Clone Name | rbart17d12 |
---|---|
Clone Library Name | barley_pub |
>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle| protein 1) Length = 285 Score = 38.1 bits (87), Expect = 0.015 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = -1 Query: 212 NSSSLPASSQPTLPGHHNREYLDGDQPGGMSRKPSGEHIAAEAGVRSH 69 ++ S AS +P GH E+ G+QP G +PSGEH++ E + H Sbjct: 88 HAESEHASGEPAATGHAEGEHTVGEQPSG--EQPSGEHLSGEQSLGEH 133 Score = 31.6 bits (70), Expect = 1.4 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Frame = -1 Query: 272 EPYGNSDRNNMSSDDQRLLRNSSSLPASSQPTLPGHH------NREYLDGDQPGGMSRKP 111 +P G S +Q L ++S S + L G H + E+ G+QP G +P Sbjct: 113 QPSGEQPSGEHLSGEQSLGEHASGEQPSDEQ-LSGEHASGEQPSGEHASGEQPSG--EQP 169 Query: 110 SGEHIAAEAGVRSH 69 SGEH + E + H Sbjct: 170 SGEHASGEQSLGEH 183
>YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C19G12.16c| precursor Length = 670 Score = 36.2 bits (82), Expect = 0.055 Identities = 35/140 (25%), Positives = 50/140 (35%), Gaps = 17/140 (12%) Frame = -2 Query: 424 ILPTSPYTMKSMPTFSSHVH-TETLTFLSAAARGQRPQTKLLQAAWIRTVPSSPTETRTG 248 I+PT+ T S+ +FSS T + + SA + +T T P T T T Sbjct: 517 IVPTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTT 576 Query: 247 ITCHQMTKGCSATXXXXXXXXXXXXLAITIGSTW----------------METSPVACPE 116 TC + +T + +I ST+ + +S Sbjct: 577 TTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHSSS 636 Query: 115 SRQGSTSLPRLACDLTSLHR 56 SR S SLP A TSL R Sbjct: 637 SRSSSMSLPPSAGSSTSLQR 656
>ASPX_HUMAN (P26436) Acrosomal protein SP-10 precursor (Acrosomal vesicle| protein 1) Length = 265 Score = 34.3 bits (77), Expect = 0.21 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Frame = -1 Query: 326 SEAANQTSSGGLDQDRAVEPYGNSDRNNMSSD--DQRLLRNSSSLPASSQPTLPGHHNRE 153 +EA +TSSG + +G+S+ + + ++ S AS +P H E Sbjct: 52 AEALYETSSGL----NTLSEHGSSEHGSSKHTVAEHTSGEHAESEHASGEPAATEHAEGE 107 Query: 152 YLDGDQPGGMSRKPSGEHIAAE 87 + G+QP G +PSGEH++ E Sbjct: 108 HTVGEQPSG--EQPSGEHLSGE 127
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 32.3 bits (72), Expect = 0.80 Identities = 30/136 (22%), Positives = 48/136 (35%) Frame = -2 Query: 415 TSPYTMKSMPTFSSHVHTETLTFLSAAARGQRPQTKLLQAAWIRTVPSSPTETRTGITCH 236 TSP T S P S+H + + T +++ + A+ ++P+S T T T T Sbjct: 55 TSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTS-TSTETTTTTP 113 Query: 235 QMTKGCSATXXXXXXXXXXXXLAITIGSTWMETSPVACPESRQGSTSLPRLACDLTSLHR 56 + T T ST ET+ + +T+ P T+ Sbjct: 114 TASTTTPTTTTAAPTTAATTTAVTTAASTSAETTTATATATSTPTTTTP--TSTTTTTAT 171 Query: 55 RRVPSRRLGTATTCLA 8 VP+ T T A Sbjct: 172 TTVPTTASTTTDTTTA 187
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 32.3 bits (72), Expect = 0.80 Identities = 30/136 (22%), Positives = 48/136 (35%) Frame = -2 Query: 415 TSPYTMKSMPTFSSHVHTETLTFLSAAARGQRPQTKLLQAAWIRTVPSSPTETRTGITCH 236 TSP T S P S+H + + T +++ + A+ ++P+S T T T T Sbjct: 55 TSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTS-TSTETTTTTP 113 Query: 235 QMTKGCSATXXXXXXXXXXXXLAITIGSTWMETSPVACPESRQGSTSLPRLACDLTSLHR 56 + T T ST ET+ + +T+ P T+ Sbjct: 114 TASTTTPTTTTAAPTTAATTTAVTTAASTSAETTTATATATSTPTTTTP--TSTTTTTAT 171 Query: 55 RRVPSRRLGTATTCLA 8 VP+ T T A Sbjct: 172 TTVPTTASTTTDTTTA 187
