Clone Information

BLAST Search Result

Clone Name	rbart17a11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY543544.1\| Triticum aestivum expansin EXPB10 mRNA, complete cds	291	1e-75
2	gb\|U91981.1\|TAU91981 Triticum aestivum pollen allergen homolog m...	283	3e-73
3	gb\|AY589582.1\| Triticum aestivum beta-expansin TaEXPB5 mRNA, com...	210	3e-51
4	gb\|AY543542.1\| Triticum aestivum expansin EXPB8 mRNA, complete cds	141	2e-30
5	gb\|AY589580.1\| Triticum aestivum beta-expansin TaEXPB3 mRNA, com...	96	1e-16
6	gb\|AY543541.1\| Triticum aestivum expansin EXPB7 mRNA, complete cds	96	1e-16
7	gb\|AF261275.1\| Oryza sativa beta-expansin (EXPB7) mRNA, complete...	64	4e-07
8	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	64	4e-07
9	gb\|AC118673.2\| Genomic sequence for Oryza sativa, Nipponbare str...	64	4e-07
10	gb\|AC125411.1\| Genomic sequence for Oryza sativa, Nipponbare str...	64	4e-07
11	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	4e-07
12	gb\|AF485811.1\| Oryza sativa BAC OSJNa0049F05, complete sequence	64	4e-07
13	dbj\|AK061423.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	64	4e-07
14	gb\|BT017478.1\| Zea mays clone EL01N0408G02.c mRNA sequence	54	4e-04
15	gb\|AF332181.1\|AF332181 Zea mays beta-expansin 8 (expB8) mRNA, co...	54	4e-04
16	emb\|AJ295942.1\|FPR295942 Festuca pratensis mRNA for beta expansi...	50	0.007
17	gb\|BT019137.1\| Zea mays clone Contig781.F mRNA sequence	48	0.026
18	emb\|AJ295941.1\|FPR295941 Festuca pratensis mRNA for beta expansi...	48	0.026
19	gb\|AF332175.1\|AF332175 Zea mays beta-expansin 2 (expB2) mRNA, pa...	48	0.026
20	emb\|AJ295940.1\|FPR295940 Festuca pratensis mRNA for beta expansi...	46	0.10
21	emb\|CR942806.6\| Drosophila DNA sequence from clone BACR-16A01, c...	42	1.6
22	emb\|CR942808.9\| Drosophila DNA sequence from clone BACR-5J11, co...	42	1.6
23	emb\|CR942807.3\| Drosophila DNA sequence from clone BACR-12I02, c...	42	1.6
24	gb\|AF332179.1\|AF332179 Zea mays beta-expansin 6 (expB6) mRNA, co...	42	1.6
25	gb\|AY111405.1\| Zea mays CL5426_1 mRNA sequence	42	1.6
26	gb\|AY104151.1\| Zea mays PCO112411 mRNA sequence	42	1.6
27	gb\|CP000161.1\| Drosophila melanogaster genomic scaffold 21100002...	42	1.6
28	gb\|AC113102.8\| Mus musculus chromosome 15, clone RP23-320O9, com...	40	6.3
29	gb\|AY590143.1\| Amazon lily mosaic virus strain TW polyprotein ge...	40	6.3
30	gb\|AC129326.3\| Mus musculus BAC clone RP23-326H12 from chromosom...	40	6.3
31	gb\|AC116451.7\| Mus musculus chromosome 19, clone RP24-273P9, com...	40	6.3
32	gb\|CP000319.1\| Nitrobacter hamburgensis X14, complete genome	40	6.3
33	emb\|AL353768.28\| Human DNA sequence from clone RP11-54O15 on chr...	40	6.3
34	emb\|X04465.1\|CHMPXX Marchantia polymorpha chloroplast genome DNA	40	6.3
35	emb\|X01647.1\|CHMPTRN Marchantia polymorpha chloroplast DNA for t...	40	6.3
36	gb\|AC122937.4\| Mus musculus BAC clone RP23-24P3 from chromosome ...	40	6.3
37	emb\|BX088524.16\| Zebrafish DNA sequence from clone CH211-215A9 i...	40	6.3
38	gb\|AY589578.1\| Triticum aestivum beta-expansin TaEXPB1 mRNA, com...	40	6.3
39	gb\|AF125985.1\|AF125985 Brugia malayi HER-1 (her-1) gene, complet...	40	6.3
40	emb\|CR627488.8\| Zebrafish DNA sequence from clone CH211-242B23 i...	40	6.3
41	gb\|AC165437.5\| Mus musculus chromosome 15, clone RP23-285N11, co...	40	6.3
42	emb\|AL845438.21\| Zebrafish DNA sequence from clone CH211-120G21 ...	40	6.3

