ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome... 90 7e-15
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
3dbj|AK071806.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-15
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 90 7e-15
5gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.35
6gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.35
7gb|AF325217.1| Rhodopseudomonas palustris membrane-bound proton-... 44 0.35
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
9ref|XM_417831.1| PREDICTED: Gallus gallus similar to thioredoxin... 42 1.4
10gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome... 42 1.4
11gb|AC011195.14| Homo sapiens chromosome 17, clone CTD-2200P10, c... 42 1.4
12dbj|AK031098.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 42 1.4
13emb|AJ417658.1|POS417658 Pleurotus ostreatus partial mRNA for hy... 42 1.4
14emb|BX908786.9| Zebrafish DNA sequence from clone CH211-13O8 in ... 42 1.4
15emb|CT010517.11| Mouse DNA sequence from clone RP23-357P12 on ch... 42 1.4
16gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
17gb|AC095996.9| Rattus norvegicus 18 BAC CH230-13K4 (Children's H... 40 5.4
18gb|AC121292.9| Mus musculus chromosome 1, clone RP23-172B15, com... 40 5.4
19ref|XM_418938.1| PREDICTED: Gallus gallus similar to tRNA seleno... 40 5.4
20gb|DQ118403.1| Uncultured euryarchaeote Alv-FOS1 fosmid genomic ... 40 5.4
21emb|AL157879.7| Human DNA sequence from clone RP11-110H4 on chro... 40 5.4
22gb|AC093243.2| Homo sapiens chromosome 5 clone RP11-110H4, compl... 40 5.4
23gb|AC140139.2| Homo sapiens chromosome 5 clone RP11-1417I21, com... 40 5.4
24gb|AC139776.2| Homo sapiens chromosome 5 clone RP11-1005E12, com... 40 5.4
25gb|AC139495.2| Homo sapiens chromosome 5 clone RP11-848G14, comp... 40 5.4
26gb|AC139272.3| Homo sapiens chromosome 5 clone RP11-589F5, compl... 40 5.4
27gb|AC138959.2| Homo sapiens chromosome 5 clone RP11-880C13, comp... 40 5.4
28gb|AC138866.2| Homo sapiens chromosome 5 clone RP11-1415C14, com... 40 5.4
29gb|AC146949.1| Homo sapiens chromosome 5 clone RP11-1198D22, com... 40 5.4
30gb|AC145129.2| Homo sapiens chromosome 5 clone RP11-1080P5, comp... 40 5.4
31gb|AC145034.2| Homo sapiens chromosome 5 clone RP11-1414O21, com... 40 5.4
32gb|AC146944.1| Homo sapiens chromosome 5 clone RP11-497H16, comp... 40 5.4
33gb|AC138957.2| Homo sapiens chromosome 5 clone RP11-846E4, compl... 40 5.4
34gb|AC139505.2| Homo sapiens chromosome 5 clone RP11-910M8, compl... 40 5.4
35gb|AC138928.2| Homo sapiens chromosome 5 clone RP11-674O19, comp... 40 5.4
36gb|AC002432.1| Homo sapiens BAC clone CTA-317G18 from 7, complet... 40 5.4
37gb|AC145144.2| Homo sapiens chromosome 5 clone RP11-1432L1, comp... 40 5.4
38gb|AC145102.2| Homo sapiens chromosome 5 clone RP11-696L12, comp... 40 5.4
39gb|AC139510.3| Homo sapiens chromosome 5 clone RP11-977J23, comp... 40 5.4
40gb|AC139507.2| Homo sapiens chromosome 5 clone RP11-937A6, compl... 40 5.4
41gb|AC139463.2| Homo sapiens chromosome 5 clone RPCI-11_1264N5, c... 40 5.4
42gb|AC139277.2| Homo sapiens chromosome 5 clone RP11-619K7, compl... 40 5.4
43gb|AC138911.2| Homo sapiens chromosome 5 clone RP11-618O22, comp... 40 5.4
44gb|AC132802.2| Homo sapiens chromosome 5 clone CTC-273M15, compl... 40 5.4
45emb|AL009030.15|HS28I24 Human DNA sequence from clone RP1-28I24 ... 40 5.4
46gb|AC182492.2| Pan troglodytes BAC clone CH251-294F23 from chrom... 40 5.4
47gb|AC006069.3| Arabidopsis thaliana chromosome 2 clone T8O11 map... 40 5.4
48gb|AC093247.3| Homo sapiens chromosome 5 clone RP11-138M1, compl... 40 5.4
49emb|CR406308.1| Gallus gallus finished cDNA, clone ChEST864j2 40 5.4
50gb|AC010237.8|AC010237 Homo sapiens chromosome 5 clone CTC-348J2... 40 5.4
51emb|BX932376.2| Gallus gallus finished cDNA, clone ChEST96n4 40 5.4
52gb|AC139500.2| Homo sapiens chromosome 5 clone RP11-864E4, compl... 40 5.4
53gb|AC138827.3| Homo sapiens chromosome 5 clone RP11-1151M9, comp... 40 5.4
54gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, comp... 40 5.4
55gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.4
56emb|BX950487.1| Gallus gallus finished cDNA, clone ChEST544l1 40 5.4
57gb|AC140175.2| Homo sapiens chromosome 5 clone RP11-833G1, compl... 40 5.4
58gb|AC108108.2| Homo sapiens chromosome 5 clone RP11-260M21, comp... 40 5.4
59gb|AC118459.2| Homo sapiens chromosome 5 clone RP11-124L9, compl... 40 5.4
60gb|AC137781.2| Homo sapiens chromosome 5 clone RP11-1108I11, com... 40 5.4
61gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.4
62gb|AC138409.1| Homo sapiens chromosome 5 clone RP11-1023L17, com... 40 5.4
63gb|AC131392.2| Homo sapiens chromosome 5 clone RP11-98J23, compl... 40 5.4
64emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.4
65gb|AC134334.3| Mus musculus BAC clone RP24-143M4 from 9, complet... 40 5.4
66gb|AC154280.1| Mus musculus BAC clone RP24-271G1 from 9, complet... 40 5.4
67gb|AC157664.2| Gallus gallus BAC clone CH261-174B17 from chromos... 40 5.4
68gb|AC132801.2| Homo sapiens chromosome 5 clone CTC-202O15, compl... 40 5.4
69gb|AC167020.3| Mus musculus BAC clone RP23-201I6 from chromosome... 40 5.4
70dbj|AB059297.1| Human immunodeficiency virus type 1 env gene for... 40 5.4 
>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0086N07 map S790A, complete sequence
          Length = 178523

