ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
3dbj|AK071348.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
4ref|XM_472892.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
5gb|AY109042.1| Zea mays PCO063924 mRNA sequence 58 3e-05
6dbj|AK104848.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
7emb|AJ421525.2|ZMA421525 Zea mays mRNA for transglutaminase (tgz... 44 0.41
8emb|AJ488103.1|ZMA488103 Zea mays mRNA for transglutaminase (tgz... 44 0.41
9gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, co... 42 1.6
10ref|XM_482099.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
11ref|XM_507211.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.5
12ref|NM_194782.1| Oryza sativa (japonica cultivar-group) unknown ... 40 6.5
13ref|XM_517932.1| PREDICTED: Pan troglodytes similar to T-cell-sp... 40 6.5
14gb|BC072023.1| Homo sapiens transcription factor 7 (T-cell speci... 40 6.5
15gb|AC109605.14| Mus musculus strain 129S6/SvEvTac clone rp22-470... 40 6.5
16gb|AC146777.27| Medicago truncatula clone mth2-173c10, complete ... 40 6.5
17emb|AL589655.5| Human DNA sequence from clone RP11-420A21 on chr... 40 6.5
18emb|AL365402.17| Human DNA sequence from clone RP11-445K1 on chr... 40 6.5
19gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
20emb|Z47362.1|HSTCF1E H.sapiens TCF-1 mRNA for T cell factor 1 sp... 40 6.5
21emb|X63901.1|HSTCF1G Homo sapiens TCF-1 gene 40 6.5
22emb|X59871.1|HSTCF1C Human TCF-1 mRNA for T cell factor 1 (splic... 40 6.5
23emb|X59870.1|HSTCF1B Human TCF-1 mRNA for T cell factor 1 (splic... 40 6.5
24emb|X59869.1|HSTCF1A Human TCF-1 mRNA for T cell factor 1 (splic... 40 6.5
25emb|AL929355.1|PFA929355 Plasmodium falciparum strain 3D7, chrom... 40 6.5
26emb|AL645802.11| Mouse DNA sequence from clone RP23-128D9 on chr... 40 6.5
27ref|NM_213648.1| Homo sapiens transcription factor 7 (T-cell spe... 40 6.5
28ref|NM_201634.1| Homo sapiens transcription factor 7 (T-cell spe... 40 6.5
29ref|NM_003202.2| Homo sapiens transcription factor 7 (T-cell spe... 40 6.5
30ref|NM_201633.1| Homo sapiens transcription factor 7 (T-cell spe... 40 6.5
31ref|NM_201632.1| Homo sapiens transcription factor 7 (T-cell spe... 40 6.5
32dbj|AK131428.1| Homo sapiens cDNA FLJ16553 fis, clone SPLEN2004611 40 6.5
33dbj|AK093683.1| Homo sapiens cDNA FLJ36364 fis, clone THYMU20077... 40 6.5
34dbj|AK093530.1| Homo sapiens cDNA FLJ36211 fis, clone THYMU20003... 40 6.5
35dbj|AK057580.1| Homo sapiens cDNA FLJ33018 fis, clone THYMU10004... 40 6.5
36gb|AC116664.1| Papio hamadryas, clone RP41-57E23, complete sequence 40 6.5
37gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, comp... 40 6.5
38gb|AC011336.5| Homo sapiens chromosome 5 clone CTC-250I13, compl... 40 6.5
39gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, c... 40 6.5
40gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, c... 40 6.5
41gb|AC182754.1| Gasterosteus aculeatus clone VMRC28-42C14, comple... 40 6.5
42dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
43dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
44gb|AC109824.4| Homo sapiens BAC clone RP11-737L20 from 2, comple... 40 6.5
45gb|AC008153.5|AC008153 Arabidopsis thaliana chromosome 3 BAC F24... 40 6.5
46gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, co... 40 6.5
47emb|BX511169.2|RN224C24 Rattus norvegicus chromosome 1 BAC RP32-... 40 6.5
48dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
49gb|AF212832.5| Homo sapiens chromosome 8 clone CTC-806C5 map 8q2... 40 6.5
50dbj|AK107932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
51gb|AF198355.1|AF198355 Odocoileus adenovirus protein IIIa gene, ... 40 6.5
52gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 6.5
53dbj|AK067174.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
54gb|BC048769.1| Homo sapiens transcription factor 7 (T-cell speci... 40 6.5
55gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
56emb|Z47361.1|HSTCF1D H.sapiens TCF-1 mRNA for T cell factor 1 sp... 40 6.5
57emb|AL832816.1|HSM804127 Homo sapiens mRNA; cDNA DKFZp667B0424 (... 40 6.5
58emb|AL834166.1|HSM805427 Homo sapiens mRNA; cDNA DKFZp667C032 (f... 40 6.5 
>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18,
              complete sequence
          Length = 176615

