ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC010760.8| Homo sapiens chromosome , clone RP11-2F9, complet... 44 0.45
2gb|AC093808.2| Homo sapiens BAC clone RP11-342A1 from 4, complet... 44 0.45
3gb|AC097465.2| Homo sapiens BAC clone RP11-24I21 from 4, complet... 44 0.45
4gb|AC150660.4| Mus musculus BAC clone RP23-41F9 from chromosome ... 44 0.45
5gb|AC133282.7| Mus musculus chromosome 15, clone RP24-408B1, com... 44 0.45
6gb|AC135068.5| Homo sapiens chromosome 15, clone RP11-294C11, co... 44 0.45
7gb|AC134981.6| Homo sapiens chromosome 15, clone RP11-361C13, co... 44 0.45
8gb|AC134980.3| Homo sapiens chromosome 15, clone RP11-69H14, com... 44 0.45
9gb|AC171780.2| Homo sapiens chromosome 15, clone RP11-350K22, co... 44 0.45
10gb|AC171558.2| Homo sapiens chromosome 15, clone RP11-983G14, co... 44 0.45
11emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-5... 44 0.45
12gb|AC010449.7| Homo sapiens chromosome 5 clone CTD-2241P19, comp... 44 0.45
13ref|XM_642160.1| Dictyostelium discoideum hypothetical protein (... 42 1.8
14gb|AC154523.2| Mus musculus BAC clone RP24-65H12 from chromosome... 42 1.8
15gb|AC139941.9| Mus musculus chromosome 13, clone RP23-78M22, com... 42 1.8
16gb|AC138717.2| Mus musculus BAC clone RP23-268G21 from chromosom... 42 1.8
17emb|AL592504.6| Human DNA sequence from clone RP11-320J16 on chr... 42 1.8
18emb|AL445926.5| Human DNA sequence from clone RP11-439I6 on chro... 42 1.8
19gb|AC165086.4| Mus musculus BAC clone RP23-209B2 from chromosome... 42 1.8
20gb|AC090662.9| Homo sapiens chromosome 11, clone RP11-184J19, co... 42 1.8
21gb|AC079361.17| Homo sapiens 11 BAC RP11-184J19 (Roswell Park Ca... 42 1.8
22gb|AC015805.8| Homo sapiens chromosome , clone RP11-128I14, comp... 42 1.8
23gb|AC009549.6| Homo sapiens chromosome 11, clone RP11-359E10, co... 42 1.8
24emb|BX323810.8| Zebrafish DNA sequence from clone CH211-153K16 i... 42 1.8
25dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
26dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
27emb|CT476806.2| Pan troglodytes chromosome X BAC RP43-032D14, co... 42 1.8
28emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 42 1.8
29ref|XM_636944.1| Dictyostelium discoideum hypothetical protein (... 40 7.0
30ref|XM_630506.1| Dictyostelium discoideum hypothetical protein (... 40 7.0
31ref|XM_475367.1| Oryza sativa (japonica cultivar-group), predic... 40 7.0
32gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
33emb|CR381632.8| Zebrafish DNA sequence from clone DKEY-265M15 in... 40 7.0
34emb|CR352226.16| Zebrafish DNA sequence from clone CH211-209L18 ... 40 7.0
35gb|AC163161.4| Mus musculus BAC clone RP23-103A23 from chromosom... 40 7.0
36emb|AL691486.10| Human DNA sequence from clone RP11-341D24 on ch... 40 7.0
37emb|AL359195.24| Human DNA sequence from clone RP11-36D19 on chr... 40 7.0
38gb|AC159300.3| Mus musculus BAC clone RP23-242D23 from chromosom... 40 7.0
39gb|AC079322.5| Homo sapiens chromosome 15, clone RP11-1007O24, c... 40 7.0
40gb|AC087373.4| Homo sapiens chromosome 11, clone RP11-54J7, comp... 40 7.0
41gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map... 40 7.0
42gb|AC098870.3| Homo sapiens BAC clone RP11-651C19 from 4, comple... 40 7.0
43gb|AC079920.6| Homo sapiens BAC clone RP11-325K1 from 7, complet... 40 7.0
44gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.0
45gb|AC016659.39| Homo sapiens chromosome 15 clone RP11-386P20, co... 40 7.0
46ref|XM_628205.1| Cryptosporidium parvum Iowa II putative sortili... 40 7.0
47emb|BX005308.13| Zebrafish DNA sequence from clone CH211-129F5, ... 40 7.0
48gb|AC175833.2| Pan troglodytes BAC clone CH251-679G1 from chromo... 40 7.0
49gb|AC154004.7| Mus musculus 6 BAC RP24-169F24 (Roswell Park Canc... 40 7.0
50emb|BX784036.6| Zebrafish DNA sequence from clone CH211-223P14 i... 40 7.0
51dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
52gb|AC097108.5| Homo sapiens BAC clone RP11-745K4 from 4, complet... 40 7.0
53emb|BX088528.7| Zebrafish DNA sequence from clone CH211-226D23 i... 40 7.0
54emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, ... 40 7.0
55dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.0
56emb|BX004832.9| Zebrafish DNA sequence from clone CH211-89M19, c... 40 7.0
57emb|AL928999.4| Zebrafish DNA sequence from clone CH211-227C6, c... 40 7.0
58gb|AC171271.4| Mus musculus chromosome 5, clone RP24-99D19, comp... 40 7.0
59emb|AL953910.14| Zebrafish DNA sequence from clone DKEY-31E10 in... 40 7.0
60gb|AC115976.13| Mus musculus chromosome 1, clone RP24-82A12, com... 40 7.0
61dbj|AP002346.3| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 7.0
62gb|AC084071.20| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 7.0
63gb|AC084070.57| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 7.0
64gb|AC154001.5| Mus musculus 6 BAC RP24-419M4 (Roswell Park Cance... 40 7.0
65gb|AC165364.2| Mus musculus BAC clone RP23-75J20 from chromosome... 40 7.0
66gb|AC025622.3| Mus musculus chromosome 3, clone RP23-453M11, com... 40 7.0
67emb|AL450395.7| Mouse DNA sequence from clone RP23-145O4 on chro... 40 7.0 
>gb|AC010760.8| Homo sapiens chromosome , clone RP11-2F9, complete sequence
          Length = 179139

