ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK103120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
2gb|AY112010.1| Zea mays CL5228_1 mRNA sequence 66 1e-07
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
4dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
5gb|AC007470.12| Drosophila melanogaster clone BACR14H22, complet... 46 0.11
6gb|AE003633.3| Drosophila melanogaster chromosome 2L, section 42... 46 0.11
7emb|BX927262.9| Zebrafish DNA sequence from clone CH211-276D15 i... 42 1.7
8gb|AC087280.11| Homo sapiens chromosome 11, clone RP11-560B16, c... 42 1.7
9gb|AF321237.1|AF321237 Homo sapiens chromosome 11p15.4 clone RPC... 42 1.7
10emb|BX908385.10| Zebrafish DNA sequence from clone CH211-282N12 ... 42 1.7
11emb|BX936304.7| Zebrafish DNA sequence from clone CH211-206G24 i... 42 1.7
12gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 6.6
13gb|AY632078.1| Clonorchis sinensis ubiquitin-conjugating enzyme ... 40 6.6
14gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 6.6
15emb|Z81538.1|CEF45H10 Caenorhabditis elegans Cosmid F45H10, comp... 40 6.6
16ref|XM_445933.1| Candida glabrata CBS138, CAGL0E05632g partial mRNA 40 6.6
17emb|Z82186.1|HS49D8 Human DNA sequence from clone CITF22-49D8 on... 40 6.6
18emb|AL359175.10| Human DNA sequence from clone RP11-213K14 on ch... 40 6.6
19gb|AC093120.4| Mus musculus Strain C57BL6/J Chromosome 6 BAC, RP... 40 6.6
20gb|AC163627.4| Mus musculus BAC clone RP23-341E13 from chromosom... 40 6.6
21emb|CR380951.1| Candida glabrata strain CBS138 chromosome E comp... 40 6.6
22emb|AL929358.1|PFA929358 Plasmodium falciparum strain 3D7, chrom... 40 6.6
23gb|AC093158.2| Homo sapiens chromosome 1 clone RP11-439H8, compl... 40 6.6
24gb|AC158127.3| Mus musculus chromosome 19, clone RP23-135N12, co... 40 6.6
25gb|AC108836.23| Mus musculus chromosome 19, clone RP23-276L15, c... 40 6.6

>dbj|AK103120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119I02, full
            insert sequence
          Length = 1771

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 371  ttagatgtgccgccaaagctggaccctgaagctgtagccccgcctccaaatggtgtagag 430
            |||||||| || ||||||||||| |||||||||||||| || ||||| || || ||||| 
Sbjct: 1457 ttagatgtaccaccaaagctggatcctgaagctgtagctccacctccgaacggcgtagaa 1398

                                                        
Query: 431  aatagtgaagttccagttaaagcaggcgttgaaggaaaagatgg 474
            || ||||| ||||||  |||||| |||||||||| |||||||||
Sbjct: 1397 aacagtgaggttccacctaaagcgggcgttgaagcaaaagatgg 1354



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>gb|AY112010.1| Zea mays CL5228_1 mRNA sequence
          Length = 948

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 383 ccaaagctggaccctgaagctgtagccccgcctccaaatggtgtagagaatag 435
           ||||||||||| |||||||||||||| || |||||||| |||||||| |||||
Sbjct: 240 ccaaagctggaacctgaagctgtagctccacctccaaacggtgtagaaaatag 292



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 373      agatgtgccgccaaagctggaccctgaagctgtagc 408
                |||||| || ||||||||||| ||||||||||||||
Sbjct: 16954601 agatgtaccaccaaagctggatcctgaagctgtagc 16954636



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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 373   agatgtgccgccaaagctggaccctgaagctgtagc 408
             |||||| || ||||||||||| ||||||||||||||
Sbjct: 84414 agatgtaccaccaaagctggatcctgaagctgtagc 84449



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>gb|AC007470.12| Drosophila melanogaster clone BACR14H22, complete sequence
          Length = 175977

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 120   ctaaaaataggaatgctgagctc 142
             |||||||||||||||||||||||
Sbjct: 85079 ctaaaaataggaatgctgagctc 85101



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>gb|AE003633.3| Drosophila melanogaster chromosome 2L, section 42 of 83 of the complete
              sequence
          Length = 266175

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 120    ctaaaaataggaatgctgagctc 142
              |||||||||||||||||||||||
Sbjct: 150873 ctaaaaataggaatgctgagctc 150851



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>emb|BX927262.9| Zebrafish DNA sequence from clone CH211-276D15 in linkage group 5,
             complete sequence
          Length = 170455

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 92    tgttaatacaagtttacaacc 112
             |||||||||||||||||||||
Sbjct: 32146 tgttaatacaagtttacaacc 32126



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>gb|AC087280.11| Homo sapiens chromosome 11, clone RP11-560B16, complete sequence
          Length = 173611

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   gctgagctctgttatcactga 154
             |||||||||||||||||||||
Sbjct: 55161 gctgagctctgttatcactga 55141