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Plus

                                                                          
Query: 208    tttcacctctgggctgctttggttgggtcatacgttgcaggataaggagctggcggtgct 267
              |||||||||||| ||||| |||||||||| || |   ||||||||| ||||||   ||||
Sbjct: 100586 tttcacctctggcctgctctggttgggtcgtatgcgacaggataagtagctgg---tgct 100642

                                                                   
Query: 268    tgccccgcattggcagccccgctgcttgcctgaaccggtgcagcaggatatcc 320
              || || ||||||||||| || ||||||| ||||||   | |||||||||||||
Sbjct: 100643 tgtcctgcattggcagctccactgcttgactgaacaactccagcaggatatcc 100695
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Plus

                                                                            
Query: 208      tttcacctctgggctgctttggttgggtcatacgttgcaggataaggagctggcggtgct 267
                |||||||||||| ||||| |||||||||| || |   ||||||||| ||||||   ||||
Sbjct: 23935613 tttcacctctggcctgctctggttgggtcgtatgcgacaggataagtagctgg---tgct 23935669

                                                                     
Query: 268      tgccccgcattggcagccccgctgcttgcctgaaccggtgcagcaggatatcc 320
                || || ||||||||||| || ||||||| ||||||   | |||||||||||||
Sbjct: 23935670 tgtcctgcattggcagctccactgcttgactgaacaactccagcaggatatcc 23935722
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>dbj|AK071348.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092D06, full
            insert sequence
          Length = 1910

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                        
Query: 208  tttcacctctgggctgctttggttgggtcatacgttgcaggataaggagctggcggtgct 267
            |||||||||||| ||||| |||||||||| || |   ||||||||| ||||||   ||||
Sbjct: 1601 tttcacctctggcctgctctggttgggtcgtatgcgacaggataagtagctgg---tgct 1545

                                                                 
Query: 268  tgccccgcattggcagccccgctgcttgcctgaaccggtgcagcaggatatcc 320
            || || ||||||||||| || ||||||| ||||||   | |||||||||||||
Sbjct: 1544 tgtcctgcattggcagctccactgcttgactgaacaactccagcaggatatcc 1492
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>ref|XM_472892.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1221

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 91/111 (81%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                        
Query: 210  tcacctctgggctgctttggttgggtcatacgttgcaggataaggagctggcggtgcttg 269
            |||||||||| ||||| |||||||||| || |   ||||||||| ||||||   ||||||
Sbjct: 1221 tcacctctggcctgctctggttgggtcgtatgcgacaggataagtagctgg---tgcttg 1165

                                                               
Query: 270  ccccgcattggcagccccgctgcttgcctgaaccggtgcagcaggatatcc 320
             || ||||||||||| || ||||||| ||||||   | |||||||||||||
Sbjct: 1164 tcctgcattggcagctccactgcttgactgaacaactccagcaggatatcc 1114
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>gb|AY109042.1| Zea mays PCO063924 mRNA sequence
          Length = 736

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 417 ttgcgcataacctgcaactggatagccagaata 449
           ||||||||| |||||||||||||||||||||||
Sbjct: 259 ttgcgcatagcctgcaactggatagccagaata 227



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 208 tttcacctctgggctgctttggttgggtcata 239
           ||||||||||||||| || ||||| |||||||
Sbjct: 483 tttcacctctgggctcctctggtttggtcata 452
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>dbj|AK104848.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H10, full
            insert sequence
          Length = 1832

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 92/113 (81%), Gaps = 4/113 (3%)
 Strand = Plus / Minus

                                                                        
Query: 208  tttcacctctgggctgctttggttgggtcatacgttgcaggataaggagctggcggtgct 267
            |||||||||||| ||||| |||||||||| || |   ||||||||  ||||   ||||||
Sbjct: 1576 tttcacctctggcctgctctggttgggtcgtatgcgacaggataa-tagct---ggtgct 1521

                                                                 
Query: 268  tgccccgcattggcagccccgctgcttgcctgaaccggtgcagcaggatatcc 320
            || || ||||||||||| || ||||||| ||||||   | |||||||||||||
Sbjct: 1520 tgtcctgcattggcagctccactgcttgactgaacaactccagcaggatatcc 1468
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>emb|AJ421525.2|ZMA421525 Zea mays mRNA for transglutaminase (tgz15 gene)
          Length = 1748

