ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart17c03 |
|---|---|
| Clone Library Name | barley_pub |
>P2_ARATH (Q39173) Probable NADP-dependent oxidoreductase P2 (EC 1.3.1.74)| Length = 343 Score = 102 bits (253), Expect = 3e-22 Identities = 49/87 (56%), Positives = 64/87 (73%) Frame = -3 Query: 371 QYNLTAGEKEADVGVRNMTSLVAKRVRMQGFIEPDHKHLYPEYRAWVMPHIKEGRVVYVE 192 QYNL E GV N+++++ KR+R+QGF+ D YP++ V+P IKEG++ YVE Sbjct: 257 QYNL-----ENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVE 311 Query: 191 DVADGLEAAPGALIGLFHGRNVGKQVV 111 DVADGLE AP AL+GLFHG+NVGKQVV Sbjct: 312 DVADGLEKAPEALVGLFHGKNVGKQVV 338
>P1_ARATH (Q39172) Probable NADP-dependent oxidoreductase P1 (EC 1.3.1.74)| Length = 345 Score = 102 bits (253), Expect = 3e-22 Identities = 48/87 (55%), Positives = 65/87 (74%) Frame = -3 Query: 371 QYNLTAGEKEADVGVRNMTSLVAKRVRMQGFIEPDHKHLYPEYRAWVMPHIKEGRVVYVE 192 QYNL E GV N+++++ KR+R+QGF+ D Y ++ +V+PHI+EG++ YVE Sbjct: 259 QYNL-----ENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVE 313 Query: 191 DVADGLEAAPGALIGLFHGRNVGKQVV 111 DVADGLE AP AL+GLFHG+NVGKQVV Sbjct: 314 DVADGLEKAPEALVGLFHGKNVGKQVV 340
>YNCB_ECOLI (P76113) Putative NADP-dependent oxidoreductase yncB (EC 1.-.-.-)| Length = 353 Score = 61.2 bits (147), Expect = 6e-10 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%) Frame = -3 Query: 320 MTSLVAKRVRMQGFI-EPDHKHLYPEYRAWVMPHIKEGRVVYVEDVADGLEAAPGALIGL 144 M +++ KR+R+QGFI D+ H E++ + +KE ++ Y E++ DGLE AP IGL Sbjct: 277 MATVLKKRIRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLENAPQTFIGL 336 Query: 143 FHGRNVGKQVVKLTTPD 93 G+N GK V+++ D Sbjct: 337 LKGKNFGKVVIRVAGDD 353
>LTB4D_RAT (P97584) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) (Dithiolethione-inducible gene 1 protein) (D3T-inducible gene 1 protein) (DIG-1) Length = 329 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = -3 Query: 311 LVAKRVRMQGFIEPDHK-HLYPEYRAWVMPHIKEGRVVYVEDVADGLEAAPGALIGLFHG 135 ++ +++RM+GFI + + + +M + EG++ Y E + +G E P A +G+ G Sbjct: 260 IIYQQLRMEGFIVTRWQGEVRQKALTDLMNWVSEGKIRYHEYITEGFEKMPAAFMGMLKG 319 Query: 134 RNVGKQVVK 108 N+GK +VK Sbjct: 320 DNLGKTIVK 328
>LTB4D_MOUSE (Q91YR9) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 40.4 bits (93), Expect = 0.001 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = -3 Query: 311 LVAKRVRMQGFI------EPDHKHLYPEYRAWVMPHIKEGRVVYVEDVADGLEAAPGALI 150 ++ +++RM+GFI E K L E WV EG+V E V +G E P A + Sbjct: 260 VIYQQLRMEGFIVNRWQGEVRQKAL-TELMNWV----SEGKVQCHEYVTEGFEKMPAAFM 314 Query: 149 GLFHGRNVGKQVVK 108 G+ G N+GK +VK Sbjct: 315 GMLKGENLGKTIVK 328
>LTB4D_CAVPO (Q9EQZ5) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (LTB4) (12-HD) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) (PGR) Length = 329 Score = 40.4 bits (93), Expect = 0.001 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%) Frame = -3 Query: 314 SLVAKRVRMQGFI----EPD-HKHLYPEYRAWVMPHIKEGRVVYVEDVADGLEAAPGALI 150 S++ K++R++GFI + D + + WV+ EG++ Y E V G E P A I Sbjct: 259 SIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVL----EGKIQYHEHVTKGFENMPAAFI 314 Query: 149 GLFHGRNVGKQVV 111 + +G N+GK VV Sbjct: 315 EMLNGANLGKAVV 327
