>GYRA_TREPA (O83051) DNA gyrase subunit A (EC 5.99.1.3)|
          Length = 813

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 7   RFPIILGGGDP--SVNKTTNHTQPALRSITITNAANIQNPFITSKTISSVSHGPD 165
           RFP +L  G    +V  TTN     LR I    +A I+NP ++ + +    +GPD
Sbjct: 166 RFPFLLANGSSGIAVGMTTNMPPHNLREIAAAISAYIENPNLSIQELCDCINGPD 220

>GFRA2_CHICK (O13157) GDNF family receptor alpha-2 precursor (GFR-alpha-2)|
           (Neurturin receptor alpha) (NTNR-alpha) (NRTNR-alpha)
           (GDNF receptor beta) (GDNFR-beta)
          Length = 465

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 7   RFPIILGGGDPSVNKTTNHTQPALRSITIT-NAANIQNPFIT--SKTISSVSH 156
           R   I  G DP+ N  +NH   A ++  +  N   +++ +I+  SK IS+  H
Sbjct: 140 RLASIFSGMDPATNSKSNHCLDAAKACNLNDNCKRLRSGYISTCSKEISATEH 192

>CBID_BRUSU (Q8G018) Putative cobalt-precorrin-6A synthase [deacetylating] (EC|
           2.1.1.-)
          Length = 368

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 16  IILGGGDPSVNKTTNHTQPALRSITITNAANIQNPFITSKTISSVSHGPDI 168
           I + GG+    KT N     +  I+I     + +PF  S  I S+  G D+
Sbjct: 158 ISVPGGEEIAQKTWNPRLGIIGGISILGTTGVVHPFSCSAWIHSIHRGIDV 208

>CBID_BRUME (Q8YHU3) Putative cobalt-precorrin-6A synthase [deacetylating] (EC|
           2.1.1.-)
          Length = 369

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 16  IILGGGDPSVNKTTNHTQPALRSITITNAANIQNPFITSKTISSVSHGPDI 168
           I + GG+    KT N     +  I+I     + +PF  S  I S+  G D+
Sbjct: 159 ISVPGGEEIAQKTWNPRLGIIGGISILGTTGVVHPFSCSAWIHSIHRGIDV 209

>BNR1_YEAST (P40450) BNI1-related protein 1|
          Length = 1375

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 37  PSVNKTTNHTQPALRSIT----ITNAANIQNPFITSKTISSVSHGPDIIS*LSSGS 192
           PS+   TN    +L SI      +N+   Q  + +S  +SSVS  P +   LSS S
Sbjct: 696 PSMKNITNMQNVSLNSILSELEFSNSLGTQPNYQSSPVLSSVSSSPKLFPRLSSDS 751


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,189,403
Number of Sequences: 219361
Number of extensions: 523532
Number of successful extensions: 1365
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)