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 417  ttgcgcataacctgcaactggatagccaga 446
            |||||| || ||||||||||||||||||||
Sbjct: 1307 ttgcgcgtagcctgcaactggatagccaga 1278
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>emb|AJ488103.1|ZMA488103 Zea mays mRNA for transglutaminase (tgz21 gene)
          Length = 1910

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 417  ttgcgcataacctgcaactggatagccaga 446
            |||||| || ||||||||||||||||||||
Sbjct: 1469 ttgcgcgtagcctgcaactggatagccaga 1440
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>gb|AC107756.9| Mus musculus chromosome 18, clone RP23-214K19, complete sequence
          Length = 216911

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   aatttttggataaaattttgc 170
             |||||||||||||||||||||
Sbjct: 39305 aatttttggataaaattttgc 39285
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>ref|XM_482099.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 653

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 144 catgagaatttttggataaaattt 167
           |||| |||||||||||||||||||
Sbjct: 504 catgggaatttttggataaaattt 527
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>ref|XM_507211.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0011E04.105
            mRNA
          Length = 2609

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  catgagaatttttggataaaattt 167
            |||| |||||||||||||||||||
Sbjct: 1867 catgggaatttttggataaaattt 1844
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>ref|NM_194782.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNAa0087H07.6), mRNA
          Length = 2187

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   caaccatccagcaaaacaag 35
            ||||||||||||||||||||
Sbjct: 1663 caaccatccagcaaaacaag 1682
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>ref|XM_517932.1| PREDICTED: Pan troglodytes similar to T-cell-specific transcription
            factor 1 splice form E - human (LOC462062), mRNA
          Length = 2703

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 122  tgtacatgaaggaaatgagagcca 145
            ||||||||||||| ||||||||||
Sbjct: 1880 tgtacatgaaggagatgagagcca 1903
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>gb|BC072023.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box),
           transcript variant 1, mRNA (cDNA clone MGC:88737
           IMAGE:6292932), complete cds
          Length = 2974

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 964 tgtacatgaaggagatgagagcca 987
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>gb|AC109605.14| Mus musculus strain 129S6/SvEvTac clone rp22-470o15 map 11, complete
              sequence
          Length = 170397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 131    aggaaatgagagccatgagaattt 154
              |||||||||| |||||||||||||
Sbjct: 124437 aggaaatgagggccatgagaattt 124460



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 131   aggaaatgagagccatgagaattt 154
             |||||||||| |||||||||||||
Sbjct: 54747 aggaaatgagggccatgagaattt 54724
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>gb|AC146777.27| Medicago truncatula clone mth2-173c10, complete sequence
          Length = 121026

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   atttttggataaaattttgc 170
             ||||||||||||||||||||
Sbjct: 27749 atttttggataaaattttgc 27730
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>emb|AL589655.5| Human DNA sequence from clone RP11-420A21 on chromosome 6 Contains a
             pseudogene similar to an integrin Alpha-E precursor
             fragment and part of the TEX27 gene for testis expressed
             sequence 27 (FLJ13222), complete sequence
          Length = 160789

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   atttttggataaaattttgc 170
             ||||||||||||||||||||
Sbjct: 44552 atttttggataaaattttgc 44571
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>emb|AL365402.17| Human DNA sequence from clone RP11-445K1 on chromosome 1q31.1-31.3
              Contains the 3' end of the gene for DBCCR1-like (DBCCR1L),
              complete sequence
          Length = 190163

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     acaagagatacaaatcaatt 50
              ||||||||||||||||||||
Sbjct: 124675 acaagagatacaaatcaatt 124656
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 16      caaccatccagcaaaacaag 35
               ||||||||||||||||||||
Sbjct: 2329937 caaccatccagcaaaacaag 2329918
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>emb|Z47362.1|HSTCF1E H.sapiens TCF-1 mRNA for T cell factor 1 splice form E
          Length = 1165

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 489 tgtacatgaaggagatgagagcca 512
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>emb|X63901.1|HSTCF1G Homo sapiens TCF-1 gene
          Length = 2855

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 122  tgtacatgaaggaaatgagagcca 145
            ||||||||||||| ||||||||||
Sbjct: 1496 tgtacatgaaggagatgagagcca 1519
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>emb|X59871.1|HSTCF1C Human TCF-1 mRNA for T cell factor 1 (splice form C)
          Length = 2910

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 567 tgtacatgaaggagatgagagcca 590
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>emb|X59870.1|HSTCF1B Human TCF-1 mRNA for T cell factor 1 (splice form B)
          Length = 2814