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 343    ataaaaaagttagtgtctctgt 364
              ||||||||||||||||||||||
Sbjct: 116977 ataaaaaagttagtgtctctgt 116998
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>gb|AC093808.2| Homo sapiens BAC clone RP11-342A1 from 4, complete sequence
          Length = 210837

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 181    ggttgagaagaagccggcagggaagaagag 210
              |||||||||||||||| |||| ||||||||
Sbjct: 184141 ggttgagaagaagccgacaggcaagaagag 184170
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>gb|AC097465.2| Homo sapiens BAC clone RP11-24I21 from 4, complete sequence
          Length = 172557

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 181   ggttgagaagaagccggcagggaagaagag 210
             |||||||||||||||| |||| ||||||||
Sbjct: 80878 ggttgagaagaagccgacaggcaagaagag 80907
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>gb|AC150660.4| Mus musculus BAC clone RP23-41F9 from chromosome 15, complete sequence
          Length = 229655

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 308   tttggtttgcggcctctgacctctgg 333
             |||||||||| |||||||||||||||
Sbjct: 33375 tttggtttgctgcctctgacctctgg 33400
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>gb|AC133282.7| Mus musculus chromosome 15, clone RP24-408B1, complete sequence
          Length = 183129

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 308   tttggtttgcggcctctgacctctgg 333
             |||||||||| |||||||||||||||
Sbjct: 29291 tttggtttgctgcctctgacctctgg 29266
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>gb|AC135068.5| Homo sapiens chromosome 15, clone RP11-294C11, complete sequence
          Length = 178845

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 343   ataaaaaagttagtgtctctgt 364
             ||||||||||||||||||||||
Sbjct: 56862 ataaaaaagttagtgtctctgt 56841
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>gb|AC134981.6| Homo sapiens chromosome 15, clone RP11-361C13, complete sequence
          Length = 194789

