ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HSP72_ARATH (P22954) Heat shock cognate 70 kDa protein 2 (Hsc70.2) 28 4.7
2ROS_AVISU (P00529) Tyrosine-protein kinase transforming protein ... 28 4.7
3HSP71_ARATH (P22953) Heat shock cognate 70 kDa protein 1 (Hsc70.1) 28 4.7
4SPEA_PROMP (Q7V3M9) Biosynthetic arginine decarboxylase (EC 4.1.... 28 4.7
5ROS_CHICK (P08941) Proto-oncogene tyrosine-protein kinase ROS pr... 28 4.7
6RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-assoc... 28 4.7
7PYRC_SULAC (O08357) Dihydroorotase (EC 3.5.2.3) (DHOase) 28 6.1
8US01_HCMVA (P09714) Hypothetical protein HQLF3 28 6.1

>HSP72_ARATH (P22954) Heat shock cognate 70 kDa protein 2 (Hsc70.2)|
          Length = 653

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -2

Query: 220 SGGAGPKIEEVD 185
           SGGAGPKIEEVD
Sbjct: 642 SGGAGPKIEEVD 653



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>ROS_AVISU (P00529) Tyrosine-protein kinase transforming protein ros (EC|
           2.7.10.1)
          Length = 402

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 215 RCWAQDRGGRLS*FSFIVRNTLYAICFGPGCQSYPLG*K 99
           RCWAQD   R +   F +++ L  I   P C SY LG K
Sbjct: 350 RCWAQDPHNRPT--FFYIQHKLQEIRHSPLCFSYFLGDK 386



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>HSP71_ARATH (P22953) Heat shock cognate 70 kDa protein 1 (Hsc70.1)|
          Length = 651

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -2

Query: 220 SGGAGPKIEEVD 185
           SGGAGPKIEEVD
Sbjct: 640 SGGAGPKIEEVD 651



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>SPEA_PROMP (Q7V3M9) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)|
          Length = 648

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 68  TDTLVSRLNKIFNPGDMIGTQGRNKWRIGYFSL*KRTNL 184
           TD    +LNK +   D I T G +KW   YFS+    N+
Sbjct: 2   TDFDTKKLNKKWTIEDSISTYGIDKWGEKYFSINSEGNI 40



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>ROS_CHICK (P08941) Proto-oncogene tyrosine-protein kinase ROS precursor (EC|
            2.7.10.1) (c-ros-1)
          Length = 2311

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 215  RCWAQDRGGRLS*FSFIVRNTLYAICFGPGCQSYPLG*K 99
            RCWAQD   R +   F +++ L  I   P C SY LG K
Sbjct: 2213 RCWAQDPHNRPT--FFYIQHKLQEIRHSPLCFSYFLGDK 2249



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>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 20/69 (28%)
 Frame = +1

Query: 121  WHPGPKQMAYRVFLTMKEN*LSRPPRSWA--------------------QHRRWEPAHHR 240
            W PG   +A+ V+L  +E   +RP   WA                        WEP   R
Sbjct: 900  WVPGNSNLAHAVYLNGEECPPARPSTYWATFCNLRPGTLYQARVEAQIPSQGPWEPGWER 959

Query: 241  PCLRACQHQ 267
            P LRA   Q
Sbjct: 960  PELRAATLQ 968



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>PYRC_SULAC (O08357) Dihydroorotase (EC 3.5.2.3) (DHOase)|
          Length = 389

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 195 RRSTKLVLFHSEKYPIRHLFRPWVPIISPGLKILFNRETSVSVLTIAMMHVLVIVDFSLM 16
           +  T+ VL  S+K  I H   P+V  I   L+  +  ET+   L    MH+  I +F  +
Sbjct: 141 KEETRYVLEKSKKLKILHPEMPFVSKIERSLRRSYWMETAAINLVKGNMHITHITNFETL 200



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>US01_HCMVA (P09714) Hypothetical protein HQLF3|
          Length = 156

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 39  PKHASLQWLKQIH*SHD 89
           P+HA  QW +Q+H +HD
Sbjct: 60  PEHAEAQWRQQVHAAHD 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,886,937
Number of Sequences: 219361
Number of extensions: 755761
Number of successful extensions: 1990
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1989
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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