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Plus

                                                                         
Query: 287   gcgacctggttgcggcggtcgtcgagcgccttccccaccttgccgcacgcgaggctggcc 346
             ||||||||||| ||||| ||||||||| |||| | | |||||  | | ||||  || |||
Sbjct: 99829 gcgacctggttccggcgctcgtcgagcaccttactcgccttgaggtaagcgatccttgcc 99888

                                                                      
Query: 347   cagtcgtaccagtgcagcgcgacgtagacgcccaggccggcgatgatgccgttggcg 403
             |||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||||
Sbjct: 99889 cagtcgtagcagtgcagcgcgatgtatactcccaagccggcgatgatgccgttggcg 99945
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                            
Query: 287      gcgacctggttgcggcggtcgtcgagcgccttccccaccttgccgcacgcgaggctggcc 346
                ||||||||||| ||||| ||||||||| |||| | | |||||  | | ||||  || |||
Sbjct: 13084251 gcgacctggttccggcgctcgtcgagcaccttactcgccttgaggtaagcgatccttgcc 13084192

                                                                         
Query: 347      cagtcgtaccagtgcagcgcgacgtagacgcccaggccggcgatgatgccgttggcg 403
                |||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||||
Sbjct: 13084191 cagtcgtagcagtgcagcgcgatgtatactcccaagccggcgatgatgccgttggcg 13084135



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 118      tacgtagtacgtacggttcc 137
                ||||||||||||||||||||
Sbjct: 10884495 tacgtagtacgtacggttcc 10884476
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>dbj|AK071806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111J10, full
            insert sequence
          Length = 1925