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 343   ataaaaaagttagtgtctctgt 364
             ||||||||||||||||||||||
Sbjct: 37863 ataaaaaagttagtgtctctgt 37842
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>gb|AC134980.3| Homo sapiens chromosome 15, clone RP11-69H14, complete sequence
          Length = 151383

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 343   ataaaaaagttagtgtctctgt 364
             ||||||||||||||||||||||
Sbjct: 61374 ataaaaaagttagtgtctctgt 61395
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>gb|AC171780.2| Homo sapiens chromosome 15, clone RP11-350K22, complete sequence
          Length = 192478

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 343   ataaaaaagttagtgtctctgt 364
             ||||||||||||||||||||||
Sbjct: 63840 ataaaaaagttagtgtctctgt 63861
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>gb|AC171558.2| Homo sapiens chromosome 15, clone RP11-983G14, complete sequence
          Length = 201265

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 343   ataaaaaagttagtgtctctgt 364
             ||||||||||||||||||||||
Sbjct: 92280 ataaaaaagttagtgtctctgt 92301
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>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185605

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 343   ataaaaaagttagtgtctctgt 364
             ||||||||||||||||||||||
Sbjct: 29962 ataaaaaagttagtgtctctgt 29983
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>gb|AC010449.7| Homo sapiens chromosome 5 clone CTD-2241P19, complete sequence
          Length = 80772

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 308   tttggtttgcggcctctgacctctgg 333
             |||||||||| |||||||||||||||
Sbjct: 27499 tttggtttgctgcctctgacctctgg 27474
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>ref|XM_642160.1| Dictyostelium discoideum hypothetical protein (DDB0202130), partial
            mRNA
          Length = 11340

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 492  gagtgtcaataataataataa 512
            |||||||||||||||||||||
Sbjct: 9042 gagtgtcaataataataataa 9062
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>gb|AC154523.2| Mus musculus BAC clone RP24-65H12 from chromosome 13, complete sequence
          Length = 196410

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 336   gcagcagataaaaaagttagtgtct 360
             |||||| ||||||||||||||||||
Sbjct: 57520 gcagcaaataaaaaagttagtgtct 57544
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>gb|AC139941.9| Mus musculus chromosome 13, clone RP23-78M22, complete sequence
          Length = 236536

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 336   gcagcagataaaaaagttagtgtct 360
             |||||| ||||||||||||||||||
Sbjct: 48976 gcagcaaataaaaaagttagtgtct 48952
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>gb|AC138717.2| Mus musculus BAC clone RP23-268G21 from chromosome 7, complete
            sequence
          Length = 141977

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 322  tctgacctctggcagcagcag 342
            |||||||||||||||||||||
Sbjct: 9823 tctgacctctggcagcagcag 9843
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>emb|AL592504.6| Human DNA sequence from clone RP11-320J16 on chromosome X Contains part
              of a novel gene, complete sequence
          Length = 173828

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 433    atataagtgaataaaagaggggaag 457
              ||||||||||||||||| |||||||
Sbjct: 102147 atataagtgaataaaagtggggaag 102171
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>emb|AL445926.5| Human DNA sequence from clone RP11-439I6 on chromosome 9 Contains the
             3' end of the PTPRD gene for protein tyrosine phosphatase,
             receptor type, D (HPTP, PTPD, HPTPD), complete sequence
          Length = 167253

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 372   tgggaagaaaatgtaggcatt 392
             |||||||||||||||||||||
Sbjct: 11703 tgggaagaaaatgtaggcatt 11683
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>gb|AC165086.4| Mus musculus BAC clone RP23-209B2 from chromosome 7, complete sequence
          Length = 195905

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 322   tctgacctctggcagcagcag 342
             |||||||||||||||||||||
Sbjct: 87700 tctgacctctggcagcagcag 87680
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>gb|AC090662.9| Homo sapiens chromosome 11, clone RP11-184J19, complete sequence
          Length = 177722

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 492  gagtgtcaataataataataa 512
            |||||||||||||||||||||
Sbjct: 4921 gagtgtcaataataataataa 4901
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>gb|AC079361.17| Homo sapiens 11 BAC RP11-184J19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177714