>DACH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1)| Length = 751 Score = 32.3 bits (72), Expect = 0.80 Identities = 25/84 (29%), Positives = 40/84 (47%) Frame = -2 Query: 514 PYYYY*HSTLPPHITNQPTLPLFYSLI*DQILPTSPYTMKSMPTFSSHVHTETLTFLSAA 335 P + HS LPP+ P + + + LI LP + TM S H T+ ++AA Sbjct: 408 PLNHLQHSHLPPNGLELPFMMMPHPLI-PVSLPPASVTM----AMSQMNHLSTIANMAAA 462 Query: 334 ARGQRPQTKLLQAAWIRTVPSSPT 263 A+ Q P +++ + VP SP+ Sbjct: 463 AQVQSPPSRVETSVIKERVPDSPS 486
>ICEN_PSESY (P06620) Ice nucleation protein| Length = 1200 Score = 32.0 bits (71), Expect = 1.0 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -1 Query: 257 SDRNNMSSDDQRLLR-NSSSLPASSQPTLPGHHNREYLDGDQPGGMSRKPSGEHIAAEAG 81 +D N + D +LL N+S L A + L G H+ + GDQ SR +G++ AG Sbjct: 1074 ADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQ----SRLTAGKNSVLTAG 1129 Query: 80 VRS 72 RS Sbjct: 1130 ARS 1132
>ICEK_PSESX (O30611) Ice nucleation protein| Length = 1148 Score = 32.0 bits (71), Expect = 1.0 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -1 Query: 257 SDRNNMSSDDQRLLR-NSSSLPASSQPTLPGHHNREYLDGDQPGGMSRKPSGEHIAAEAG 81 +D N + D +LL N+S L A + L G H+ + GDQ SR +G++ AG Sbjct: 1022 ADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQ----SRLTAGKNSVLTAG 1077 Query: 80 VRS 72 RS Sbjct: 1078 ARS 1080
>ICEV_PSESX (O33479) Ice nucleation protein| Length = 1196 Score = 31.6 bits (70), Expect = 1.4 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -1 Query: 257 SDRNNMSSDDQRLLR-NSSSLPASSQPTLPGHHNREYLDGDQPGGMSRKPSGEHIAAEAG 81 +D N + D +LL N+S L A + L G H+ + GDQ SR +G++ AG Sbjct: 1070 ADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQ----SRLTAGKNSILTAG 1125 Query: 80 VRS 72 RS Sbjct: 1126 ARS 1128
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.4 bits (67), Expect = 3.0 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 12/118 (10%) Frame = -2 Query: 415 TSPYTMKSMPTFSSHVHTETLTFLSA------AARGQRPQTKLLQAAWIRTV-PSSP--- 266 +SP T ++P +S T T ++ G P+ A + T+ PSS Sbjct: 4242 SSPRTATTLPVLTSTATKSTATSVTPIPSSTLGTTGTLPEQTTTPVATMSTIHPSSTPET 4301 Query: 265 TETRTGITCHQMTKGCSATXXXXXXXXXX--XXLAITIGSTWMETSPVACPESRQGST 98 T T T +T T+ S+T T +T T P A P S G+T Sbjct: 4302 THTSTVLTTKATTRATSSTSTPSSTPGTTWILTELTTAATTTAGTGPTATPSSTPGTT 4359 Score = 28.9 bits (63), Expect = 8.9 Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 4/121 (3%) Frame = -2 Query: 358 TLTFLSAAARGQRPQTKLLQAAWIRTVPSSPTETRTGITCHQMTKGCSATXXXXXXXXXX 179 TL S A P T WI T P++ T T T T G +AT Sbjct: 1889 TLATSSTATPSSTPGT-----TWILTKPTT-TATTTAST------GSTATASSTQATAGT 1936 Query: 178 XXLAITIGSTWMETSPVACPESRQGS-TSLPRL---ACDLTSLHRRRVPSRRLGTATTCL 11 ++ T +T TS A P S G+ T+LP L A T+ +PS LGT T L Sbjct: 1937 PHVSTT-ATTPTVTSSKATPFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRL 1995 Query: 10 A 8 + Sbjct: 1996 S 1996
>ADP1_MYCGE (P20796) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)| (MgPa) Length = 1444 Score = 30.4 bits (67), Expect = 3.0 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 10/117 (8%) Frame = -1 Query: 491 NTAPPYNQSTNASPLLFTYIRPDFTNFT----------LHNEINAYIFFPCPHRDTNFFI 342 N+ P +++++PL P F+N L+ E ++F P + + + Sbjct: 779 NSPSPSTSASSSTPL------PTFSNINVGVKSMITQHLNKENTRWVFIP--NFSPDIWT 830 Query: 341 CCCQRSEAANQTSSGGLDQDRAVEPYGNSDRNNMSSDDQRLLRNSSSLPASSQPTLP 171 R ++ANQ + +Q V+P NS + +SDD ++ + S ++ P LP Sbjct: 831 GAGYRVQSANQKNGIPFEQ---VKPSNNSTPFDPNSDDNKVTPSGGSSKPTTYPALP 884
