ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart17e02 |
|---|---|
| Clone Library Name | barley_pub |
>NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor (EC 3.4.23.-)| (Nepenthesin-I) Length = 437 Score = 30.4 bits (67), Expect = 1.0 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = -1 Query: 397 LDSGSGALCLTV-MGSRGLSXXXXXXXXXXXFVYDVGENTLSFAPVQC 257 + +G +CL + S+G+S VYD G + +SFA QC Sbjct: 387 ISPSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434
>ZMY11_MOUSE (Q8R5C8) Zinc finger MYND domain-containing protein 11| Length = 562 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +2 Query: 32 SMAYPIIP*PIHACRVATETS*LNVASTQLIDPATHSTAYEHGMHACTDRHT 187 S P +P PI V+T+T L+ +S +++ +T +T+ C D++T Sbjct: 381 SQEIPTMPQPIERVSVSTQTKKLSASSPRMLHRSTQTTSDGVCQSMCHDKYT 432
>HERC2_HUMAN (O95714) HECT domain and RCC1-like domain-containing protein 2| Length = 4834 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = -1 Query: 220 YRQYVVDGLVVGVSIRACMHAVFICRGVRGRVDQLRACYV*LARLGRYSTCMDGSWNYRI 41 Y YV + + VG+ +R C +C G G+V + L R G + + W + Sbjct: 2563 YAVYVRENIQVGMMVRCCRAYEEVCEGDVGKV-------IKLDRDGLHDLNVQCDWQQKG 2615 Query: 40 GHGWMIRWIRV 8 G W +R+I V Sbjct: 2616 GTYW-VRYIHV 2625
>HERC2_MOUSE (Q4U2R1) HECT domain and RCC1-like domain-containing protein 2| Length = 4836 Score = 29.3 bits (64), Expect = 2.3 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = -1 Query: 220 YRQYVVDGLVVGVSIRACMHAVFICRGVRGRVDQLRACYV*LARLGRYSTCMDGSWNYRI 41 Y YV + + VG+ +R C +C G G+V + L R G + + W + Sbjct: 2564 YAVYVRENVQVGMMVRCCRTYEEVCEGDVGKV-------IKLDRDGLHDLNVQCDWQQKG 2616 Query: 40 GHGWMIRWIRV 8 G W +R+I V Sbjct: 2617 GTYW-VRYIHV 2626
>CATA2_ORYSA (P55309) Catalase isozyme B (EC 1.11.1.6) (CAT-B)| Length = 492 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +3 Query: 186 PTTNPSTTYWRYNTGTHVRTHNSAHCTGAKERVFSPTSYTNWMFCCWKLPMMDRPRDPIT 365 P++ ++T+W N+G V +NSA G + + + KL DR R P Sbjct: 8 PSSGSNSTFWTTNSGAPVWNNNSALTVGERGPILLEDYH-----LIEKLAQFDRERIPER 62 Query: 366 VRHS 377 V H+ Sbjct: 63 VVHA 66
>ZMY11_HUMAN (Q15326) Zinc finger MYND domain-containing protein 11 (Adenovirus| 5 E1A-binding protein) (BS69 protein) Length = 562 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +2 Query: 32 SMAYPIIP*PIHACRVATETS*LNVASTQLIDPATHSTAYEHGMHACTDRHT 187 S P +P PI V+T+T L+ +S +++ +T +T C D++T Sbjct: 381 SQEIPTMPQPIEKVSVSTQTKKLSASSPRMLHRSTQTTNDGVCQSMCHDKYT 432
>F262_MOUSE (P70265) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2| (6PF-2-K/Fru-2,6-P2ASE heart-type isozyme) (PFK-2/FBPase-2) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] Length = 519 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -3 Query: 347 PVHHRQLPAAEHPVRVRRGREHPLLRARAVRRIVSTYVGAGVVPPIR 207 P H+ P ++ PVR+RR PL + +RR + VG+ + P++ Sbjct: 452 PTHN--FPKSQTPVRMRRNSFTPLSSSNTIRRPRNYSVGSRPLKPLK 496
>CATA2_WHEAT (P55313) Catalase (EC 1.11.1.6)| Length = 492 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = +3 Query: 186 PTTNPSTTYWRYNTGTHVRTHNSAHCTGAKERVFSPTSYTNWMFCCWKLPMMDRPRDPIT 365 PT+ ++ YW N+G V +N+A G + + + KL DR R P Sbjct: 8 PTSGANSAYWTTNSGAPVWNNNNALTVGHRGPILLEDYH-----LIEKLAQFDRERIPER 62 Query: 366 VRHS 377 V H+ Sbjct: 63 VVHA 66
>CATA1_HORVU (P55307) Catalase isozyme 1 (EC 1.11.1.6)| Length = 492 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = +3 Query: 186 PTTNPSTTYWRYNTGTHVRTHNSAHCTGAKERVFSPTSYTNWMFCCWKLPMMDRPRDPIT 365 PT+ ++ YW N+G V +N+A G + + + KL DR R P Sbjct: 8 PTSGANSAYWTTNSGAPVWNNNNALTVGHRGPILLEDYH-----LIEKLAQFDRERIPER 62 Query: 366 VRHS 377 V H+ Sbjct: 63 VVHA 66
>MA2B1_MOUSE (O09159) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1013 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/32 (34%), Positives = 15/32 (46%) Frame = +3 Query: 264 TGAKERVFSPTSYTNWMFCCWKLPMMDRPRDP 359 TG ++P Y W C P++D PR P Sbjct: 254 TGVLPNNYNPPKYLCWDVLCTDPPVVDNPRSP 285