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 492    gagtgtcaataataataataa 512
              |||||||||||||||||||||
Sbjct: 172801 gagtgtcaataataataataa 172821
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>gb|AC015805.8| Homo sapiens chromosome , clone RP11-128I14, complete sequence
          Length = 13794

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 492   gagtgtcaataataataataa 512
             |||||||||||||||||||||
Sbjct: 13126 gagtgtcaataataataataa 13106
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>gb|AC009549.6| Homo sapiens chromosome 11, clone RP11-359E10, complete sequence
          Length = 180442

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 492    gagtgtcaataataataataa 512
              |||||||||||||||||||||
Sbjct: 144413 gagtgtcaataataataataa 144393
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>emb|BX323810.8| Zebrafish DNA sequence from clone CH211-153K16 in linkage group 14,
              complete sequence
          Length = 166625

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 497    tcaataataataataaggtaa 517
              |||||||||||||||||||||
Sbjct: 117152 tcaataataataataaggtaa 117132
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 39       cgagagggaacgcgacgacgg 59
                |||||||||||||||||||||
Sbjct: 17096892 cgagagggaacgcgacgacgg 17096872
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>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0571D04
          Length = 149302

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    cgagagggaacgcgacgacgg 59
             |||||||||||||||||||||
Sbjct: 50018 cgagagggaacgcgacgacgg 49998
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>emb|CT476806.2| Pan troglodytes chromosome X BAC RP43-032D14, complete sequence
          Length = 145919

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 433   atataagtgaataaaagaggggaag 457
             ||||||||||||||||| |||||||
Sbjct: 81608 atataagtgaataaaagtggggaag 81584
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 225     ttggtcatctgatgacatgtt 245
               |||||||||||||||||||||
Sbjct: 2242407 ttggtcatctgatgacatgtt 2242427
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>ref|XM_636944.1| Dictyostelium discoideum hypothetical protein (DDB0204329), partial
            mRNA
          Length = 3144

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  agtgtcaataataataataa 512
            ||||||||||||||||||||
Sbjct: 1336 agtgtcaataataataataa 1355
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>ref|XM_630506.1| Dictyostelium discoideum hypothetical protein (DDB0189011), partial
           mRNA
          Length = 1581

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 agtgtcaataataataataa 512
           ||||||||||||||||||||
Sbjct: 514 agtgtcaataataataataa 533
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>ref|XM_475367.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 375

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 185 gagaagaagccggcagggaagaag 208
           |||||||||||||||| |||||||
Sbjct: 16  gagaagaagccggcagagaagaag 39
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>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05,
             complete sequence
          Length = 163130

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 185   gagaagaagccggcagggaagaag 208
             |||||||||||||||| |||||||
Sbjct: 69462 gagaagaagccggcagagaagaag 69485
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>emb|CR381632.8| Zebrafish DNA sequence from clone DKEY-265M15 in linkage group 3,
            complete sequence
          Length = 171119

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 493  agtgtcaataataataataaggta 516
            ||||| ||||||||||||||||||
Sbjct: 5047 agtgttaataataataataaggta 5024
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>emb|CR352226.16| Zebrafish DNA sequence from clone CH211-209L18 in linkage group 22,
             complete sequence
          Length = 209197

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   agtgtcaataataataataa 512
             ||||||||||||||||||||
Sbjct: 93520 agtgtcaataataataataa 93539
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>gb|AC163161.4| Mus musculus BAC clone RP23-103A23 from chromosome 6, complete sequence
          Length = 224416

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 494    gtgtcaataataataataag 513
              ||||||||||||||||||||
Sbjct: 125074 gtgtcaataataataataag 125055
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>emb|AL691486.10| Human DNA sequence from clone RP11-341D24 on chromosome 1, complete
              sequence
          Length = 176194

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    agtgtcaataataataataa 512
              ||||||||||||||||||||
Sbjct: 151677 agtgtcaataataataataa 151658
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>emb|AL359195.24| Human DNA sequence from clone RP11-36D19 on chromosome 10 Contains part
             of a pseudogene similar to nuclear pore complex
             interacting proteins (NPIP), a eukaryotic translation
             initiation factor 5A (EIF5A) pseudogene, the MAT1A gene
             for methionine adenosyltransferase I alpha, a novel zinc
             finger protein pseudogene, three novel genes, the 5' end
             of the gene for a novel protein (MGC4248) and three CpG
             islands, complete sequence
          Length = 171148