>SUMT_SCHPO (O74468) Probable uroporphyrin-III C-methyltransferase (EC| 2.1.1.107) Length = 496 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = -2 Query: 457 LPLFYSLI*DQILPTSPYTMK-SMPTFSSHVHTETLTFLSAAARGQRPQTKLLQAAWIRT 281 +P+ + + DQ L + K SMP S V T+T FL A R + L+++ W R Sbjct: 385 IPVTHRGVADQFLVCTGTGQKGSMPKIPSFVPTQTTVFLMALHRLEILVQALIESGWPRV 444 Query: 280 VP 275 +P Sbjct: 445 LP 446
>CLCN1_CANFA (Q9MZT1) Chloride channel protein, skeletal muscle (Chloride| channel protein 1) (ClC-1) Length = 976 Score = 30.0 bits (66), Expect = 4.0 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = -1 Query: 227 QRLLRNSSSLPASSQPT-LPGHHNREYLDGDQPGGMSRK 114 Q L + L A+++PT + GH+ +++ D +Q GMS+K Sbjct: 43 QHRLHRDAGLRANTRPTQIYGHYKQQFSDKEQDTGMSKK 81
>NAPC_RHOS4 (Q53178) Cytochrome c-type protein napC| Length = 227 Score = 29.6 bits (65), Expect = 5.2 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +2 Query: 128 HRAGLHPGTPDCDGQAEWVEKKPAGKKSCGATFGHL 235 +R+G+ G PDC EW +K ++ +GHL Sbjct: 76 NRSGVRAGCPDCHVPHEWTDKIARKMQASKEVWGHL 111
>DPF3_CHICK (P58270) Zinc-finger protein DPF3 (cer-d4)| Length = 427 Score = 29.3 bits (64), Expect = 6.8 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 179 WVEKKPAGKKSCGATFGHLMTCYSCPSFRRARR-HGPDPGRLKKFGLRPLTS 331 W+EK+ G G G L T Y +R+ RR H P+ RLK ++P TS Sbjct: 56 WMEKRHRGP---GLAPGQLYT-YPARCWRKKRRLHPPEDSRLKLLEIKPETS 103
>GEI8_CAEEL (P34333) Gex-3-interacting protein 8| Length = 1780 Score = 29.3 bits (64), Expect = 6.8 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = -1 Query: 260 NSDRNNMSSDDQRLLRNSSSLPASSQPTLPG 168 NS+ +++SSDD + RN LPA+ P LPG Sbjct: 1692 NSNVSDVSSDDDDV-RNPEKLPANRLPPLPG 1721
>TBX10_HUMAN (O75333) T-box transcription factor TBX10 (T-box protein 10)| Length = 385 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 222 VAPQLFFPAGFFSTHSAWPSQSGVPGWRPARWHVP 118 +AP + P + S +S PS G+P RPA + +P Sbjct: 317 LAPATYRPVTYQSLYSGAPSHLGIPRTRPAPYPLP 351
>SSUD_BACSU (P40402) Alkanesulfonate monooxygenase (EC 1.14.14.5)| (FMNH2-dependent aliphatic sulfonate monooxygenase) Length = 376 Score = 28.9 bits (63), Expect = 8.9 Identities = 25/105 (23%), Positives = 34/105 (32%) Frame = +2 Query: 5 WR*TRCGST*SARGNATTV*RSEIARQPRQRCAPLTAFGTCHRAGLHPGTPDCDGQAEWV 184 WR G T S G V S + P+Q P FG +AG+ D W Sbjct: 137 WRRLLQGETVSYEGKHIKVENSNLLFPPQQEPHPPIYFGGSSQAGIEAAAKHTDVYLTWG 196 Query: 185 EKKPAGKKSCGATFGHLMTCYSCPSFRRARRHGPDPGRLKKFGLR 319 E K+ R ++ GR +FG+R Sbjct: 197 EPPEQVKE----------------KIERVKKQAAKEGRSVRFGIR 225
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 28.9 bits (63), Expect = 8.9 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -3 Query: 390 CLHFLPMSTQRH*LFYLLLPEVRGRKPNFFRRPGSGPCRRALRK 259 C H+ P + Q L + P++ G + +RP GPC R L++ Sbjct: 309 CAHWAPKTKQPAILVHTPGPKMPGPRQPAPKRPPPGPCYRCLKE 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,860,086 Number of Sequences: 219361 Number of extensions: 1803215 Number of successful extensions: 5548 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5328 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5542 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)