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                        
Query: 287  gcgacctggttgcggcggtcgtcgagcgccttccccaccttgccgcacgcgaggctggcc 346
            ||||||||||| ||||| ||||||||| |||| | | |||||  | | ||||  || |||
Sbjct: 1622 gcgacctggttccggcgctcgtcgagcaccttactcgccttgaggtaagcgatccttgcc 1563

                                                                     
Query: 347  cagtcgtaccagtgcagcgcgacgtagacgcccaggccggcgatgatgccgttggcg 403
            |||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||||
Sbjct: 1562 cagtcgtagcagtgcagcgcgatgtatactcccaagccggcgatgatgccgttggcg 1506
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                            
Query: 287      gcgacctggttgcggcggtcgtcgagcgccttccccaccttgccgcacgcgaggctggcc 346
                ||||||||||| ||||| ||||||||| |||| | | |||||  | | ||||  || |||
Sbjct: 13164430 gcgacctggttccggcgctcgtcgagcaccttactcgccttgaggtaagcgatccttgcc 13164371

                                                                         
Query: 347      cagtcgtaccagtgcagcgcgacgtagacgcccaggccggcgatgatgccgttggcg 403
                |||||||| ||||||||||||| ||| || |||| ||||||||||||||||||||||
Sbjct: 13164370 cagtcgtagcagtgcagcgcgatgtatactcccaagccggcgatgatgccgttggcg 13164314



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 118      tacgtagtacgtacggttcc 137
                ||||||||||||||||||||
Sbjct: 10963684 tacgtagtacgtacggttcc 10963665
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>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017O06, complete sequence
          Length = 151656

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 134   ttcctactactactaccagtag 155
             ||||||||||||||||||||||
Sbjct: 14424 ttcctactactactaccagtag 14445
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>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23,
              complete sequence
          Length = 173764

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 134    ttcctactactactaccagtag 155
              ||||||||||||||||||||||
Sbjct: 114409 ttcctactactactaccagtag 114430
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>gb|AF325217.1| Rhodopseudomonas palustris membrane-bound proton-translocating
            pyrophosphatase gene, complete cds
          Length = 2437

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 373  gacgcccaggccggcgatgatg 394
            ||||||||||||||||||||||
Sbjct: 1281 gacgcccaggccggcgatgatg 1260
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 134     ttcctactactactaccagtag 155
               ||||||||||||||||||||||
Sbjct: 6066855 ttcctactactactaccagtag 6066876
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>ref|XM_417831.1| PREDICTED: Gallus gallus similar to thioredoxin family Trp26
           (LOC419684), mRNA
          Length = 726

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 97  ccaagcacagagcagagccac 117
           |||||||||||||||||||||
Sbjct: 654 ccaagcacagagcagagccac 634
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>gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome 16, complete sequence
          Length = 211640

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 75     aatctcatggagccttttctt 95
              |||||||||||||||||||||
Sbjct: 118828 aatctcatggagccttttctt 118808
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>gb|AC011195.14| Homo sapiens chromosome 17, clone CTD-2200P10, complete sequence
          Length = 152574

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    agccttttctttccaagcaca 105
             |||||||||||||||||||||
Sbjct: 96087 agccttttctttccaagcaca 96067
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>dbj|AK031098.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched
            library, clone:5930404K09 product:hypothetical protein,
            full insert sequence
          Length = 2963

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 75   aatctcatggagccttttctt 95
            |||||||||||||||||||||
Sbjct: 2063 aatctcatggagccttttctt 2083
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>emb|AJ417658.1|POS417658 Pleurotus ostreatus partial mRNA for hypothetical zinc finger
           protein (mv129 gene)
          Length = 356

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 221 agttctatcctcacagctgctcaca 245
           |||||||||||||| ||||||||||
Sbjct: 202 agttctatcctcactgctgctcaca 178
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>emb|BX908786.9| Zebrafish DNA sequence from clone CH211-13O8 in linkage group 3,
             complete sequence
          Length = 121030

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   ttcctactactactaccagta 154
             |||||||||||||||||||||
Sbjct: 39745 ttcctactactactaccagta 39765
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>emb|CT010517.11| Mouse DNA sequence from clone RP23-357P12 on chromosome 16, complete
             sequence
          Length = 188228