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 567 tgtacatgaaggagatgagagcca 590
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>emb|X59869.1|HSTCF1A Human TCF-1 mRNA for T cell factor 1 (splice form A)
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 567 tgtacatgaaggagatgagagcca 590
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>emb|AL929355.1|PFA929355 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5
          Length = 330050

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     aaaacaagagatacaaatca 47
              ||||||||||||||||||||
Sbjct: 284289 aaaacaagagatacaaatca 284308
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>emb|AL645802.11| Mouse DNA sequence from clone RP23-128D9 on chromosome 11 Contains the
              gene for olfactory receptor MOR275-2,  an olfactory
              receptor (MOR275-3) pseudogene, the gene for olfactory
              receptor MOR275-5, a novel gene (2210407C18Rik), the gene
              olfactory receptor MOR107-1, a novel gene (LOC216781), a
              novel olfactory receptor protein, a novel gene similar to
              olfactory receptor MOR285-1 (LOC216783),  a novel gene
              similar to olfactory receptor MOR285-2 (LOC216784), a novel
              gene similar to olfactory receptor MOR285-1  (LOC194664),
              the gene for olfactory receptor MOR256-47 and a novel gene
              similar to olfactory receptor MOR285-1 (LOC193147),
              complete sequence
          Length = 226520

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 131    aggaaatgagagccatgagaattt 154
              |||||||||| |||||||||||||
Sbjct: 192717 aggaaatgagggccatgagaattt 192740
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>ref|NM_213648.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box)
           (TCF7), transcript variant 5, mRNA
          Length = 2944

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 690 tgtacatgaaggagatgagagcca 713
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>ref|NM_201634.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box)
           (TCF7), transcript variant 4, mRNA
          Length = 2917

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 567 tgtacatgaaggagatgagagcca 590
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>ref|NM_003202.2| Homo sapiens transcription factor 7 (T-cell specific, HMG-box)
            (TCF7), transcript variant 1, mRNA
          Length = 3283

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 122  tgtacatgaaggaaatgagagcca 145
            ||||||||||||| ||||||||||
Sbjct: 1029 tgtacatgaaggagatgagagcca 1052
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>ref|NM_201633.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box)
           (TCF7), transcript variant 3, mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 567 tgtacatgaaggagatgagagcca 590
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>ref|NM_201632.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box)
           (TCF7), transcript variant 2, mRNA
          Length = 2821

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 567 tgtacatgaaggagatgagagcca 590
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>dbj|AK131428.1| Homo sapiens cDNA FLJ16553 fis, clone SPLEN2004611
          Length = 3366

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 552 tgtacatgaaggagatgagagcca 575
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>dbj|AK093683.1| Homo sapiens cDNA FLJ36364 fis, clone THYMU2007725, highly similar
           to T-CELL-SPECIFIC TRANSCRIPTION FACTOR 1
          Length = 1965

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 919 tgtacatgaaggagatgagagcca 942
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>dbj|AK093530.1| Homo sapiens cDNA FLJ36211 fis, clone THYMU2000300, highly similar
           to T-cell-specific transcription factor 1 splice form B
          Length = 2682

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 690 tgtacatgaaggagatgagagcca 713
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>dbj|AK057580.1| Homo sapiens cDNA FLJ33018 fis, clone THYMU1000459, highly similar
           to T-CELL-SPECIFIC TRANSCRIPTION FACTOR 1
          Length = 2813

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 820 tgtacatgaaggagatgagagcca 843
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>gb|AC116664.1| Papio hamadryas, clone RP41-57E23, complete sequence
          Length = 175388

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 371    tggctactgggtgctgaggtgcag 394
              |||||||||||| |||||||||||
Sbjct: 102797 tggctactgggtcctgaggtgcag 102820
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>gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, complete sequence
          Length = 189207

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    gaaatgagagccatgagaat 152
              ||||||||||||||||||||
Sbjct: 110247 gaaatgagagccatgagaat 110228
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>gb|AC011336.5| Homo sapiens chromosome 5 clone CTC-250I13, complete sequence
          Length = 31598

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 122   tgtacatgaaggaaatgagagcca 145
             ||||||||||||| ||||||||||
Sbjct: 13135 tgtacatgaaggagatgagagcca 13158
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>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence
          Length = 156654

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     caaccatccagcaaaacaag 35
              ||||||||||||||||||||
Sbjct: 155591 caaccatccagcaaaacaag 155572
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>gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, complete sequence
          Length = 132268