>gb|AY543544.1| Triticum aestivum expansin EXPB10 mRNA, complete cds
          Length = 1132

 Score =  291 bits (147), Expect = 1e-75
 Identities = 231/259 (89%)
 Strand = Plus / Minus

                                                                       
Query: 205 tagtacctagcaataacttaaaatccttcgatcctcgtaaatagggaacctccagatgac 264
           |||| ||| |||||||||||||| | || |||||||  ||||||||| | | | ||||||
Sbjct: 945 tagtgcctggcaataacttaaaaccattagatcctcacaaatagggatcatgctgatgac 886

                                                                       
Query: 265 accaaaatggttaactcggcatcgatcggagaagtgctcaggtaagccaatcaatagaac 324
           ||||||||| ||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct: 885 accaaaatgattaactcggcatcgatcggagaagtacgcacgtaagccaatcaatagaac 826

                                                                       
Query: 325 tggatgttagaccagtaggctttggcctgctgccaatatgccgggatggcattgttggcc 384
           |||| ||| ||||||||||| | | || |||||||||| |||||||||||||||||||||
Sbjct: 825 tggaggttggaccagtaggcatggtccggctgccaataagccgggatggcattgttggcc 766

                                                                       
Query: 385 accagcatctttccggtgtcggtggtgatgcgtatggagaatggcccctgcagcgggcgg 444
           |||||| |||||||||| ||| |||||||||| |||| ||||||||||||||||||||||
Sbjct: 765 accagcgtctttccggtatcgctggtgatgcggatggcgaatggcccctgcagcgggcgg 706

                              
Query: 445 ttggtgtccatgcgccaga 463
           ||||||||||| |||||||
Sbjct: 705 ttggtgtccatccgccaga 687



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 70/77 (90%), Gaps = 6/77 (7%)
 Strand = Plus / Minus

                                                                        
Query: 57   atcaggtatggaactg--atagtggccggggtagcacatggacggatgctactccacttg 114
            |||||| |||||||||  ||||||||||||||||||||||||    ||||||||||||||
Sbjct: 1132 atcaggcatggaactgcgatagtggccggggtagcacatgga----tgctactccacttg 1077

                             
Query: 115  cctagctccttacattt 131
            |||||||||||||||||
Sbjct: 1076 cctagctccttacattt 1060

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>gb|U91981.1|TAU91981 Triticum aestivum pollen allergen homolog mRNA, complete cds
          Length = 1232

 Score =  283 bits (143), Expect = 3e-73
 Identities = 224/251 (89%)
 Strand = Plus / Minus

                                                                       
Query: 216 aataacttaaaatccttcgatcctcgtaaatagggaacctccagatgacaccaaaatggt 275
           |||||||||||||| ||||||| ||||||||||||| | ||| ||||||||||||||| |
Sbjct: 964 aataacttaaaatcattcgatcatcgtaaatagggatcatcctgatgacaccaaaatgat 905

                                                                       
Query: 276 taactcggcatcgatcggagaagtgctcaggtaagccaatcaatagaactggatgttaga 335
           |||| | ||||||||||||||||| | || |||||| ||||| |||||||||| ||| ||
Sbjct: 904 taacccagcatcgatcggagaagtacgcacgtaagcaaatcagtagaactggaggttgga 845

                                                                       
Query: 336 ccagtaggctttggcctgctgccaatatgccgggatggcattgttggccaccagcatctt 395
           ||| ||||| | | ||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct: 844 ccaataggcatggtcctgctgccaataagccgggatggcattgttggcgaccagcgtctt 785

                                                                       
Query: 396 tccggtgtcggtggtgatgcgtatggagaatggcccctgcagcgggcggttggtgtccat 455
           |||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 784 tccggtatcgctggtgatgcggatggagaatggcccctgcaccgggcggttggtgtccat 725

                      
Query: 456 gcgccagacgg 466
            ||||||||||
Sbjct: 724 ccgccagacgg 714



 Score =  111 bits (56), Expect = 2e-21
 Identities = 105/120 (87%), Gaps = 6/120 (5%)
 Strand = Plus / Minus