>LTB4D_PIG (Q29073) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 40.0 bits (92), Expect = 0.001 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -3 Query: 221 IKEGRVVYVEDVADGLEAAPGALIGLFHGRNVGKQVVK 108 + EG++ Y E + +G E P A +G+ G N+GK +VK Sbjct: 291 VSEGKIQYHEHITEGFENMPAAFMGMLKGENLGKAIVK 328
>LTB4D_RABIT (Q28719) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (ADRAB-F) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 349 Score = 39.3 bits (90), Expect = 0.002 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Frame = -3 Query: 314 SLVAKRVRMQGFI------EPDHKHLYPEYRAWVMPHIKEGRVVYVEDVADGLEAAPGAL 153 S++ + +RM+GFI E K L E WV+ EG++ Y E V +G E P A Sbjct: 259 SVLYQEIRMEGFIFNRWKGEVGQKAL-KELLTWVL----EGKIQYREFVIEGFENMPAAF 313 Query: 152 IGLFHGRNVGK 120 + + G NVGK Sbjct: 314 MRMLKGENVGK 324
>QOR_LEIAM (P42865) Probable quinone oxidoreductase (EC 1.6.5.5)| (NADPH:quinone reductase) (P36) Length = 340 Score = 38.5 bits (88), Expect = 0.004 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = -3 Query: 311 LVAKRVRMQGFIEPDHKHLYPEYRAWVMPHIKEGRVVYVED--VADGLEAAPGALIGLFH 138 L+ K + GF P + P+Y A ++ ++K G+V D V GL + A+ L+ Sbjct: 269 LLVKSASLNGFFLPQFHDVIPKYMANLLQYLKAGQVKLFVDKKVFHGLSSVADAVDHLYS 328 Query: 137 GRNVGKQVVKL 105 G N GK +V++ Sbjct: 329 GANYGKVLVEI 339
>LTB4D_HUMAN (Q14914) NADP-dependent leukotriene B4 12-hydroxydehydrogenase (EC| 1.3.1.74) (15-oxoprostaglandin 13-reductase) (EC 1.3.1.48) Length = 329 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = -3 Query: 236 WVMPHIKEGRVVYVEDVADGLEAAPGALIGLFHGRNVGKQVVK 108 WV+ EG++ Y E + +G E P A +G+ G N+GK +VK Sbjct: 290 WVL----EGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVK 328
>YNN4_YEAST (P53912) Hypothetical 41.2 kDa protein in FPR1-TOM22 intergenic| region Length = 376 Score = 32.0 bits (71), Expect = 0.38 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Frame = -3 Query: 275 EPDHKHLYPEYRAWVMPHIKEGRV--VYVEDVADGLEAAPGALIGLFHGRNVGKQVV 111 +P++K ++ ++ P I +G + + V+ +GL+ P L + HGRN G+++V Sbjct: 316 DPEYKEAAIKFIKFINPKINDGEIHHIPVKVYKNGLDDIPQLLDDIKHGRNSGEKLV 372
>ZADH1_MOUSE (Q8VDQ1) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 31.6 bits (70), Expect = 0.49 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = -3 Query: 218 KEGRVVYVEDVADGLEAAPGALIGLFHGRNVGKQVV 111 KEG++ E VA GLE A + G NVGKQ+V Sbjct: 308 KEGKLKVKETVAKGLENMGVAFQSMMTGGNVGKQIV 343
>ZADH1_PONPY (Q5R806) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 218 KEGRVVYVEDVADGLEAAPGALIGLFHGRNVGKQVV 111 KEG++ E V +GLE A + G N+GKQ+V Sbjct: 308 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIV 343
>ZADH1_HUMAN (Q8N8N7) Zinc-binding alcohol dehydrogenase domain-containing| protein 1 (EC 1.-.-.-) Length = 351 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 218 KEGRVVYVEDVADGLEAAPGALIGLFHGRNVGKQVV 111 KEG++ E V +GLE A + G N+GKQ+V Sbjct: 308 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIV 343
>NEUM_BOVIN (P06836) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Calmodulin-binding protein P-57) Length = 239 Score = 30.8 bits (68), Expect = 0.84 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 309 RGQAGPDAGVHRARPQAPLPGVQGVGDA 226 +G+ PDA +A PQAP P + G A Sbjct: 112 KGEGAPDAATEQAAPQAPAPSEEKAGSA 139
