Clone Name | rbart17b12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK103120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119I02, full insert sequence Length = 1771 Score = 87.7 bits (44), Expect = 3e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 371 ttagatgtgccgccaaagctggaccctgaagctgtagccccgcctccaaatggtgtagag 430 |||||||| || ||||||||||| |||||||||||||| || ||||| || || ||||| Sbjct: 1457 ttagatgtaccaccaaagctggatcctgaagctgtagctccacctccgaacggcgtagaa 1398 Query: 431 aatagtgaagttccagttaaagcaggcgttgaaggaaaagatgg 474 || ||||| |||||| |||||| |||||||||| ||||||||| Sbjct: 1397 aacagtgaggttccacctaaagcgggcgttgaagcaaaagatgg 1354
>gb|AY112010.1| Zea mays CL5228_1 mRNA sequence Length = 948 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 383 ccaaagctggaccctgaagctgtagccccgcctccaaatggtgtagagaatag 435 ||||||||||| |||||||||||||| || |||||||| |||||||| ||||| Sbjct: 240 ccaaagctggaacctgaagctgtagctccacctccaaacggtgtagaaaatag 292
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 373 agatgtgccgccaaagctggaccctgaagctgtagc 408 |||||| || ||||||||||| |||||||||||||| Sbjct: 16954601 agatgtaccaccaaagctggatcctgaagctgtagc 16954636
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 373 agatgtgccgccaaagctggaccctgaagctgtagc 408 |||||| || ||||||||||| |||||||||||||| Sbjct: 84414 agatgtaccaccaaagctggatcctgaagctgtagc 84449
>gb|AC007470.12| Drosophila melanogaster clone BACR14H22, complete sequence Length = 175977 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 120 ctaaaaataggaatgctgagctc 142 ||||||||||||||||||||||| Sbjct: 85079 ctaaaaataggaatgctgagctc 85101
>gb|AE003633.3| Drosophila melanogaster chromosome 2L, section 42 of 83 of the complete sequence Length = 266175 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 120 ctaaaaataggaatgctgagctc 142 ||||||||||||||||||||||| Sbjct: 150873 ctaaaaataggaatgctgagctc 150851
>emb|BX927262.9| Zebrafish DNA sequence from clone CH211-276D15 in linkage group 5, complete sequence Length = 170455 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 tgttaatacaagtttacaacc 112 ||||||||||||||||||||| Sbjct: 32146 tgttaatacaagtttacaacc 32126
>gb|AC087280.11| Homo sapiens chromosome 11, clone RP11-560B16, complete sequence Length = 173611 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 gctgagctctgttatcactga 154 ||||||||||||||||||||| Sbjct: 55161 gctgagctctgttatcactga 55141
>gb|AF321237.1|AF321237 Homo sapiens chromosome 11p15.4 clone RPC11-610i20 P2-containing olfactory receptor gene cluster, complete sequence Length = 111126 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 gctgagctctgttatcactga 154 ||||||||||||||||||||| Sbjct: 71959 gctgagctctgttatcactga 71979
>emb|BX908385.10| Zebrafish DNA sequence from clone CH211-282N12 in linkage group 18, complete sequence Length = 139547 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 tggaaaattaattacaagttt 271 ||||||||||||||||||||| Sbjct: 68578 tggaaaattaattacaagttt 68558
>emb|BX936304.7| Zebrafish DNA sequence from clone CH211-206G24 in linkage group 18, complete sequence Length = 167305 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 tggaaaattaattacaagttt 271 ||||||||||||||||||||| Sbjct: 99243 tggaaaattaattacaagttt 99263
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 451 agcaggcgttgaaggaaaagatgg 474 ||||| |||||||||||||||||| Sbjct: 3279532 agcagtcgttgaaggaaaagatgg 3279509
>gb|AY632078.1| Clonorchis sinensis ubiquitin-conjugating enzyme mRNA, complete cds Length = 862 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ccaagcacttgacaagatat 230 |||||||||||||||||||| Sbjct: 435 ccaagcacttgacaagatat 416
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 451 agcaggcgttgaaggaaaagatgg 474 ||||| |||||||||||||||||| Sbjct: 3279702 agcagtcgttgaaggaaaagatgg 3279679
>emb|Z81538.1|CEF45H10 Caenorhabditis elegans Cosmid F45H10, complete sequence Length = 19104 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tatatagctctcctagaatt 247 |||||||||||||||||||| Sbjct: 18131 tatatagctctcctagaatt 18112
>ref|XM_445933.1| Candida glabrata CBS138, CAGL0E05632g partial mRNA Length = 1797 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 accaagcacttgacaagata 229 |||||||||||||||||||| Sbjct: 1162 accaagcacttgacaagata 1143
>emb|Z82186.1|HS49D8 Human DNA sequence from clone CITF22-49D8 on chromosome 22, complete sequence Length = 35860 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 ccccgcctccaaatggtgta 427 |||||||||||||||||||| Sbjct: 34596 ccccgcctccaaatggtgta 34615
>emb|AL359175.10| Human DNA sequence from clone RP11-213K14 on chromosome 10 Contains part of a variant of the NEBL gene for the nebulette protein (actin-binding Z-disc protein) and an eukaryotic translation initiation factor 4B (EIF4B)(EIF-4B) pseudogene, complete sequence Length = 155290 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 agaattgcctggaaaattaa 261 |||||||||||||||||||| Sbjct: 83247 agaattgcctggaaaattaa 83266
>gb|AC093120.4| Mus musculus Strain C57BL6/J Chromosome 6 BAC, RP23-125A24, Complete Sequence, complete sequence Length = 187794 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gaaggaaaagatgggctaat 480 |||||||||||||||||||| Sbjct: 107215 gaaggaaaagatgggctaat 107196
>gb|AC163627.4| Mus musculus BAC clone RP23-341E13 from chromosome 6, complete sequence Length = 191467 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gaaggaaaagatgggctaat 480 |||||||||||||||||||| Sbjct: 189870 gaaggaaaagatgggctaat 189851
>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence Length = 687501 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 accaagcacttgacaagata 229 |||||||||||||||||||| Sbjct: 557254 accaagcacttgacaagata 557273
>emb|AL929358.1|PFA929358 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5 Length = 254050 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 tggaaaattaattacaagtttttt 274 ||||||||||||||||||| |||| Sbjct: 82572 tggaaaattaattacaagtatttt 82595
>gb|AC093158.2| Homo sapiens chromosome 1 clone RP11-439H8, complete sequence Length = 179582 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 aattgcctggaaaattaatt 263 |||||||||||||||||||| Sbjct: 138778 aattgcctggaaaattaatt 138759
>gb|AC158127.3| Mus musculus chromosome 19, clone RP23-135N12, complete sequence Length = 217544 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 atgctgagctctgttatcactgag 155 |||||||||||||| ||||||||| Sbjct: 13482 atgctgagctctgtaatcactgag 13505
>gb|AC108836.23| Mus musculus chromosome 19, clone RP23-276L15, complete sequence Length = 196065 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 atgctgagctctgttatcactgag 155 |||||||||||||| ||||||||| Sbjct: 124042 atgctgagctctgtaatcactgag 124065 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,320,778 Number of Sequences: 3902068 Number of extensions: 4320778 Number of successful extensions: 75154 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75061 Number of HSP's gapped (non-prelim): 93 length of query: 491 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 469 effective length of database: 17,147,199,772 effective search space: 8042036693068 effective search space used: 8042036693068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)