ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal... 38 0.015
2YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C... 36 0.055
3ASPX_HUMAN (P26436) Acrosomal protein SP-10 precursor (Acrosomal... 34 0.21
4VGLX_EHV1B (P28968) Glycoprotein X precursor 32 0.80
5VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor 32 0.80
6DACH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1) 32 0.80
7ICEN_PSESY (P06620) Ice nucleation protein 32 1.0
8ICEK_PSESX (O30611) Ice nucleation protein 32 1.0
9ICEV_PSESX (O33479) Ice nucleation protein 32 1.4
10MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 30 3.0
11ADP1_MYCGE (P20796) Adhesin P1 precursor (Cytadhesin P1) (Attach... 30 3.0
12SUMT_SCHPO (O74468) Probable uroporphyrin-III C-methyltransferas... 30 3.0
13CLCN1_CANFA (Q9MZT1) Chloride channel protein, skeletal muscle (... 30 4.0
14NAPC_RHOS4 (Q53178) Cytochrome c-type protein napC 30 5.2
15DPF3_CHICK (P58270) Zinc-finger protein DPF3 (cer-d4) 29 6.8
16GEI8_CAEEL (P34333) Gex-3-interacting protein 8 29 6.8
17TBX10_HUMAN (O75333) T-box transcription factor TBX10 (T-box pro... 29 6.8
18SSUD_BACSU (P40402) Alkanesulfonate monooxygenase (EC 1.14.14.5)... 29 8.9
19GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (... 29 8.9

>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle|
           protein 1)
          Length = 285

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -1

Query: 212 NSSSLPASSQPTLPGHHNREYLDGDQPGGMSRKPSGEHIAAEAGVRSH 69
           ++ S  AS +P   GH   E+  G+QP G   +PSGEH++ E  +  H
Sbjct: 88  HAESEHASGEPAATGHAEGEHTVGEQPSG--EQPSGEHLSGEQSLGEH 133



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = -1

Query: 272 EPYGNSDRNNMSSDDQRLLRNSSSLPASSQPTLPGHH------NREYLDGDQPGGMSRKP 111
           +P G        S +Q L  ++S    S +  L G H      + E+  G+QP G   +P
Sbjct: 113 QPSGEQPSGEHLSGEQSLGEHASGEQPSDEQ-LSGEHASGEQPSGEHASGEQPSG--EQP 169

Query: 110 SGEHIAAEAGVRSH 69
           SGEH + E  +  H
Sbjct: 170 SGEHASGEQSLGEH 183



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>YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C19G12.16c|
           precursor
          Length = 670

 Score = 36.2 bits (82), Expect = 0.055
 Identities = 35/140 (25%), Positives = 50/140 (35%), Gaps = 17/140 (12%)
 Frame = -2

Query: 424 ILPTSPYTMKSMPTFSSHVH-TETLTFLSAAARGQRPQTKLLQAAWIRTVPSSPTETRTG 248
           I+PT+  T  S+ +FSS    T + +  SA +     +T         T P   T T T 
Sbjct: 517 IVPTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTT 576

Query: 247 ITCHQMTKGCSATXXXXXXXXXXXXLAITIGSTW----------------METSPVACPE 116
            TC    +   +T             + +I ST+                + +S      
Sbjct: 577 TTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHSSS 636

Query: 115 SRQGSTSLPRLACDLTSLHR 56
           SR  S SLP  A   TSL R
Sbjct: 637 SRSSSMSLPPSAGSSTSLQR 656



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>ASPX_HUMAN (P26436) Acrosomal protein SP-10 precursor (Acrosomal vesicle|
           protein 1)
          Length = 265

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -1

Query: 326 SEAANQTSSGGLDQDRAVEPYGNSDRNNMSSD--DQRLLRNSSSLPASSQPTLPGHHNRE 153
           +EA  +TSSG       +  +G+S+  +      +     ++ S  AS +P    H   E
Sbjct: 52  AEALYETSSGL----NTLSEHGSSEHGSSKHTVAEHTSGEHAESEHASGEPAATEHAEGE 107