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 374   ggaagaaaatgtaggcattgattt 397
             |||||||||| |||||||||||||
Sbjct: 43958 ggaagaaaatttaggcattgattt 43935
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>gb|AC159300.3| Mus musculus BAC clone RP23-242D23 from chromosome 6, complete sequence
          Length = 200738

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 494    gtgtcaataataataataag 513
              ||||||||||||||||||||
Sbjct: 192681 gtgtcaataataataataag 192700
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>gb|AC079322.5| Homo sapiens chromosome 15, clone RP11-1007O24, complete sequence
          Length = 171550

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 493   agtgtcaataataataataaggta 516
             ||||| ||||||||||||||||||
Sbjct: 99669 agtgttaataataataataaggta 99692
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>gb|AC087373.4| Homo sapiens chromosome 11, clone RP11-54J7, complete sequence
          Length = 200604

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   gcagcagcagataaaaaagt 352
             ||||||||||||||||||||
Sbjct: 62830 gcagcagcagataaaaaagt 62811
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>gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map CIC11A04, complete
             sequence
          Length = 81004

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   atctggtcttatataagtga 442
             ||||||||||||||||||||
Sbjct: 25487 atctggtcttatataagtga 25468
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>gb|AC098870.3| Homo sapiens BAC clone RP11-651C19 from 4, complete sequence
          Length = 163597

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   agtgtcaataataataataa 512
             ||||||||||||||||||||
Sbjct: 20725 agtgtcaataataataataa 20706
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>gb|AC079920.6| Homo sapiens BAC clone RP11-325K1 from 7, complete sequence
          Length = 130284

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   gacatgggaagaaaatgtag 387
             ||||||||||||||||||||
Sbjct: 84901 gacatgggaagaaaatgtag 84882
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 272     cgacggcacggtcctgatcc 291
               ||||||||||||||||||||
Sbjct: 1293717 cgacggcacggtcctgatcc 1293698
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>gb|AC016659.39| Homo sapiens chromosome 15 clone RP11-386P20, complete sequence
          Length = 181470

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 493   agtgtcaataataataataaggta 516
             ||||| ||||||||||||||||||
Sbjct: 67874 agtgttaataataataataaggta 67851
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>ref|XM_628205.1| Cryptosporidium parvum Iowa II putative sortilin, (cgd7_110),
           partial mRNA
          Length = 3021

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 gcagataaaaaagttagtgt 358
           ||||||||||||||||||||
Sbjct: 91  gcagataaaaaagttagtgt 110
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>emb|BX005308.13| Zebrafish DNA sequence from clone CH211-129F5, complete sequence
          Length = 168462

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 489   gttgagtgtcaataataataataa 512
             ||||||||| ||||||||||||||
Sbjct: 56994 gttgagtgtgaataataataataa 57017
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>gb|AC175833.2| Pan troglodytes BAC clone CH251-679G1 from chromosome 7, complete
            sequence
          Length = 191935

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  agtgtcaataataataataa 512
            ||||||||||||||||||||
Sbjct: 4239 agtgtcaataataataataa 4258
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>gb|AC154004.7| Mus musculus 6 BAC RP24-169F24 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 168376

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 498  caataataataataaggtaa 517
            ||||||||||||||||||||
Sbjct: 3211 caataataataataaggtaa 3230
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>emb|BX784036.6| Zebrafish DNA sequence from clone CH211-223P14 in linkage group 2,
              complete sequence
          Length = 162047

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    agtgtcaataataataataa 512
              ||||||||||||||||||||
Sbjct: 133013 agtgtcaataataataataa 132994
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 185      gagaagaagccggcagggaagaag 208
                |||||||||||||||| |||||||
Sbjct: 22480055 gagaagaagccggcagagaagaag 22480078
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>gb|AC097108.5| Homo sapiens BAC clone RP11-745K4 from 4, complete sequence
          Length = 207516