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    aatctcatggagccttttctt 95
             |||||||||||||||||||||
Sbjct: 39406 aatctcatggagccttttctt 39426
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>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0045P14, complete sequence
          Length = 121894

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tacgtagtacgtacggttcc 137
             ||||||||||||||||||||
Sbjct: 74015 tacgtagtacgtacggttcc 73996
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>gb|AC095996.9| Rattus norvegicus 18 BAC CH230-13K4 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 54068

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    gtcaaagtacacaaaacatc 53
             ||||||||||||||||||||
Sbjct: 29092 gtcaaagtacacaaaacatc 29073
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>gb|AC121292.9| Mus musculus chromosome 1, clone RP23-172B15, complete sequence
          Length = 193192

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    actactaccagtagtcctaa 161
              ||||||||||||||||||||
Sbjct: 151572 actactaccagtagtcctaa 151553
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>ref|XM_418938.1| PREDICTED: Gallus gallus similar to tRNA selenocysteine associated
           protein (LOC420849), mRNA
          Length = 1319

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ctactactactaccagtagt 156
           ||||||||||||||||||||
Sbjct: 402 ctactactactaccagtagt 421
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>gb|DQ118403.1| Uncultured euryarchaeote Alv-FOS1 fosmid genomic sequence
          Length = 40482

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   atgtcacgatgctccgtgtt 185
             ||||||||||||||||||||
Sbjct: 12497 atgtcacgatgctccgtgtt 12478
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>emb|AL157879.7| Human DNA sequence from clone RP11-110H4 on chromosome 5, complete
              sequence
          Length = 161460

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 117471 tcaaagtacacaaaacatca 117452
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>gb|AC093243.2| Homo sapiens chromosome 5 clone RP11-110H4, complete sequence
          Length = 161460

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 117470 tcaaagtacacaaaacatca 117451
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>gb|AC140139.2| Homo sapiens chromosome 5 clone RP11-1417I21, complete sequence
          Length = 216245

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 69890 tcaaagtacacaaaacatca 69871
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>gb|AC139776.2| Homo sapiens chromosome 5 clone RP11-1005E12, complete sequence
          Length = 217545

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 56960 tcaaagtacacaaaacatca 56941
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>gb|AC139495.2| Homo sapiens chromosome 5 clone RP11-848G14, complete sequence
          Length = 185911

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 67839 tcaaagtacacaaaacatca 67820
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>gb|AC139272.3| Homo sapiens chromosome 5 clone RP11-589F5, complete sequence
          Length = 179723

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 40671 tcaaagtacacaaaacatca 40652
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>gb|AC138959.2| Homo sapiens chromosome 5 clone RP11-880C13, complete sequence
          Length = 186787

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 121507 tcaaagtacacaaaacatca 121488
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>gb|AC138866.2| Homo sapiens chromosome 5 clone RP11-1415C14, complete sequence
          Length = 213824

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 135883 tcaaagtacacaaaacatca 135864
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>gb|AC146949.1| Homo sapiens chromosome 5 clone RP11-1198D22, complete sequence
          Length = 205574

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 69198 tcaaagtacacaaaacatca 69217
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>gb|AC145129.2| Homo sapiens chromosome 5 clone RP11-1080P5, complete sequence
          Length = 171363

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 138164 tcaaagtacacaaaacatca 138145
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>gb|AC145034.2| Homo sapiens chromosome 5 clone RP11-1414O21, complete sequence
          Length = 210205

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 35263 tcaaagtacacaaaacatca 35244
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>gb|AC146944.1| Homo sapiens chromosome 5 clone RP11-497H16, complete sequence
          Length = 196579

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 163380 tcaaagtacacaaaacatca 163361
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>gb|AC138957.2| Homo sapiens chromosome 5 clone RP11-846E4, complete sequence
          Length = 177801

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 100578 tcaaagtacacaaaacatca 100559
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>gb|AC139505.2| Homo sapiens chromosome 5 clone RP11-910M8, complete sequence
          Length = 202970