>NEUM_FELCA (Q6S9D9) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) Length = 242 Score = 30.8 bits (68), Expect = 0.84 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 Query: 309 RGQAGPDAGVHRARPQAPLPGVQGVGDA 226 +G+ PDA +A PQAP+P + G A Sbjct: 114 KGEGTPDAATEQAAPQAPVPSEEKAGSA 141
>KGUA_THEMA (Q9X215) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 207 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -3 Query: 302 KRVRMQGFIE--PDHKHLYPEYRAWVMPHIKEGRVVYVE 192 KRV F+E H HLY R++V HI EG+ V ++ Sbjct: 61 KRVERGEFLEWARVHGHLYGTLRSFVESHINEGKDVVLD 99
>COAE_BACHD (Q9K857) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 201 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -2 Query: 324 QHDLPRGQAGPDAGVHRARPQAPLPGVQGVGDA 226 Q + R QAG D +HR R Q PL + DA Sbjct: 140 QRLMNRDQAGKDDAIHRIRSQRPLESKRDRADA 172
>PURA_CARHZ (Q3A8S5) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 427 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Frame = -3 Query: 335 VGVRNMTSLVAKRVRMQGFIEPDHKHLYPEYRAWVMPHIKEGRVVYVEDVADG----LEA 168 + ++ +L+ K ++GF + H Y EY + P+ + + + + G E Sbjct: 162 LNLKEKNNLLEKIYGVEGFSYDELYHEYLEYAEIIRPYATDTSRLINDAIESGQKVLFEG 221 Query: 167 APGALIGLFHG 135 A G L+ L HG Sbjct: 222 AQGTLLDLDHG 232
>ZADH2_HUMAN (Q8N4Q0) Zinc-binding alcohol dehydrogenase domain-containing| protein 2 (EC 1.-.-.-) Length = 377 Score = 27.3 bits (59), Expect = 9.3 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 12/81 (14%) Frame = -3 Query: 311 LVAKRVRMQGFIEPDHKHLYPEYRAWVMPHIKE----GRVVYVEDVAD--------GLEA 168 L+ K +QGF H +Y+A M H+ E G +V D+ D GLE+ Sbjct: 293 LLKKSASVQGFFL---NHYLSKYQA-AMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLES 348 Query: 167 APGALIGLFHGRNVGKQVVKL 105 A+ ++ G+N GK VV+L Sbjct: 349 IFRAVNYMYMGKNTGKIVVEL 369
>SEVE_ECHGR (Q24800) Severin| Length = 374 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -3 Query: 311 LVAKRVRMQGFIEPDHKHLYP-EYRAWVMPHIKEGRVVYVEDVA 183 LV +V ++G +H+ P EYR ++ KEG+ Y+ VA Sbjct: 147 LVILKVILKGGYASGFRHVKPDEYRPRLLRFCKEGKTTYMRQVA 190
>BTUB_VIBVU (Q8DD41) Vitamin B12 transporter btuB precursor (Cobalamin| receptor) (Outer membrane cobalamin translocator) Length = 606 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -3 Query: 356 AGEKEADVGVRNMTSLVAKRVRMQGFIEPDHKHLYPEYRAW 234 AGE + GV T L +++ G + D Y YR W Sbjct: 347 AGESRSTTGVYLSTDLQLGDLQVTGSVRNDKHDTYDNYRTW 387
>SUR2_CAEEL (Q10669) Protein sur-2| Length = 1587 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/52 (23%), Positives = 26/52 (50%) Frame = -2 Query: 156 AHRPLPWPQRRQAGRQAHHPRHRVTHKIVLVADQLSTACQSSRINERIYSHR 1 +H+ +P PQ+ + Q H H TH+++ + + QS+ ++ H+ Sbjct: 1434 SHQMMPPPQQHSSSLQHHLQHHTSTHQMMDTSQHQTIQQQSNHPTQQQLQHQ 1485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,284,556 Number of Sequences: 219361 Number of extensions: 596431 Number of successful extensions: 2194 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2193 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
