ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110553.1| Zea mays CL22344_1 mRNA sequence 103 4e-19
2ref|XM_473036.1| Oryza sativa (japonica cultivar-group), predic... 78 2e-11
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
4dbj|AK109382.2| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
5dbj|AK069136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
6emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 78 2e-11
7gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 46 0.081
8emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 46 0.081
9gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 46 0.081
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
11gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.081
12emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb... 46 0.081
13ref|XM_367857.1| Magnaporthe grisea 70-15 chromosome III predict... 44 0.32
14emb|X70294.1|HSATPABA H.salinarium genes atpA and atpB 44 0.32
15gb|AE005102.1| Halobacterium sp. NRC-1 section 133 of 170 of the... 44 0.32
16gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
17gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.3
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
20dbj|D31792.1| Streptomyces griseus DNA for serine/threonine prot... 42 1.3
21ref|XM_467029.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
22emb|BX322532.2| Human DNA sequence from clone RP11-543A11 on chr... 40 5.0
23gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.0
24gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.0
25gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.0
26emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 40 5.0
27gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.0
28dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 5.0
29ref|XM_931645.1| PREDICTED: Homo sapiens zinc finger protein 62 ... 40 5.0
30ref|XM_926858.1| PREDICTED: Homo sapiens zinc finger protein 62 ... 40 5.0
31gb|AC016572.6| Homo sapiens chromosome 5 clone CTB-22L19, comple... 40 5.0
32gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.0
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
34dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.0
35dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.0
36dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
37dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
38dbj|AK109477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
39gb|AF104994.1|AF104994 Streptomyces coelicolor A3(2) periplasmic... 40 5.0
40emb|AJ324359.1|HSA324359 Homo sapiens genomic sequence surroundi... 40 5.0
41gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 5.0 
>gb|AY110553.1| Zea mays CL22344_1 mRNA sequence
          Length = 656

 Score =  103 bits (52), Expect = 4e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                       
Query: 218 tgatgtgcggcatcacccacgccctgtactccgggtagaggtgcttgtggtcgggctcga 277
           |||||| ||||| ||||||||||  ||||| |||||||||||||||||||||||||||||
Sbjct: 247 tgatgtacggcagcacccacgcctcgtactgcgggtagaggtgcttgtggtcgggctcga 306

                       
Query: 278 tgaacccctgca 289
           ||||||||||||
Sbjct: 307 tgaacccctgca 318



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 111 gacgacctgcttgccgacgttgcggccatggaagaggccgatgagcgc 158
           ||||| |||||| ||||||||||| || |||||||| || ||||||||
Sbjct: 140 gacgagctgctttccgacgttgcgaccgtggaagagtcctatgagcgc 187
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>ref|XM_473036.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1038

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                        
Query: 115  acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 174
            |||||||||||||||||||||||   |||||| |||||||||||  | ||||||  ||| 
Sbjct: 1016 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 957

                                       
Query: 175  agcccgtcggcgacgtcctcgacgtac 201
            ||||| |||||||||||||| ||||||
Sbjct: 956  agcccttcggcgacgtcctccacgtac 930
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                            
Query: 115      acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 174
                |||||||||||||||||||||||   |||||| |||||||||||  | ||||||  ||| 
Sbjct: 24833555 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 24833614

                                           
Query: 175      agcccgtcggcgacgtcctcgacgtac 201
                ||||| |||||||||||||| ||||||
Sbjct: 24833615 agcccttcggcgacgtcctccacgtac 24833641
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>dbj|AK109382.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-F02, full
            insert sequence
          Length = 1343

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                        
Query: 115  acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 174
            |||||||||||||||||||||||   |||||| |||||||||||  | ||||||  ||| 
Sbjct: 1124 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 1065

                                       
Query: 175  agcccgtcggcgacgtcctcgacgtac 201
            ||||| |||||||||||||| ||||||
Sbjct: 1064 agcccttcggcgacgtcctccacgtac 1038
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>dbj|AK069136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008C06, full
            insert sequence
          Length = 1269

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                        
Query: 115  acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 174
            |||||||||||||||||||||||   |||||| |||||||||||  | ||||||  ||| 
Sbjct: 1062 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 1003

                                       
Query: 175  agcccgtcggcgacgtcctcgacgtac 201
            ||||| |||||||||||||| ||||||
Sbjct: 1002 agcccttcggcgacgtcctccacgtac 976
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
             complete sequence
          Length = 170765

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                         
Query: 115   acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 174
             |||||||||||||||||||||||   |||||| |||||||||||  | ||||||  ||| 
Sbjct: 95271 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 95330