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 123447 tcaaagtacacaaaacatca 123466
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>gb|AC138928.2| Homo sapiens chromosome 5 clone RP11-674O19, complete sequence
          Length = 166615

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 100577 tcaaagtacacaaaacatca 100558
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>gb|AC002432.1| Homo sapiens BAC clone CTA-317G18 from 7, complete sequence
          Length = 143427

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     caagaatctcatggagcctt 90
              ||||||||||||||||||||
Sbjct: 118105 caagaatctcatggagcctt 118086
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>gb|AC145144.2| Homo sapiens chromosome 5 clone RP11-1432L1, complete sequence
          Length = 211638

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 94767 tcaaagtacacaaaacatca 94786
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>gb|AC145102.2| Homo sapiens chromosome 5 clone RP11-696L12, complete sequence
          Length = 186481

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 66027 tcaaagtacacaaaacatca 66046
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>gb|AC139510.3| Homo sapiens chromosome 5 clone RP11-977J23, complete sequence
          Length = 179309

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 60703 tcaaagtacacaaaacatca 60722
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>gb|AC139507.2| Homo sapiens chromosome 5 clone RP11-937A6, complete sequence
          Length = 175073

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 92642 tcaaagtacacaaaacatca 92623
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>gb|AC139463.2| Homo sapiens chromosome 5 clone RPCI-11_1264N5, complete sequence
          Length = 202179

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 17147 tcaaagtacacaaaacatca 17128
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>gb|AC139277.2| Homo sapiens chromosome 5 clone RP11-619K7, complete sequence
          Length = 199996

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 33205 tcaaagtacacaaaacatca 33224
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>gb|AC138911.2| Homo sapiens chromosome 5 clone RP11-618O22, complete sequence
          Length = 191992

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 96887 tcaaagtacacaaaacatca 96868
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>gb|AC132802.2| Homo sapiens chromosome 5 clone CTC-273M15, complete sequence
          Length = 162703

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 105011 tcaaagtacacaaaacatca 104992
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>emb|AL009030.15|HS28I24 Human DNA sequence from clone RP1-28I24 on chromosome 5 Contains the 5'
             end of the spinal muscular dystrophy region gene (SMA3),
             two beta-glucuronidase pseudogenes and two novel
             pseudogenes containing four membrane protein-like protein
             repeats, one CpG islands, ESTs, GSSs and STSs, complete
             sequence
          Length = 222252

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 60231 tcaaagtacacaaaacatca 60212
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>gb|AC182492.2| Pan troglodytes BAC clone CH251-294F23 from chromosome 5, complete
             sequence
          Length = 179551

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 93927 tcaaagtacacaaaacatca 93946
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>gb|AC006069.3| Arabidopsis thaliana chromosome 2 clone T8O11 map rga, complete
             sequence
          Length = 89138

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 24715 tcaaagtacacaaaacatca 24696
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>gb|AC093247.3| Homo sapiens chromosome 5 clone RP11-138M1, complete sequence
          Length = 80828

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 61715 tcaaagtacacaaaacatca 61734
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>emb|CR406308.1| Gallus gallus finished cDNA, clone ChEST864j2
          Length = 1056

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ctactactactaccagtagt 156
           ||||||||||||||||||||
Sbjct: 143 ctactactactaccagtagt 162
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>gb|AC010237.8|AC010237 Homo sapiens chromosome 5 clone CTC-348J20, complete sequence
          Length = 168814

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 19151 tcaaagtacacaaaacatca 19170
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>emb|BX932376.2| Gallus gallus finished cDNA, clone ChEST96n4
          Length = 1293

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ctactactactaccagtagt 156
           ||||||||||||||||||||
Sbjct: 378 ctactactactaccagtagt 397
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>gb|AC139500.2| Homo sapiens chromosome 5 clone RP11-864E4, complete sequence
          Length = 194350

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 76197 tcaaagtacacaaaacatca 76178
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>gb|AC138827.3| Homo sapiens chromosome 5 clone RP11-1151M9, complete sequence
          Length = 149397