                                                                        
Query: 14   catccatttggattaatttataatttcgatttgatcacactctatcaggtatggaactg- 72
            |||||||||| ||||||||||||  |  ||| ||||||||| ||||||| ||||||||| 
Sbjct: 1193 catccatttgaattaatttataagcttaattggatcacactttatcaggcatggaactgc 1134

                                                                        
Query: 73   -atagtggccggggtagcacatggacggatgctactccacttgcctagctccttacattt 131
             ||||||||||||||||||||||||    || ||||||||||||||||||||||||||||
Sbjct: 1133 gatagtggccggggtagcacatgga----tgatactccacttgcctagctccttacattt 1078

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>gb|AY589582.1| Triticum aestivum beta-expansin TaEXPB5 mRNA, complete cds
          Length = 939

 Score =  210 bits (106), Expect = 3e-51
 Identities = 145/158 (91%)
 Strand = Plus / Minus

                                                                       
Query: 306 gtaagccaatcaatagaactggatgttagaccagtaggctttggcctgctgccaatatgc 365
           ||||||||||||||||||||||| ||| ||||||||||| | | || |||||||||| ||
Sbjct: 869 gtaagccaatcaatagaactggaggttggaccagtaggcatggtccggctgccaataagc 810

                                                                       
Query: 366 cgggatggcattgttggccaccagcatctttccggtgtcggtggtgatgcgtatggagaa 425
           ||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||| |||
Sbjct: 809 cgggatggcattgttggccaccagcgtctttccggtatcgctggtgatgcggatggcgaa 750

                                                 
Query: 426 tggcccctgcagcgggcggttggtgtccatgcgccaga 463
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 749 tggcccctgcagcgggcggttggtgtccatccgccaga 712



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 tcaggacacacaatcgacga 187
           ||||||||||||||||||||
Sbjct: 928 tcaggacacacaatcgacga 909

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>gb|AY543542.1| Triticum aestivum expansin EXPB8 mRNA, complete cds
          Length = 1078

 Score =  141 bits (71), Expect = 2e-30
 Identities = 131/151 (86%)
 Strand = Plus / Minus

                                                                       
Query: 313 aatcaatagaactggatgttagaccagtaggctttggcctgctgccaatatgccgggatg 372
           |||||||||||||||| ||| |||||||| || ||| || || |||| || |||||||||
Sbjct: 845 aatcaatagaactggacgttggaccagtaagcattgtccggccgccagtacgccgggatg 786

                                                                       
Query: 373 gcattgttggccaccagcatctttccggtgtcggtggtgatgcgtatggagaatggcccc 432
            ||||||||||||| ||| |||| |||| |||| ||||||| || |||||||| ||||||
Sbjct: 785 acattgttggccacaagcgtcttcccggagtcgctggtgatacgcatggagaagggcccc 726

                                          
Query: 433 tgcagcgggcggttggtgtccatgcgccaga 463
           |||||||||||| |||||||||| |||||||
Sbjct: 725 tgcagcgggcggctggtgtccatccgccaga 695

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>gb|AY589580.1| Triticum aestivum beta-expansin TaEXPB3 mRNA, complete cds
          Length = 1013

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 87/100 (87%)
 Strand = Plus / Minus

                                                                       
Query: 364 gccgggatggcattgttggccaccagcatctttccggtgtcggtggtgatgcgtatggag 423
           ||||||||| ||||||||||||||||| |||| |||| |||| |||||||||| ||||||
Sbjct: 810 gccgggatgacattgttggccaccagcttcttgccggagtcgctggtgatgcgcatggag 751

                                                   
Query: 424 aatggcccctgcagcgggcggttggtgtccatgcgccaga 463
           || |||||||| ||  || |||||| |||||| |||||||
Sbjct: 750 aagggcccctggaggcggtggttggagtccatccgccaga 711

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>gb|AY543541.1| Triticum aestivum expansin EXPB7 mRNA, complete cds
          Length = 1056

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 87/100 (87%)
 Strand = Plus / Minus

                                                                       
Query: 364 gccgggatggcattgttggccaccagcatctttccggtgtcggtggtgatgcgtatggag 423
           ||||||||| ||||||||||||||||| |||| |||| |||| |||||||||| ||||||
Sbjct: 842 gccgggatgacattgttggccaccagcttcttgccggagtcgctggtgatgcgcatggag 783