Query: 152 YLDGDQPGGMSRKPSGEHIAAE 87
           +  G+QP G   +PSGEH++ E
Sbjct: 108 HTVGEQPSG--EQPSGEHLSGE 127



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>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 30/136 (22%), Positives = 48/136 (35%)
 Frame = -2

Query: 415 TSPYTMKSMPTFSSHVHTETLTFLSAAARGQRPQTKLLQAAWIRTVPSSPTETRTGITCH 236
           TSP T  S P  S+H  + + T   +++      +    A+   ++P+S T T T  T  
Sbjct: 55  TSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTS-TSTETTTTTP 113

Query: 235 QMTKGCSATXXXXXXXXXXXXLAITIGSTWMETSPVACPESRQGSTSLPRLACDLTSLHR 56
             +     T               T  ST  ET+      +   +T+ P      T+   
Sbjct: 114 TASTTTPTTTTAAPTTAATTTAVTTAASTSAETTTATATATSTPTTTTP--TSTTTTTAT 171

Query: 55  RRVPSRRLGTATTCLA 8
             VP+    T  T  A
Sbjct: 172 TTVPTTASTTTDTTTA 187



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>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 30/136 (22%), Positives = 48/136 (35%)
 Frame = -2

Query: 415 TSPYTMKSMPTFSSHVHTETLTFLSAAARGQRPQTKLLQAAWIRTVPSSPTETRTGITCH 236
           TSP T  S P  S+H  + + T   +++      +    A+   ++P+S T T T  T  
Sbjct: 55  TSPPTTSSSPPTSTHTSSPSSTSTQSSSTAATSSSAPSTASSTTSIPTS-TSTETTTTTP 113

Query: 235 QMTKGCSATXXXXXXXXXXXXLAITIGSTWMETSPVACPESRQGSTSLPRLACDLTSLHR 56
             +     T               T  ST  ET+      +   +T+ P      T+   
Sbjct: 114 TASTTTPTTTTAAPTTAATTTAVTTAASTSAETTTATATATSTPTTTTP--TSTTTTTAT 171

Query: 55  RRVPSRRLGTATTCLA 8
             VP+    T  T  A
Sbjct: 172 TTVPTTASTTTDTTTA 187



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>DACH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1)|
          Length = 751

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 25/84 (29%), Positives = 40/84 (47%)
 Frame = -2

Query: 514 PYYYY*HSTLPPHITNQPTLPLFYSLI*DQILPTSPYTMKSMPTFSSHVHTETLTFLSAA 335
           P  +  HS LPP+    P + + + LI    LP +  TM      S   H  T+  ++AA
Sbjct: 408 PLNHLQHSHLPPNGLELPFMMMPHPLI-PVSLPPASVTM----AMSQMNHLSTIANMAAA 462

Query: 334 ARGQRPQTKLLQAAWIRTVPSSPT 263
           A+ Q P +++  +     VP SP+
Sbjct: 463 AQVQSPPSRVETSVIKERVPDSPS 486



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>ICEN_PSESY (P06620) Ice nucleation protein|
          Length = 1200

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 257  SDRNNMSSDDQRLLR-NSSSLPASSQPTLPGHHNREYLDGDQPGGMSRKPSGEHIAAEAG 81
            +D N  + D  +LL  N+S L A  +  L G H+   + GDQ    SR  +G++    AG
Sbjct: 1074 ADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQ----SRLTAGKNSVLTAG 1129

Query: 80   VRS 72
             RS
Sbjct: 1130 ARS 1132



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>ICEK_PSESX (O30611) Ice nucleation protein|
          Length = 1148

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 257  SDRNNMSSDDQRLLR-NSSSLPASSQPTLPGHHNREYLDGDQPGGMSRKPSGEHIAAEAG 81
            +D N  + D  +LL  N+S L A  +  L G H+   + GDQ    SR  +G++    AG
Sbjct: 1022 ADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQ----SRLTAGKNSVLTAG 1077