                                        
Query: 175   agcccgtcggcgacgtcctcgacgtac 201
             ||||| |||||||||||||| ||||||
Sbjct: 95331 agcccttcggcgacgtcctccacgtac 95357
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                 
Query: 145    aggccgatgagcgctccaggcgcggcctcgagcccgtcggcgacgtcctcg 195
              |||||||| ||||| |  ||||| || |||||||||||| |||||||||||
Sbjct: 385224 aggccgatcagcgcccgcggcgccgcgtcgagcccgtcgacgacgtcctcg 385274
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 145     aggccgatgagcgctccaggcgcggcctcgagcccgtcggcgacgtcctcg 195
               |||||||| ||||| |  ||||| || |||||||||||| |||||||||||
Sbjct: 1704448 aggccgatcagcgcccgcggcgccgcgtcgagcccgtcgacgacgtcctcg 1704498
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 145     aggccgatgagcgctccaggcgcggcctcgagcccgtcggcgacgtcctcg 195
               |||||||| ||||| |  ||||| || |||||||||||| |||||||||||
Sbjct: 1154715 aggccgatcagcgcccgcggcgccgcgtcgagcccgtcgacgacgtcctcg 1154765
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 74/91 (81%)
 Strand = Plus / Minus

                                                                           
Query: 117     ctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcgag 176
               |||||||||||| |||||||||  ||| || || ||||| ||| | || || ||||||||
Sbjct: 6871070 ctgcttgccgacattgcggccagtgaatagcccaatgagagctgccggtgccgcctcgag 6871011

                                              
Query: 177     cccgtcggcgacgtcctcgacgtacaccacc 207
               ||| ||  ||| |||||| || |||||||||
Sbjct: 6871010 cccctcaacgatgtcctccacatacaccacc 6870980
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 74/91 (81%)
 Strand = Plus / Minus

                                                                           
Query: 117     ctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcgag 176
               |||||||||||| |||||||||  ||| || || ||||| ||| | || || ||||||||
Sbjct: 6870949 ctgcttgccgacattgcggccagtgaatagcccaatgagagctgccggtgccgcctcgag 6870890

                                              
Query: 177     cccgtcggcgacgtcctcgacgtacaccacc 207
               ||| ||  ||| |||||| || |||||||||
Sbjct: 6870889 cccctcaacgatgtcctccacatacaccacc 6870859
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>emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144563

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 74/91 (81%)
 Strand = Plus / Plus

                                                                         
Query: 117   ctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcgag 176
             |||||||||||| |||||||||  ||| || || ||||| ||| | || || ||||||||
Sbjct: 90968 ctgcttgccgacattgcggccagtgaatagcccaatgagagctgccggtgccgcctcgag 91027

                                            
Query: 177   cccgtcggcgacgtcctcgacgtacaccacc 207
             ||| ||  ||| |||||| || |||||||||
Sbjct: 91028 cccctcaacgatgtcctccacatacaccacc 91058
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>ref|XM_367857.1| Magnaporthe grisea 70-15 chromosome III predicted protein
           (MG07761.4) partial mRNA
          Length = 681

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 87  ctcggtgtcgggggtggtgagcttga 112
           |||||| |||||||||||||||||||
Sbjct: 150 ctcggtctcgggggtggtgagcttga 125
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>emb|X70294.1|HSATPABA H.salinarium genes atpA and atpB
          Length = 3366

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 179  cgtcggcgacgtcctcgacgta 200
            ||||||||||||||||||||||
Sbjct: 3261 cgtcggcgacgtcctcgacgta 3240
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>gb|AE005102.1| Halobacterium sp. NRC-1 section 133 of 170 of the complete genome
          Length = 11510

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 179  cgtcggcgacgtcctcgacgta 200
            ||||||||||||||||||||||
Sbjct: 3484 cgtcggcgacgtcctcgacgta 3505
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>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16,
              complete sequence
          Length = 175425

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 166    gcggcctcgagcccgtcggcgacgtcctcgacg 198
              ||||||||||| | |||||||||| ||||||||
Sbjct: 114873 gcggcctcgaggcggtcggcgacggcctcgacg 114841
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 325    cgcacgccgacgtcggcctcc 345
              |||||||||||||||||||||
Sbjct: 854431 cgcacgccgacgtcggcctcc 854451
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 166      gcggcctcgagcccgtcggcgacgtcctcgacg 198
                ||||||||||| | |||||||||| ||||||||
Sbjct: 19246085 gcggcctcgaggcggtcggcgacggcctcgacg 19246053
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 166      gcggcctcgagcccgtcggcgacgtcctcgacg 198
                ||||||||||| | |||||||||| ||||||||
Sbjct: 19405634 gcggcctcgaggcggtcggcgacggcctcgacg 19405602
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>dbj|D31792.1| Streptomyces griseus DNA for serine/threonine protein kinases,
            complete cds
          Length = 3866

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 164  gcgcggcctcgagcccgtcggcgacgtcc 192
            |||||||  ||||||||||||||||||||
Sbjct: 2481 gcgcggcggcgagcccgtcggcgacgtcc 2453
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>ref|XM_467029.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1524