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    caaccatccagcaaaacaag 35
             ||||||||||||||||||||
Sbjct: 58937 caaccatccagcaaaacaag 58918
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>gb|AC182754.1| Gasterosteus aculeatus clone VMRC28-42C14, complete sequence
          Length = 138028

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 122   tgtacatgaaggaaatgagagcca 145
             ||||||||||||| ||||||||||
Sbjct: 55774 tgtacatgaaggagatgagagcca 55797
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 16      caaccatccagcaaaacaag 35
               ||||||||||||||||||||
Sbjct: 2329937 caaccatccagcaaaacaag 2329918
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 144      catgagaatttttggataaaattt 167
                |||| |||||||||||||||||||
Sbjct: 17760663 catgggaatttttggataaaattt 17760640
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>gb|AC109824.4| Homo sapiens BAC clone RP11-737L20 from 2, complete sequence
          Length = 93978

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gaatttttggataaaatttt 168
             ||||||||||||||||||||
Sbjct: 51475 gaatttttggataaaatttt 51494
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>gb|AC008153.5|AC008153 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete
             sequence
          Length = 117296

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gaatttttggataaaatttt 168
             ||||||||||||||||||||
Sbjct: 29830 gaatttttggataaaatttt 29849
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>gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, complete sequence
          Length = 184147

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 146   tgagaatttttggataaaattttg 169
             |||||| |||||||||||||||||
Sbjct: 60987 tgagaacttttggataaaattttg 61010
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>emb|BX511169.2|RN224C24 Rattus norvegicus chromosome 1 BAC RP32-224C24, complete sequence
          Length = 163386

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   aatttttggataaaattttg 169
             ||||||||||||||||||||
Sbjct: 17615 aatttttggataaaattttg 17596
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>dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0011E04
          Length = 136767

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   catgagaatttttggataaaattt 167
             |||| |||||||||||||||||||
Sbjct: 35057 catgggaatttttggataaaattt 35034
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>gb|AF212832.5| Homo sapiens chromosome 8 clone CTC-806C5 map 8q24.3, complete sequence
          Length = 122029

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   gaaatgagagccatgagaat 152
             ||||||||||||||||||||
Sbjct: 24661 gaaatgagagccatgagaat 24680
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>dbj|AK107932.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A03, full
           insert sequence
          Length = 653

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 144 catgagaatttttggataaaattt 167
           |||| |||||||||||||||||||
Sbjct: 504 catgggaatttttggataaaattt 527
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>gb|AF198355.1|AF198355 Odocoileus adenovirus protein IIIa gene, partial cds
          Length = 1256

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 24   cagcaaaacaagagatacaaatcaattc 51
            |||||||| |||||||||||||||||||
Sbjct: 1114 cagcaaaa-aagagatacaaatcaattc 1140
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     cagtagccgcgccactggct 375
               ||||||||||||||||||||
Sbjct: 1471696 cagtagccgcgccactggct 1471715
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>dbj|AK067174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E16, full
            insert sequence
          Length = 2607

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  catgagaatttttggataaaattt 167
            |||| |||||||||||||||||||
Sbjct: 1865 catgggaatttttggataaaattt 1842
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>gb|BC048769.1| Homo sapiens transcription factor 7 (T-cell specific, HMG-box),
            transcript variant 1, mRNA (cDNA clone MGC:47735
            IMAGE:6063270), complete cds
          Length = 3047

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 122  tgtacatgaaggaaatgagagcca 145
            ||||||||||||| ||||||||||
Sbjct: 1029 tgtacatgaaggagatgagagcca 1052
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 16      caaccatccagcaaaacaag 35
               ||||||||||||||||||||
Sbjct: 2329888 caaccatccagcaaaacaag 2329869
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>emb|Z47361.1|HSTCF1D H.sapiens TCF-1 mRNA for T cell factor 1 splice form D
          Length = 1115

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 489 tgtacatgaaggagatgagagcca 512
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>emb|AL832816.1|HSM804127 Homo sapiens mRNA; cDNA DKFZp667B0424 (from clone DKFZp667B0424)
          Length = 2760

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 745 tgtacatgaaggagatgagagcca 768
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>emb|AL834166.1|HSM805427 Homo sapiens mRNA; cDNA DKFZp667C032 (from clone DKFZp667C032)
          Length = 5340

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 122 tgtacatgaaggaaatgagagcca 145
           ||||||||||||| ||||||||||
Sbjct: 646 tgtacatgaaggagatgagagcca 669


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,568,897
Number of Sequences: 3902068
Number of extensions: 3568897
Number of successful extensions: 70404
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70244
Number of HSP's gapped (non-prelim): 157
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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