                                                   
Query: 424 aatggcccctgcagcgggcggttggtgtccatgcgccaga 463
           || |||||||| ||  || |||||| |||||| |||||||
Sbjct: 782 aagggcccctggaggcggtggttggagtccatccgccaga 743

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>gb|AF261275.1| Oryza sativa beta-expansin (EXPB7) mRNA, complete cds
          Length = 1210

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 407 tggtgatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 454
           |||||||||| | |||||| ||||||||||||||| ||||||||||||
Sbjct: 942 tggtgatgcggagggagaagggcccctgcagcgggtggttggtgtcca 895

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 407    tggtgatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 454
              |||||||||| | |||||| ||||||||||||||| ||||||||||||
Sbjct: 169338 tggtgatgcggagggagaagggcccctgcagcgggtggttggtgtcca 169291

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>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBb0080O10, from chromosome 3, complete sequence
          Length = 127917

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 407  tggtgatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 454
            |||||||||| | |||||| ||||||||||||||| ||||||||||||
Sbjct: 6405 tggtgatgcggagggagaagggcccctgcagcgggtggttggtgtcca 6358

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>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAb0079B22, from chromosome 3, complete sequence
          Length = 156933

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 407    tggtgatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 454
              |||||||||| | |||||| ||||||||||||||| ||||||||||||
Sbjct: 103338 tggtgatgcggagggagaagggcccctgcagcgggtggttggtgtcca 103291

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 407    tggtgatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 454
              |||||||||| | |||||| ||||||||||||||| ||||||||||||
Sbjct: 169338 tggtgatgcggagggagaagggcccctgcagcgggtggttggtgtcca 169291

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>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
          Length = 162241

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 407   tggtgatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 454
             |||||||||| | |||||| ||||||||||||||| ||||||||||||
Sbjct: 93328 tggtgatgcggagggagaagggcccctgcagcgggtggttggtgtcca 93375

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>dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G02, full
           insert sequence
          Length = 1027

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 407 tggtgatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 454
           |||||||||| | |||||| ||||||||||||||| ||||||||||||
Sbjct: 750 tggtgatgcggagggagaagggcccctgcagcgggtggttggtgtcca 703

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>gb|BT017478.1| Zea mays clone EL01N0408G02.c mRNA sequence
          Length = 832

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 84/103 (81%)
 Strand = Plus / Minus

                                                                       
Query: 364 gccgggatggcattgttggccaccagcatctttccggtgtcggtggtgatgcgtatggag 423
           ||||||||| | |||||||| || ||| |||| ||||  ||| ||  |||||| ||||||
Sbjct: 256 gccgggatgacgttgttggcgacgagcgtcttgccggactcgttgcggatgcggatggag 197

                                                      
Query: 424 aatggcccctgcagcgggcggttggtgtccatgcgccagacgg 466
           || |||  |||||   || ||||||||||||||||||||||||
Sbjct: 196 aagggcggctgcatgcggtggttggtgtccatgcgccagacgg 154

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>gb|AF332181.1|AF332181 Zea mays beta-expansin 8 (expB8) mRNA, complete cds
          Length = 1479

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 84/103 (81%)
 Strand = Plus / Minus

                                                                       
Query: 364 gccgggatggcattgttggccaccagcatctttccggtgtcggtggtgatgcgtatggag 423
           ||||||||| | |||||||| || ||| |||| ||||  ||| ||  |||||| ||||||
Sbjct: 892 gccgggatgacgttgttggcgacgagcgtcttgccggactcgttgcggatgcggatggag 833

                                                      
Query: 424 aatggcccctgcagcgggcggttggtgtccatgcgccagacgg 466
           || |||  |||||   || ||||||||||||||||||||||||
Sbjct: 832 aagggcggctgcatgcggtggttggtgtccatgcgccagacgg 790

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>emb|AJ295942.1|FPR295942 Festuca pratensis mRNA for beta expansin B3 (expB3 gene)
          Length = 1219

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 407 tggtgatgcgtatggagaatggcccctgcagcgggcggttggtgtccatgcgccaga 463
           |||||||||| |||||||| ||| |||| ||  || |||||| ||||||||||||||
Sbjct: 814 tggtgatgcgcatggagaagggcgcctggaggcggtggttggagtccatgcgccaga 758