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 cgtcggcctccttctcgccg 354
           ||||||||||||||||||||
Sbjct: 793 cgtcggcctccttctcgccg 812
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>emb|BX322532.2| Human DNA sequence from clone RP11-543A11 on chromosome 1 Contains the
             5' end of the gene for a novel protein (FLJ16613) and the
             5' end of one variant of the OPN3 gene for opsin 3
             (encephalopsin, panopsin), complete sequence
          Length = 40220

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    tcactcggtgtcgggggtggtgag 107
             ||||| ||||||||||||||||||
Sbjct: 23243 tcactaggtgtcgggggtggtgag 23266
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 182     cggcgacgtcctcgacgtacacca 205
               ||||||||||||||||| ||||||
Sbjct: 3539753 cggcgacgtcctcgacgaacacca 3539776
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    tctcgccggcggtgaggttg 366
              ||||||||||||||||||||
Sbjct: 797659 tctcgccggcggtgaggttg 797640
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     cctcgagcccgtcggcgacg 189
               ||||||||||||||||||||
Sbjct: 1937276 cctcgagcccgtcggcgacg 1937295
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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   gtcggcgacgtcctcgacgt 199
             ||||||||||||||||||||
Sbjct: 36019 gtcggcgacgtcctcgacgt 36000
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   tctcgccggcggtgaggttg 366
             ||||||||||||||||||||
Sbjct: 40809 tctcgccggcggtgaggttg 40828
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 216     cttgatgtgcggcatcaccc 235
               ||||||||||||||||||||
Sbjct: 4801713 cttgatgtgcggcatcaccc 4801694
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>ref|XM_931645.1| PREDICTED: Homo sapiens zinc finger protein 62 homolog (mouse),
           transcript variant 3 (ZFP62), mRNA
          Length = 2672

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 155 gcgctccaggcgcggcctcgagcccgtcggcg 186
           |||||||||||||||||  ||| |||||||||
Sbjct: 67  gcgctccaggcgcggccaggaggccgtcggcg 36
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>ref|XM_926858.1| PREDICTED: Homo sapiens zinc finger protein 62 homolog (mouse),
           transcript variant 1 (ZFP62), mRNA
          Length = 4846

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 155 gcgctccaggcgcggcctcgagcccgtcggcg 186
           |||||||||||||||||  ||| |||||||||
Sbjct: 67  gcgctccaggcgcggccaggaggccgtcggcg 36
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>gb|AC016572.6| Homo sapiens chromosome 5 clone CTB-22L19, complete sequence
          Length = 143687

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 155   gcgctccaggcgcggcctcgagcccgtcggcg 186
             |||||||||||||||||  ||| |||||||||
Sbjct: 26474 gcgctccaggcgcggccaggaggccgtcggcg 26505
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    tctcgccggcggtgaggttg 366
              ||||||||||||||||||||
Sbjct: 100428 tctcgccggcggtgaggttg 100447
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 335      cgtcggcctccttctcgccg 354
                ||||||||||||||||||||
Sbjct: 26016509 cgtcggcctccttctcgccg 26016528
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    tctcgccggcggtgaggttg 366
              ||||||||||||||||||||
Sbjct: 565678 tctcgccggcggtgaggttg 565697
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     tctcgccggcggtgaggttg 366
               ||||||||||||||||||||
Sbjct: 4651652 tctcgccggcggtgaggttg 4651671
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>dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519A12
          Length = 156676

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   cgtcggcctccttctcgccg 354
             ||||||||||||||||||||
Sbjct: 23955 cgtcggcctccttctcgccg 23974
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>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0030D07
          Length = 133321

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   cgtcggcctccttctcgccg 354
             ||||||||||||||||||||
Sbjct: 80382 cgtcggcctccttctcgccg 80401
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>dbj|AK109477.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C09, full
           insert sequence
          Length = 1524

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 cgtcggcctccttctcgccg 354
           ||||||||||||||||||||
Sbjct: 793 cgtcggcctccttctcgccg 812
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>gb|AF104994.1|AF104994 Streptomyces coelicolor A3(2) periplasmic binding protein (atrA),
            permease (AtrB), ATP-binding protein (atrC),
            methyltransferase (metZ), signal peptidase, Ni-containing
            superoxide dismutase (sodN), puromycin
            N-acetyltransferase (pat), and geranyl transferase (gtr)
            genes, complete cds; and unknown genes
          Length = 8568

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  gtcggcgacgtcctcgacgt 199
            ||||||||||||||||||||
Sbjct: 2693 gtcggcgacgtcctcgacgt 2712
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>emb|AJ324359.1|HSA324359 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-DN21C
          Length = 660

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 155 gcgctccaggcgcggcctcgagcccgtcggcg 186
           |||||||||||||||||  ||| |||||||||
Sbjct: 230 gcgctccaggcgcggccaggaggccgtcggcg 261
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 216     cttgatgtgcggcatcaccc 235
               ||||||||||||||||||||
Sbjct: 4806624 cttgatgtgcggcatcaccc 4806605


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,964,946
Number of Sequences: 3902068
Number of extensions: 1964946
Number of successful extensions: 38918
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37858
Number of HSP's gapped (non-prelim): 1060
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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