ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart17c02 |
|---|---|
| Clone Library Name | barley_pub |
>RBS1_FRIAG (O24634) Ribulose bisphosphate carboxylase small chain 1/4,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1/4) Length = 179 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = +2 Query: 209 LARDSSILTAAHTASCAGPMTSGVAAATWLRRSSSAFP 322 +A S++L++ TA+CA P + + A +S+SAFP Sbjct: 1 MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFP 38
>LEPA_BACFR (Q64T74) GTP-binding protein lepA| Length = 593 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +1 Query: 250 VLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPV 351 ++R S G +++AAV+ER+PH E+ P+ Sbjct: 155 IIRASGKTGMGVEEILAAVIERIPHPQGDESAPL 188
>LEPA_BACFN (Q5LC85) GTP-binding protein lepA| Length = 593 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +1 Query: 250 VLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPV 351 ++R S G +++AAV+ER+PH E+ P+ Sbjct: 155 IIRASGKTGMGVEEILAAVIERIPHPQGDESAPL 188
>LEPA_BACTN (Q8AA33) GTP-binding protein lepA| Length = 593 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +1 Query: 250 VLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPV 351 ++R S G +++AAV+ER+PH E P+ Sbjct: 155 IIRASGKTGMGVEEILAAVIERIPHPEGDEEAPL 188
>RBS5_FRIAG (O22645) Ribulose bisphosphate carboxylase small chain 5,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 5) Length = 179 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +2 Query: 209 LARDSSILTAAHTASCAGPMTSGVAAATWLRRSSSAFP 322 +A +++L++ TA+CA P + + A +S+SAFP Sbjct: 1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFP 38
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/96 (21%), Positives = 34/96 (35%) Frame = +2 Query: 50 HHRCFAHQESHGAFSFQAQSRATT*YVRFLLLLPVVLIPCHDAPCFVQTNHHQLARDSSI 229 +HR H++S G + LP L P HD P H+ Sbjct: 116 NHRTAEHKDSRGIYC----------------RLPPRLGPAHDLPRRPLRRRHRKPGHRRR 159 Query: 230 LTAAHTASCAGPMTSGVAAATWLRRSSSAFPTLPHA 337 + T++ +G ++G + W S+ T P A Sbjct: 160 TSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPRA 195
>SEC16_YEAST (P48415) Multidomain vesicle coat protein| Length = 2195 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +2 Query: 242 HTASCAGPMTSGVAAATWLRRSSSAFPTLPHARLAQSYQCSAT*TPRPAMMPLA 403 +T+ GP+ +G ++ RSS A P +P A+ + S Q A P ++PLA Sbjct: 868 YTSQPVGPV-AGNSSYQSQTRSSYAVPMMPQAQTSASIQPHANIQPPTGILPLA 920
>G6PI_BORPE (Q7VUF4) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 521 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/50 (26%), Positives = 22/50 (44%) Frame = +2 Query: 173 DAPCFVQTNHHQLARDSSILTAAHTASCAGPMTSGVAAATWLRRSSSAFP 322 D+ HH D+ I+ A+ + + P+ + A WLR + A P Sbjct: 159 DSHAVADALHHLDPHDTLIIVASKSFTTTEPLANAEVAMNWLRNAGVADP 208
>G6PI_BORPA (Q7W197) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 521 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/50 (26%), Positives = 22/50 (44%) Frame = +2 Query: 173 DAPCFVQTNHHQLARDSSILTAAHTASCAGPMTSGVAAATWLRRSSSAFP 322 D+ HH D+ I+ A+ + + P+ + A WLR + A P Sbjct: 159 DSHAVADALHHLDPHDTLIIVASKSFTTTEPLANAEVAMNWLRNAGVADP 208
>G6PI_BORBR (Q7WP01) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 521 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/50 (26%), Positives = 22/50 (44%) Frame = +2 Query: 173 DAPCFVQTNHHQLARDSSILTAAHTASCAGPMTSGVAAATWLRRSSSAFP 322 D+ HH D+ I+ A+ + + P+ + A WLR + A P Sbjct: 159 DSHAVADALHHLDPHDTLIIVASKSFTTTEPLANAEVAMNWLRNAGVADP 208
>ENGA_STRAW (Q828Y7) GTP-binding protein engA| Length = 491 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 226 YPHSCSHGVLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPVV 354 +P S HG RG+GD++ AV+E LP A+ G + Sbjct: 191 HPVSALHG---------RGTGDMLDAVLEALPEAPAQSFGAAI 224
>HXD9_HUMAN (P28356) Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2)| Length = 342 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/45 (40%), Positives = 22/45 (48%) Frame = +2 Query: 218 DSSILTAAHTASCAGPMTSGVAAATWLRRSSSAFPTLPHARLAQS 352 D TAA ASC+ S V +A+W SA P+ P A A S Sbjct: 44 DGPAATAAEFASCSFAPRSAVFSASW-----SAVPSQPPAAAAMS 83
>ENGA_STRP8 (P64065) GTP-binding protein engA| Length = 436 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 226 YPHSCSHGVLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPVV 354 YP S HG+ G+GD++ A+VE LP A E ++ Sbjct: 142 YPVSSVHGI---------GTGDVLDAIVENLPVEEAEENDDII 175
>ENGA_STRP6 (Q5XDR3) GTP-binding protein engA| Length = 436 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 226 YPHSCSHGVLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPVV 354 YP S HG+ G+GD++ A+VE LP A E ++ Sbjct: 142 YPVSSVHGI---------GTGDVLDAIVENLPVEEAEENDDII 175
>ENGA_STRP3 (Q8K8J8) GTP-binding protein engA| Length = 436 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 226 YPHSCSHGVLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPVV 354 YP S HG+ G+GD++ A+VE LP A E ++ Sbjct: 142 YPVSSVHGI---------GTGDVLDAIVENLPVEEAEENDDII 175
>ENGA_STRP1 (P64064) GTP-binding protein engA| Length = 436 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 226 YPHSCSHGVLRGSDDLRRGSGDLVAAVVERLPHLAAREAGPVV 354 YP S HG+ G+GD++ A+VE LP A E ++ Sbjct: 142 YPVSSVHGI---------GTGDVLDAIVENLPVEEAEENDDII 175 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,866,893 Number of Sequences: 219361 Number of extensions: 806643 Number of successful extensions: 2472 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2430 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2471 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