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>gb|BT019137.1| Zea mays clone Contig781.F mRNA sequence
          Length = 1044

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 443 ggttggtgtccatgcgccagacgg 466
           ||||||||||||||||||||||||
Sbjct: 438 ggttggtgtccatgcgccagacgg 415

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>emb|AJ295941.1|FPR295941 Festuca pratensis mRNA for beta expansin B2 (expB2 gene)
          Length = 1194

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                       
Query: 376 ttgttggccaccagcatctttccggtgtcggtggtgatgcgtatggagaatggcccctgc 435
           |||||||| || |||  ||| |||| |||| |||||||||| |||||||||||| |||| 
Sbjct: 831 ttgttggcgacgagctgcttgccggagtcgctggtgatgcgcatggagaatggcgcctgg 772

                               
Query: 436 agcgggcggttggtgtccat 455
           ||  || |||||| ||||||
Sbjct: 771 agacggtggttggagtccat 752

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>gb|AF332175.1|AF332175 Zea mays beta-expansin 2 (expB2) mRNA, partial cds
          Length = 907

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 443 ggttggtgtccatgcgccagacgg 466
           ||||||||||||||||||||||||
Sbjct: 400 ggttggtgtccatgcgccagacgg 377

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>emb|AJ295940.1|FPR295940 Festuca pratensis mRNA for beta expansin B1 (expB1 gene)
          Length = 1224

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 304 aggtaagccaatcaatagaactg 326
           |||||||||||||||||||||||
Sbjct: 868 aggtaagccaatcaatagaactg 846

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>emb|CR942806.6| Drosophila DNA sequence from clone BACR-16A01, complete sequence
          Length = 167609

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 20    tttggattaatttataatttcgatt 44
             |||||||| ||||||||||||||||
Sbjct: 22864 tttggattgatttataatttcgatt 22888

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>emb|CR942808.9| Drosophila DNA sequence from clone BACR-5J11, complete sequence
          Length = 196868

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 20     tttggattaatttataatttcgatt 44
              |||||||| ||||||||||||||||
Sbjct: 152306 tttggattgatttataatttcgatt 152330

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>emb|CR942807.3| Drosophila DNA sequence from clone BACR-12I02, complete sequence
          Length = 177921

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 20    tttggattaatttataatttcgatt 44
             |||||||| ||||||||||||||||
Sbjct: 93165 tttggattgatttataatttcgatt 93189

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>gb|AF332179.1|AF332179 Zea mays beta-expansin 6 (expB6) mRNA, complete cds
          Length = 1142

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                       
Query: 364 gccgggatggcattgttggccaccagcatctttccggtgtcggtggtgatgcgtatggag 423
           ||||||||| | || ||||||||||||  | | ||||  ||| |||||||||| ||||||
Sbjct: 868 gccgggatgacgttcttggccaccagctgcctgccggactcgttggtgatgcgcatggag 809

                                    
Query: 424 aatggcccctgcagcgggcggttgg 448
           || || ||  | |||||||||||||
Sbjct: 808 aaggggccacggagcgggcggttgg 784

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>gb|AY111405.1| Zea mays CL5426_1 mRNA sequence
          Length = 528

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 364 gccgggatggcattgttggccaccagcatctttccggtgtcggtggtgatgcg 416
           ||||||||| | | ||||||||||||| |||| ||||  ||| ||||||||||
Sbjct: 306 gccgggatgacctggttggccaccagcgtcttgccggactcgttggtgatgcg 358

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>gb|AY104151.1| Zea mays PCO112411 mRNA sequence
          Length = 1171

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                       
Query: 364 gccgggatggcattgttggccaccagcatctttccggtgtcggtggtgatgcgtatggag 423
           ||||||||| | || ||||||||||||  | | ||||  ||| |||||||||| ||||||
Sbjct: 877 gccgggatgacgttcttggccaccagctgcctgccggactcgttggtgatgcgcatggag 818

                                    
Query: 424 aatggcccctgcagcgggcggttgg 448
           || || ||  | |||||||||||||
Sbjct: 817 aaggggccacggagcgggcggttgg 793

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>gb|CP000161.1| Drosophila melanogaster genomic scaffold 211000022278088
          Length = 55860

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 20    tttggattaatttataatttcgatt 44
             |||||||| ||||||||||||||||
Sbjct: 45542 tttggattgatttataatttcgatt 45518