>SPIKE_FIPV (P10033) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1452 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = +3 Query: 207 TYWRYNTGTHVRTHNSA----HCTGAKERVFSPTS 299 TY++ N ++T+ HCTG VF+PTS Sbjct: 236 TYYKLNNTNGLKTYELCEDYEHCTGYATNVFAPTS 270
>DNAE2_PSEAE (Q9I5Q2) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1031 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%) Frame = -3 Query: 221 VPPIRCGWI-----SRRCVDPCMHACRVHMPWS 138 +PP+ CG + RR + CM A R H+P S Sbjct: 179 LPPVACGDVHMHARGRRALQDCMTAIRNHLPVS 211
>NODB_RHIGA (P50354) Chitooligosaccharide deacetylase (EC 3.5.1.-) (Nodulation| protein B) Length = 214 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/36 (36%), Positives = 25/36 (69%) Frame = +1 Query: 19 IVSSIHGLSDNSMTHPCMSSSDRDELIKRSKHAADR 126 IVS HG+++++MTHP +++ R + ++R A+R Sbjct: 67 IVSEGHGVANHTMTHPDLATCSRPQ-VEREIDEANR 101
>F262_RAT (Q9JJH5) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2| (6PF-2-K/Fru-2,6-P2ASE heart-type isozyme) (PFK-2/FBPase-2) (RH2K) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] Length = 557 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -3 Query: 347 PVHHRQLPAAEHPVRVRRGREHPLLRARAVRRIVSTYVGAGVVPPI 210 P H+ P ++ PVR+RR PL + +RR + VG+ + P+ Sbjct: 452 PTHN--FPKSQTPVRMRRNSFTPLSSSNTIRRPRNYSVGSRPLKPL 495
>DPOL_HBVIL (P12900) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 832 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Frame = -3 Query: 353 AGPVHHRQLPAAEHPVRVRRGREHPLLRARAVRRIVSTYVGAGVVPPI-RCGWISRRCVD 177 A +H + A +P R A + I S+ G+ P+ C W+ R ++ Sbjct: 262 ASCLHQSAVRKAAYPTFSTTKRHSSSGHAVELHNISSSSAGSQSKGPVFSCWWLQFRNIE 321 Query: 176 PCMHACRVHM 147 PC C H+ Sbjct: 322 PCSEYCLSHL 331
>CU077_PANTR (Q68US2) Protein C21orf77 homolog| Length = 126 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 8/45 (17%) Frame = -3 Query: 242 TYVGAGVVPPIRCGWISRRC--------VDPCMHACRVHMPWSAW 132 TY+G P W+S RC + AC H PW+AW Sbjct: 66 TYLGKETEP---IWWLSLRCGRASGVALMHSTAQACGHHSPWAAW 107
>CATA2_MAIZE (P12365) Catalase isozyme 2 (EC 1.11.1.6)| Length = 491 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +3 Query: 186 PTTNPSTTYWRYNTGTHVRTHNSAHCTGAKERVFSPTSYTNWMFCCWKLPMMDRPRDPIT 365 P++ + YW N+G V ++S+ GA+ + + C KL DR R P Sbjct: 8 PSSAFNAPYWTTNSGAPVWNNDSSLTVGARGPILLED------YHCEKLANFDRERIPER 61 Query: 366 VRHS 377 V H+ Sbjct: 62 VVHA 65
>CCAR1_XENLA (Q641G3) Cell division cycle and apoptosis regulator protein 1| Length = 1157 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -3 Query: 344 VHHRQLPAAEHPVRVRRGREHPLLRARAVRRIV 246 ++H+ AE P+ VR G +HP AR ++ +V Sbjct: 467 LYHKSCALAEDPIEVREGFQHP---ARLIKFLV 496
>LYTH_STAHJ (Q4L6X7) Probable cell-wall amidase lytH precursor (EC 3.5.1.-)| Length = 291 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 8/74 (10%) Frame = +3 Query: 177 IDTPTTNPSTTYWRYNT--------GTHVRTHNSAHCTGAKERVFSPTSYTNWMFCCWKL 332 +D+P N +T YW N T+++ G ++ F TN +L Sbjct: 197 LDSPNANGATVYWYKNNQEALAETLNTNIQKKAMLFNRGTRQENFQVLRQTNKPAVLLEL 256 Query: 333 PMMDRPRDPITVRH 374 + P D + +R+ Sbjct: 257 GYISNPTDEVMIRN 270
>RS0_PNECA (Q01661) 40S ribosomal protein S0 (Extracellular matrix receptor| protein) Length = 295 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +3 Query: 246 HNSAHCTGAKERV---FSPTSYTNWMFCCWKLPMMDRPRDPIT 365 H A TGA+E + F+P S+TN++ +K P + DP T Sbjct: 85 HKYALHTGAREAISSRFTPGSFTNYITRSYKEPRLIIVTDPRT 127
>CATA1_MAIZE (P18122) Catalase isozyme 1 (EC 1.11.1.6)| Length = 492 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = +3 Query: 186 PTTNPSTTYWRYNTGTHVRTHNSAHCTGAKERVFSPTSYTNWMFCCWKLPMMDRPRDPIT 365 P++ ++++W N+G V +NSA G + + + KL DR R P Sbjct: 8 PSSGSNSSFWTTNSGAPVWNNNSALTVGQRGPILLEDYH-----LIEKLAQFDRERIPER 62 Query: 366 VRHS 377 V H+ Sbjct: 63 VVHA 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,674,737 Number of Sequences: 219361 Number of extensions: 1298940 Number of successful extensions: 3944 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3940 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
