ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATU2_YEAST (P38995) Copper-transporting ATPase (EC 3.6.3.4) (Cu(... 32 0.82
2RPTN_MOUSE (P97347) Repetin 30 4.1
3MYPC3_HUMAN (Q14896) Myosin-binding protein C, cardiac-type (Car... 29 9.1

>ATU2_YEAST (P38995) Copper-transporting ATPase (EC 3.6.3.4) (Cu(2+)-ATPase)|
          Length = 1004

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 87  ERNRSQLTTCYNLQGTIE-RTVTHHDDTRTWQTTILMSTSLQVTLILLHPA*PFLW 251
           ER   + T   NL  T + R ++  D+ R W+   + ST L +  +LL+   P +W
Sbjct: 224 ERTGYKFTVFSNLDNTTQLRLLSKEDEIRFWKKNSIKSTLLAIICMLLYMIVPMMW 279



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>RPTN_MOUSE (P97347) Repetin|
          Length = 1130

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 267  TSDSKCTQSEIQGSTGTGQR*AGLSTDELETDEAQQHGCQSSSPAAKQSRVQI 425
            +  S C QSEI  +   GQ    L TD    D   +H  +S   + + SR ++
Sbjct: 854  SQSSHCGQSEIGKTENQGQNRHSLGTDRTRRDSYVEHSGRSGKLSQQNSREEV 906



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>MYPC3_HUMAN (Q14896) Myosin-binding protein C, cardiac-type (Cardiac MyBP-C)|
           (C-protein, cardiac muscle isoform)
          Length = 1274

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 417 LWIASQPEKMTDSRVVVPHLFQVHQLT 337
           +W+ +  E + DSR+ V H+ +VH+LT
Sbjct: 576 VWLKNGKELVPDSRIKVSHIGRVHKLT 602


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,056,637
Number of Sequences: 219361
Number of extensions: 1321975
Number of successful extensions: 2773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2772
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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