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    agtgtcaataataataataa 512
              ||||||||||||||||||||
Sbjct: 154384 agtgtcaataataataataa 154365
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>emb|BX088528.7| Zebrafish DNA sequence from clone CH211-226D23 in linkage group 1,
             complete sequence
          Length = 171618

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   gcctctgacctctggcagca 338
             ||||||||||||||||||||
Sbjct: 56442 gcctctgacctctggcagca 56423
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>emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, complete sequence
          Length = 194853

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 493   agtgtcaataataataataa 512
             ||||||||||||||||||||
Sbjct: 22709 agtgtcaataataataataa 22690
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 274     acggcacggtcctgatccaggccg 297
               ||||||| ||||||||||||||||
Sbjct: 4664559 acggcacagtcctgatccaggccg 4664582
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>emb|BX004832.9| Zebrafish DNA sequence from clone CH211-89M19, complete sequence
          Length = 190952

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 494   gtgtcaataataataataaggtaa 517
             ||||||||||||||||||| ||||
Sbjct: 15780 gtgtcaataataataataaagtaa 15757
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>emb|AL928999.4| Zebrafish DNA sequence from clone CH211-227C6, complete sequence
          Length = 169570

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 494    gtgtcaataataataataaggtaa 517
              ||||||||||||||||||| ||||
Sbjct: 148354 gtgtcaataataataataaagtaa 148377
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>gb|AC171271.4| Mus musculus chromosome 5, clone RP24-99D19, complete sequence
          Length = 170255

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    gaagccggcagggaagaaga 209
              ||||||||||||||||||||
Sbjct: 168851 gaagccggcagggaagaaga 168832
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>emb|AL953910.14| Zebrafish DNA sequence from clone DKEY-31E10 in linkage group 1,
             complete sequence
          Length = 190793

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   gcctctgacctctggcagca 338
             ||||||||||||||||||||
Sbjct: 81913 gcctctgacctctggcagca 81894
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>gb|AC115976.13| Mus musculus chromosome 1, clone RP24-82A12, complete sequence
          Length = 222238

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 499    aataataataataaggtaag 518
              ||||||||||||||||||||
Sbjct: 154647 aataataataataaggtaag 154666
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>dbj|AP002346.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2387M17, complete
             sequences
          Length = 127295

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   aataataataataaggtaag 518
             ||||||||||||||||||||
Sbjct: 47696 aataataataataaggtaag 47715
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>gb|AC084071.20| Mus musculus strain C57BL/6J chromosome 5 clone rp23-426e16, complete
              sequence
          Length = 194175

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    gaagccggcagggaagaaga 209
              ||||||||||||||||||||
Sbjct: 173659 gaagccggcagggaagaaga 173678
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>gb|AC084070.57| Mus musculus strain C57BL/6J chromosome 5 clone rp23-268d19, complete
              sequence
          Length = 347166

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    gaagccggcagggaagaaga 209
              ||||||||||||||||||||
Sbjct: 171252 gaagccggcagggaagaaga 171271
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>gb|AC154001.5| Mus musculus 6 BAC RP24-419M4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 183830

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    caataataataataaggtaa 517
              ||||||||||||||||||||
Sbjct: 135285 caataataataataaggtaa 135266
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>gb|AC165364.2| Mus musculus BAC clone RP23-75J20 from chromosome 3, complete sequence
          Length = 240679

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    tgtgatggccaggcagagtg 180
              ||||||||||||||||||||
Sbjct: 190310 tgtgatggccaggcagagtg 190291
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>gb|AC025622.3| Mus musculus chromosome 3, clone RP23-453M11, complete sequence
          Length = 182338

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   tgtgatggccaggcagagtg 180
             ||||||||||||||||||||
Sbjct: 30535 tgtgatggccaggcagagtg 30516
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>emb|AL450395.7| Mouse DNA sequence from clone RP23-145O4 on chromosome X, complete
             sequence
          Length = 198602

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   aataataataataaggtaag 518
             ||||||||||||||||||||
Sbjct: 85361 aataataataataaggtaag 85380


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,416,764
Number of Sequences: 3902068
Number of extensions: 6416764
Number of successful extensions: 973876
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 972259
Number of HSP's gapped (non-prelim): 1617
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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