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>gb|AF321237.1|AF321237 Homo sapiens chromosome 11p15.4 clone RPC11-610i20 P2-containing
             olfactory receptor gene cluster, complete sequence
          Length = 111126

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   gctgagctctgttatcactga 154
             |||||||||||||||||||||
Sbjct: 71959 gctgagctctgttatcactga 71979



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>emb|BX908385.10| Zebrafish DNA sequence from clone CH211-282N12 in linkage group 18,
             complete sequence
          Length = 139547

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   tggaaaattaattacaagttt 271
             |||||||||||||||||||||
Sbjct: 68578 tggaaaattaattacaagttt 68558



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>emb|BX936304.7| Zebrafish DNA sequence from clone CH211-206G24 in linkage group 18,
             complete sequence
          Length = 167305

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   tggaaaattaattacaagttt 271
             |||||||||||||||||||||
Sbjct: 99243 tggaaaattaattacaagttt 99263



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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 451     agcaggcgttgaaggaaaagatgg 474
               ||||| ||||||||||||||||||
Sbjct: 3279532 agcagtcgttgaaggaaaagatgg 3279509



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>gb|AY632078.1| Clonorchis sinensis ubiquitin-conjugating enzyme mRNA, complete cds
          Length = 862

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 ccaagcacttgacaagatat 230
           ||||||||||||||||||||
Sbjct: 435 ccaagcacttgacaagatat 416



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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 451     agcaggcgttgaaggaaaagatgg 474
               ||||| ||||||||||||||||||
Sbjct: 3279702 agcagtcgttgaaggaaaagatgg 3279679



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>emb|Z81538.1|CEF45H10 Caenorhabditis elegans Cosmid F45H10, complete sequence
          Length = 19104

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   tatatagctctcctagaatt 247
             ||||||||||||||||||||
Sbjct: 18131 tatatagctctcctagaatt 18112



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>ref|XM_445933.1| Candida glabrata CBS138, CAGL0E05632g partial mRNA
          Length = 1797

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  accaagcacttgacaagata 229
            ||||||||||||||||||||
Sbjct: 1162 accaagcacttgacaagata 1143



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>emb|Z82186.1|HS49D8 Human DNA sequence from clone CITF22-49D8 on chromosome 22, complete
             sequence
          Length = 35860

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   ccccgcctccaaatggtgta 427
             ||||||||||||||||||||
Sbjct: 34596 ccccgcctccaaatggtgta 34615



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>emb|AL359175.10| Human DNA sequence from clone RP11-213K14 on chromosome 10 Contains
             part of a variant of the NEBL gene for the nebulette
             protein (actin-binding Z-disc protein) and an eukaryotic
             translation initiation factor 4B (EIF4B)(EIF-4B)
             pseudogene, complete sequence
          Length = 155290

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   agaattgcctggaaaattaa 261
             ||||||||||||||||||||
Sbjct: 83247 agaattgcctggaaaattaa 83266



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>gb|AC093120.4| Mus musculus Strain C57BL6/J Chromosome 6 BAC, RP23-125A24, Complete
              Sequence, complete sequence
          Length = 187794

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    gaaggaaaagatgggctaat 480
              ||||||||||||||||||||
Sbjct: 107215 gaaggaaaagatgggctaat 107196



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>gb|AC163627.4| Mus musculus BAC clone RP23-341E13 from chromosome 6, complete sequence
          Length = 191467

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    gaaggaaaagatgggctaat 480
              ||||||||||||||||||||
Sbjct: 189870 gaaggaaaagatgggctaat 189851



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>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    accaagcacttgacaagata 229
              ||||||||||||||||||||
Sbjct: 557254 accaagcacttgacaagata 557273



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>emb|AL929358.1|PFA929358 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5
          Length = 254050

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 251   tggaaaattaattacaagtttttt 274
             ||||||||||||||||||| ||||
Sbjct: 82572 tggaaaattaattacaagtatttt 82595



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>gb|AC093158.2| Homo sapiens chromosome 1 clone RP11-439H8, complete sequence
          Length = 179582

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    aattgcctggaaaattaatt 263
              ||||||||||||||||||||
Sbjct: 138778 aattgcctggaaaattaatt 138759



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>gb|AC158127.3| Mus musculus chromosome 19, clone RP23-135N12, complete sequence
          Length = 217544

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   atgctgagctctgttatcactgag 155
             |||||||||||||| |||||||||
Sbjct: 13482 atgctgagctctgtaatcactgag 13505



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>gb|AC108836.23| Mus musculus chromosome 19, clone RP23-276L15, complete sequence
          Length = 196065

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 132    atgctgagctctgttatcactgag 155
              |||||||||||||| |||||||||
Sbjct: 124042 atgctgagctctgtaatcactgag 124065


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,320,778
Number of Sequences: 3902068
Number of extensions: 4320778
Number of successful extensions: 75154
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75061
Number of HSP's gapped (non-prelim): 93
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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