... 40 2.9
11gb|AC010197.7| Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (R... 40 2.9
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
13gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, compl... 40 2.9
14dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9

>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds
          Length = 1318

 Score =  327 bits (165), Expect = 9e-87
 Identities = 165/165 (100%)
 Strand = Plus / Minus

                                                                        
Query: 63   gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 1202

                                                                        
Query: 123  ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 1142

                                                         
Query: 183  tagcagcagatgatgcgaagactggagccactgaaccaagcggtg 227
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tagcagcagatgatgcgaagactggagccactgaaccaagcggtg 1097



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>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd
          Length = 1251

 Score =  327 bits (165), Expect = 9e-87
 Identities = 165/165 (100%)
 Strand = Plus / Minus

                                                                        
Query: 63   gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 gagcgagcaaaagaaaagcacacttggaagaaacagcagcaagcaaacatggcgaactcc 1122

                                                                        
Query: 123  ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 ggaaacacgtcgacatacgaatggacggtcacatcaacatatgcacaagccgaggaacgg 1062

                                                         
Query: 183  tagcagcagatgatgcgaagactggagccactgaaccaagcggtg 227
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 tagcagcagatgatgcgaagactggagccactgaaccaagcggtg 1017



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 3    accaattctttgattaccaaattctcc 29
            |||||||||||||||||||||||||||
Sbjct: 1237 accaattctttgattaccaaattctcc 1211



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>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA,
            complete cds
          Length = 1235

 Score =  230 bits (116), Expect = 1e-57
 Identities = 135/140 (96%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                        
Query: 79   agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaaacacgtcgacat 138
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 1145 agcacacttggaagaaacagcagcaagcaaacatggcgaactccggaa-cacgtcgacgt 1087

                                                                        
Query: 139  acgaatggacggtcacatcaacatatgcacaagccgaggaacggtagcagcagatgatgc 198
            ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1086 acgaatggacggtcacatcgacatatgcacaagccgaggaacggtagcagctgatgatgc 1027

                                
Query: 199  gaagactggagccactgaac 218
             |||||||||||||||||||
Sbjct: 1026 aaagactggagccactgaac 1007



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>gb|AC185988.2| Pan troglodytes BAC clone CH251-398L15 from chromosome 6, complete
              sequence
          Length = 148530

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 72     aaagaaaagcacacttggaagaaac 96
              |||||||| ||||||||||||||||
Sbjct: 110966 aaagaaaaacacacttggaagaaac 110990



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>emb|AL590236.8| Human DNA sequence from clone RP11-145I17 on chromosome Xq21.1-21.33,
             complete sequence
          Length = 79387

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 72    aaagaaaagcacacttggaagaaac 96
             ||||||||| |||||||||||||||
Sbjct: 40318 aaagaaaagtacacttggaagaaac 40342



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>emb|AL353153.18| Human DNA sequence from clone RP5-1000G17 on chromosome 6, complete
             sequence
          Length = 95430

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 72    aaagaaaagcacacttggaagaaac 96
             |||||||| ||||||||||||||||
Sbjct: 35576 aaagaaaaacacacttggaagaaac 35552



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>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence
          Length = 127223

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   ggtcacatcaacatatgcaca 169
             |||||||||||||||||||||
Sbjct: 33938 ggtcacatcaacatatgcaca 33958



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>gb|AC119070.3| Homo sapiens BAC clone RP11-164M13 from 4, complete sequence
          Length = 34461

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 73    aagaaaagcacacttggaaga 93
             |||||||||||||||||||||
Sbjct: 18083 aagaaaagcacacttggaaga 18063



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>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete
             sequence
          Length = 149684

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   tcacatcaacatatgcacaa 170
             ||||||||||||||||||||
Sbjct: 78375 tcacatcaacatatgcacaa 78394



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>emb|AL354720.14| Human DNA sequence from clone RP11-505F3 on chromosome 13 Contains the 3'
              end of the gene for progesterone-induced blocking factor 1
              (PIBF1), a proteasome (prosome, macropain) 26S subunit,
              non-ATPase, 10 (PSMD10) pseudogene, the KLF5 gene for
              Kruppel-like factor 5 (intestinal)(CKLF, IKLF, BTEB2), a
              fatty acid binding protein 5 (psoriasis-associated)
              (FABP5)(EFABP, E-FABP, PAFABP, PA-FABP) pseudogene and a
              CpG island, complete sequence
          Length = 199882

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    ctggagccactgaaccaagc 223
              ||||||||||||||||||||
Sbjct: 183049 ctggagccactgaaccaagc 183030



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>gb|AC010197.7| Homo sapiens 12p12p11-37.2-54.4 BAC RP11-92H16 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 151011

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aagaaaagcacacttggaag 92
             ||||||||||||||||||||
Sbjct: 79101 aagaaaagcacacttggaag 79120



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 3       accaattctttgattaccaaattc 26
               |||||||||||| |||||||||||
Sbjct: 4045030 accaattctttgcttaccaaattc 4045007



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>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence
          Length = 158692

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    aaagaaaagcacacttggaagaaa 95
             ||||||||| ||||||||||||||
Sbjct: 56776 aaagaaaagtacacttggaagaaa 56799



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>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534H07
          Length = 144689

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     accaattctttgattaccaaattc 26
             |||||||||||| |||||||||||
Sbjct: 37888 accaattctttgcttaccaaattc 37865


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,770,611
Number of Sequences: 3902068
Number of extensions: 1770611
Number of successful extensions: 117240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117181
Number of HSP's gapped (non-prelim): 58
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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