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   tcaaagtacacaaaacatca 54
            ||||||||||||||||||||
Sbjct: 5628 tcaaagtacacaaaacatca 5647
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>gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, complete sequence
          Length = 185457

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   tcaaagtacacaaaacatca 54
            ||||||||||||||||||||
Sbjct: 2723 tcaaagtacacaaaacatca 2742
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 374    acgcccaggccggcgatgatgccg 397
              ||||||||||||||||| ||||||
Sbjct: 507929 acgcccaggccggcgatcatgccg 507952
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>emb|BX950487.1| Gallus gallus finished cDNA, clone ChEST544l1
          Length = 786

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ctactactactaccagtagt 156
           ||||||||||||||||||||
Sbjct: 501 ctactactactaccagtagt 520
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>gb|AC140175.2| Homo sapiens chromosome 5 clone RP11-833G1, complete sequence
          Length = 161671

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 66556 tcaaagtacacaaaacatca 66537
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>gb|AC108108.2| Homo sapiens chromosome 5 clone RP11-260M21, complete sequence
          Length = 173597

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 35707 tcaaagtacacaaaacatca 35688
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>gb|AC118459.2| Homo sapiens chromosome 5 clone RP11-124L9, complete sequence
          Length = 146061

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 11716 tcaaagtacacaaaacatca 11735
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>gb|AC137781.2| Homo sapiens chromosome 5 clone RP11-1108I11, complete sequence
          Length = 161893

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 42517 tcaaagtacacaaaacatca 42498
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 374     acgcccaggccggcgatgatgccg 397
               ||||||||| ||||||||||||||
Sbjct: 2314726 acgcccagggcggcgatgatgccg 2314749
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>gb|AC138409.1| Homo sapiens chromosome 5 clone RP11-1023L17, complete sequence
          Length = 187740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tcaaagtacacaaaacatca 54
              ||||||||||||||||||||
Sbjct: 122181 tcaaagtacacaaaacatca 122162
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>gb|AC131392.2| Homo sapiens chromosome 5 clone RP11-98J23, complete sequence
          Length = 154803

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 55896 tcaaagtacacaaaacatca 55877
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 380    aggccggcgatgatgccgttggcg 403
              |||||||||||||||||| |||||
Sbjct: 563173 aggccggcgatgatgccgctggcg 563150
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>gb|AC134334.3| Mus musculus BAC clone RP24-143M4 from 9, complete sequence
          Length = 158518

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 6     aatcaatgtgagcattgccatcat 29
             |||||||||||| |||||||||||
Sbjct: 40063 aatcaatgtgagaattgccatcat 40040
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>gb|AC154280.1| Mus musculus BAC clone RP24-271G1 from 9, complete sequence
          Length = 159922

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     aatcaatgtgagcattgccatcat 29
             |||||||||||| |||||||||||
Sbjct: 39763 aatcaatgtgagaattgccatcat 39786
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>gb|AC157664.2| Gallus gallus BAC clone CH261-174B17 from chromosome unknown, complete
              sequence
          Length = 214968

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     gccttttctttccaagcaca 105
              ||||||||||||||||||||
Sbjct: 191214 gccttttctttccaagcaca 191195
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>gb|AC132801.2| Homo sapiens chromosome 5 clone CTC-202O15, complete sequence
          Length = 116702

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tcaaagtacacaaaacatca 54
             ||||||||||||||||||||
Sbjct: 70425 tcaaagtacacaaaacatca 70406
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>gb|AC167020.3| Mus musculus BAC clone RP23-201I6 from chromosome 1, complete sequence
          Length = 209249

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    actactaccagtagtcctaa 161
              ||||||||||||||||||||
Sbjct: 178622 actactaccagtagtcctaa 178641
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>dbj|AB059297.1| Human immunodeficiency virus type 1 env gene for envelope
           glycoprotein, partial cds, clone:pKNI10
          Length = 1095

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 137 ctactactactaccagtagtccta 160
           |||||||||||||||||| |||||
Sbjct: 50  ctactactactaccagtactccta 73


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,994,597
Number of Sequences: 3902068
Number of extensions: 2994597
Number of successful extensions: 67264
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66874
Number of HSP's gapped (non-prelim): 386
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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