Query: 80   VRS 72
             RS
Sbjct: 1078 ARS 1080



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>ICEV_PSESX (O33479) Ice nucleation protein|
          Length = 1196

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 257  SDRNNMSSDDQRLLR-NSSSLPASSQPTLPGHHNREYLDGDQPGGMSRKPSGEHIAAEAG 81
            +D N  + D  +LL  N+S L A  +  L G H+   + GDQ    SR  +G++    AG
Sbjct: 1070 ADSNQTAGDRSKLLAGNNSYLTAGDRSKLTGGHDCTLMAGDQ----SRLTAGKNSILTAG 1125

Query: 80   VRS 72
             RS
Sbjct: 1126 ARS 1128



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 12/118 (10%)
 Frame = -2

Query: 415  TSPYTMKSMPTFSSHVHTETLTFLSA------AARGQRPQTKLLQAAWIRTV-PSSP--- 266
            +SP T  ++P  +S     T T ++          G  P+      A + T+ PSS    
Sbjct: 4242 SSPRTATTLPVLTSTATKSTATSVTPIPSSTLGTTGTLPEQTTTPVATMSTIHPSSTPET 4301

Query: 265  TETRTGITCHQMTKGCSATXXXXXXXXXX--XXLAITIGSTWMETSPVACPESRQGST 98
            T T T +T    T+  S+T                 T  +T   T P A P S  G+T
Sbjct: 4302 THTSTVLTTKATTRATSSTSTPSSTPGTTWILTELTTAATTTAGTGPTATPSSTPGTT 4359



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
 Frame = -2

Query: 358  TLTFLSAAARGQRPQTKLLQAAWIRTVPSSPTETRTGITCHQMTKGCSATXXXXXXXXXX 179
            TL   S A     P T      WI T P++ T T T  T      G +AT          
Sbjct: 1889 TLATSSTATPSSTPGT-----TWILTKPTT-TATTTAST------GSTATASSTQATAGT 1936

Query: 178  XXLAITIGSTWMETSPVACPESRQGS-TSLPRL---ACDLTSLHRRRVPSRRLGTATTCL 11
              ++ T  +T   TS  A P S  G+ T+LP L   A   T+     +PS  LGT  T L
Sbjct: 1937 PHVSTT-ATTPTVTSSKATPFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRL 1995

Query: 10   A 8
            +
Sbjct: 1996 S 1996



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>ADP1_MYCGE (P20796) Adhesin P1 precursor (Cytadhesin P1) (Attachment protein)|
            (MgPa)
          Length = 1444

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
 Frame = -1

Query: 491  NTAPPYNQSTNASPLLFTYIRPDFTNFT----------LHNEINAYIFFPCPHRDTNFFI 342
            N+  P   +++++PL      P F+N            L+ E   ++F P  +   + + 
Sbjct: 779  NSPSPSTSASSSTPL------PTFSNINVGVKSMITQHLNKENTRWVFIP--NFSPDIWT 830

Query: 341  CCCQRSEAANQTSSGGLDQDRAVEPYGNSDRNNMSSDDQRLLRNSSSLPASSQPTLP 171
                R ++ANQ +    +Q   V+P  NS   + +SDD ++  +  S   ++ P LP
Sbjct: 831  GAGYRVQSANQKNGIPFEQ---VKPSNNSTPFDPNSDDNKVTPSGGSSKPTTYPALP 884



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>SUMT_SCHPO (O74468) Probable uroporphyrin-III C-methyltransferase (EC|
           2.1.1.107)
          Length = 496

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 457 LPLFYSLI*DQILPTSPYTMK-SMPTFSSHVHTETLTFLSAAARGQRPQTKLLQAAWIRT 281
           +P+ +  + DQ L  +    K SMP   S V T+T  FL A  R +     L+++ W R 
Sbjct: 385 IPVTHRGVADQFLVCTGTGQKGSMPKIPSFVPTQTTVFLMALHRLEILVQALIESGWPRV 444