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>gb|AC113102.8| Mus musculus chromosome 15, clone RP23-320O9, complete sequence
          Length = 214071

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 6      ataaacttcatccatttggattaa 29
              ||||||||||| ||||||||||||
Sbjct: 132748 ataaacttcattcatttggattaa 132771

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>gb|AY590143.1| Amazon lily mosaic virus strain TW polyprotein gene, partial cds
          Length = 1523

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  ttggattaatttataatttc 40
           ||||||||||||||||||||
Sbjct: 212 ttggattaatttataatttc 231

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>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete
             sequence
          Length = 184128

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   aaagtagtacctagcaataa 220
             ||||||||||||||||||||
Sbjct: 18075 aaagtagtacctagcaataa 18056

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>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    aaagtagtacctagcaataa 220
              ||||||||||||||||||||
Sbjct: 117254 aaagtagtacctagcaataa 117235

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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 431     cctgcagcgggcggttggtg 450
               ||||||||||||||||||||
Sbjct: 3548740 cctgcagcgggcggttggtg 3548759

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>emb|AL353768.28| Human DNA sequence from clone RP11-54O15 on chromosome 9q22.2-31.1
             Contains part of gene FLJ14675, the 3' end of a novel
             gene, a novel gene and two CpG islands, complete sequence
          Length = 168062

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tttggattaatttataattt 39
             ||||||||||||||||||||
Sbjct: 97148 tttggattaatttataattt 97167

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>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA
          Length = 121024

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ttataatttcgatttgatca 50
             ||||||||||||||||||||
Sbjct: 41566 ttataatttcgatttgatca 41547

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>emb|X01647.1|CHMPTRN Marchantia polymorpha chloroplast DNA for tRNA-Ser(UGA),
            tRNA-Gly(GCC), tRNA-Met(CAU), ORF701, ORF702 and ORF703
          Length = 3381

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   ttataatttcgatttgatca 50
            ||||||||||||||||||||
Sbjct: 1788 ttataatttcgatttgatca 1769

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>gb|AC122937.4| Mus musculus BAC clone RP23-24P3 from chromosome 15, complete sequence
          Length = 196863

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    gaccagtaggctttggcctg 353
              ||||||||||||||||||||
Sbjct: 181178 gaccagtaggctttggcctg 181159

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>emb|BX088524.16| Zebrafish DNA sequence from clone CH211-215A9 in linkage group 10,
             complete sequence
          Length = 228624

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 5     cataaacttcatccatttggattaattt 32
             ||||||||||| ||||||| ||||||||
Sbjct: 98523 cataaacttcagccatttgcattaattt 98496

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>gb|AY589578.1| Triticum aestivum beta-expansin TaEXPB1 mRNA, complete cds
          Length = 1034

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 421 gagaatggcccctgcagcgggcgg 444
           ||||| ||||||||||||||||||
Sbjct: 846 gagaagggcccctgcagcgggcgg 823

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>gb|AF125985.1|AF125985 Brugia malayi HER-1 (her-1) gene, complete cds
          Length = 2411

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 20  tttggattaatttataattt 39
           ||||||||||||||||||||
Sbjct: 814 tttggattaatttataattt 833

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>emb|CR627488.8| Zebrafish DNA sequence from clone CH211-242B23 in linkage group 10,
              complete sequence
          Length = 137433

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 5      cataaacttcatccatttggattaattt 32
              ||||||||||| ||||||| ||||||||
Sbjct: 126876 cataaacttcagccatttgcattaattt 126849

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>gb|AC165437.5| Mus musculus chromosome 15, clone RP23-285N11, complete sequence
          Length = 228289

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   gaccagtaggctttggcctg 353
             ||||||||||||||||||||
Sbjct: 31122 gaccagtaggctttggcctg 31103

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>emb|AL845438.21| Zebrafish DNA sequence from clone CH211-120G21 in linkage group 10,
             complete sequence
          Length = 175059

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 5     cataaacttcatccatttggattaattt 32
             ||||||||||| ||||||| ||||||||
Sbjct: 75447 cataaacttcagccatttgcattaattt 75420


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,277,526
Number of Sequences: 3902068
Number of extensions: 3277526
Number of successful extensions: 59832
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 59720
Number of HSP's gapped (non-prelim): 109
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result