Query: 280 VP 275
           +P
Sbjct: 445 LP 446



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>CLCN1_CANFA (Q9MZT1) Chloride channel protein, skeletal muscle (Chloride|
           channel protein 1) (ClC-1)
          Length = 976

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 227 QRLLRNSSSLPASSQPT-LPGHHNREYLDGDQPGGMSRK 114
           Q  L   + L A+++PT + GH+ +++ D +Q  GMS+K
Sbjct: 43  QHRLHRDAGLRANTRPTQIYGHYKQQFSDKEQDTGMSKK 81



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>NAPC_RHOS4 (Q53178) Cytochrome c-type protein napC|
          Length = 227

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 128 HRAGLHPGTPDCDGQAEWVEKKPAGKKSCGATFGHL 235
           +R+G+  G PDC    EW +K     ++    +GHL
Sbjct: 76  NRSGVRAGCPDCHVPHEWTDKIARKMQASKEVWGHL 111



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>DPF3_CHICK (P58270) Zinc-finger protein DPF3 (cer-d4)|
          Length = 427

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 179 WVEKKPAGKKSCGATFGHLMTCYSCPSFRRARR-HGPDPGRLKKFGLRPLTS 331
           W+EK+  G    G   G L T Y    +R+ RR H P+  RLK   ++P TS
Sbjct: 56  WMEKRHRGP---GLAPGQLYT-YPARCWRKKRRLHPPEDSRLKLLEIKPETS 103



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>GEI8_CAEEL (P34333) Gex-3-interacting protein 8|
          Length = 1780

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -1

Query: 260  NSDRNNMSSDDQRLLRNSSSLPASSQPTLPG 168
            NS+ +++SSDD  + RN   LPA+  P LPG
Sbjct: 1692 NSNVSDVSSDDDDV-RNPEKLPANRLPPLPG 1721



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>TBX10_HUMAN (O75333) T-box transcription factor TBX10 (T-box protein 10)|
          Length = 385

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 222 VAPQLFFPAGFFSTHSAWPSQSGVPGWRPARWHVP 118
           +AP  + P  + S +S  PS  G+P  RPA + +P
Sbjct: 317 LAPATYRPVTYQSLYSGAPSHLGIPRTRPAPYPLP 351



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>SSUD_BACSU (P40402) Alkanesulfonate monooxygenase (EC 1.14.14.5)|
           (FMNH2-dependent aliphatic sulfonate monooxygenase)
          Length = 376

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 25/105 (23%), Positives = 34/105 (32%)
 Frame = +2

Query: 5   WR*TRCGST*SARGNATTV*RSEIARQPRQRCAPLTAFGTCHRAGLHPGTPDCDGQAEWV 184
           WR    G T S  G    V  S +   P+Q   P   FG   +AG+       D    W 
Sbjct: 137 WRRLLQGETVSYEGKHIKVENSNLLFPPQQEPHPPIYFGGSSQAGIEAAAKHTDVYLTWG 196

Query: 185 EKKPAGKKSCGATFGHLMTCYSCPSFRRARRHGPDPGRLKKFGLR 319
           E     K+                   R ++     GR  +FG+R
Sbjct: 197 EPPEQVKE----------------KIERVKKQAAKEGRSVRFGIR 225



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>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 390 CLHFLPMSTQRH*LFYLLLPEVRGRKPNFFRRPGSGPCRRALRK 259
           C H+ P + Q   L +   P++ G +    +RP  GPC R L++
Sbjct: 309 CAHWAPKTKQPAILVHTPGPKMPGPRQPAPKRPPPGPCYRCLKE 352


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,860,086
Number of Sequences: 219361
Number of extensions: 1803215
Number of successful extensions: 5548
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5542
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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