ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 145 1e-31
2gb|DQ175800.1| Hordeum vulgare clone DsA18 Ds insertion site fla... 145 1e-31
3emb|AJ865018.1| Hordeum vulgare subsp. vulgare transposon MITE A... 117 3e-23
4emb|AJ865016.1| Hordeum vulgare subsp. vulgare transposon MITE A... 111 2e-21
5emb|AJ865020.1| Hordeum vulgare subsp. vulgare transposon MITE A... 74 4e-10
6emb|AJ865019.1| Hordeum vulgare subsp. vulgare transposon MITE A... 74 4e-10
7emb|AJ865017.1| Hordeum vulgare subsp. vulgare transposon MITE A... 70 7e-09
8emb|AJ865021.1| Hordeum vulgare subsp. vulgare transposon MITE A... 68 3e-08
9emb|AJ234611.1|HVU234611 Hordeum vulgare genomic DNA fragment; c... 50 0.006
10emb|AJ865022.1| Hordeum vulgare subsp. vulgare transposon MITE A... 48 0.025
11emb|AJ865024.1| Hordeum vulgare subsp. vulgare transposon MITE A... 46 0.098
12emb|AJ865023.1| Hordeum vulgare subsp. vulgare transposon MITE A... 46 0.098
13gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex sub... 46 0.098
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.098
15dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.098
16dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.098
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
18dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
19gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1)... 44 0.39
20gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 42 1.5
21emb|AJ865073.1| Hordeum vulgare subsp. vulgare transposon MITE A... 42 1.5
22emb|AJ865072.1| Hordeum vulgare subsp. vulgare transposon MITE A... 42 1.5
23dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 42 1.5
24ref|NM_181902.1| Caenorhabditis elegans T04A8.7b (T04A8.7) mRNA,... 42 1.5
25ref|NM_065560.3| Caenorhabditis elegans T04A8.7a (T04A8.7) mRNA,... 42 1.5
26gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.5
27dbj|AP005571.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
28dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
29emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.5
30gb|AC158911.7| Mus musculus chromosome 5, clone RP24-363D4, comp... 42 1.5
31emb|Z35663.1|CET04A8 Caenorhabditis elegans Cosmid T04A8, comple... 42 1.5
32gb|AC139128.6| Mus musculus chromosome 3, clone RP23-100B7, comp... 40 6.0
33ref|XM_469938.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
34ref|NM_194783.1| Oryza sativa (japonica cultivar-group) putative... 40 6.0
35gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.0
36gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 40 6.0
37gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.0
38ref|NM_080708.1| Mus musculus BMP2 inducible kinase (Bmp2k), mRNA 40 6.0
39gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.0
40emb|AL713969.11| Human DNA sequence from clone RP11-501I17 on ch... 40 6.0
41emb|AL662864.14| Human DNA sequence from clone RP11-493K23 on ch... 40 6.0
42emb|AL358593.22| Human DNA sequence from clone RP11-473A10 on ch... 40 6.0
43emb|AL117345.21|HSJ416F21 Human DNA sequence from clone RP3-416F... 40 6.0
44gb|AC158581.2| Mus musculus chromosome 3, clone RP24-264G1, comp... 40 6.0
45gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 6.0
46emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.0
47emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 40 6.0
48emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
49emb|BX538146.1|HSM806347 Homo sapiens genomic DNA; cDNA DKFZp686... 40 6.0
50emb|AL805943.6| Mouse DNA sequence from clone RP23-86O13 on chro... 40 6.0
51emb|AJ865026.1| Hordeum vulgare subsp. vulgare transposon MITE A... 40 6.0
52gb|AC166002.3| Nomascus leucogenys leucogenys clone CH271-400K18... 40 6.0
53gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 6.0
54gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, c... 40 6.0
55gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, c... 40 6.0
56gb|AE009831.1|AE009831 Pyrobaculum aerophilum strain IM2 section... 40 6.0
57gb|AY050249.1| Mus musculus BMP-2 inducible kinase mRNA, complet... 40 6.0
58dbj|AK046752.1| Mus musculus 4 days neonate thymus cDNA, RIKEN f... 40 6.0
59gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.0
60gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.0
61dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
62dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
63dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
64ref|XM_577422.1| PREDICTED: Rattus norvegicus similar to RIKEN c... 40 6.0
65dbj|AK121557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
66dbj|AK103597.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
67gb|AC121887.4| Mus musculus BAC clone RP24-142B15 from 5, comple... 40 6.0
68emb|BX088726.13| Zebrafish DNA sequence from clone DKEY-149G13 i... 40 6.0
69gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.0
70gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
71emb|AL135750.5|HSO20 Homo sapiens chromosome X sequence from BAC... 40 6.0
72gb|AY391335.1| Equus caballus clone UMNe314 microsatellite sequence 40 6.0
73gb|AC102278.10| Mus musculus chromosome 3, clone RP24-298A6, com... 40 6.0 
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
           locus region
          Length = 160897

 Score =  145 bits (73), Expect = 1e-31
 Identities = 121/136 (88%), Gaps = 2/136 (1%)
 Strand = Plus / Minus

                                                                       
Query: 106 aggccttgttcggttgcaacggatttgaaggggattgaagtgaattggggaggattaaat 165
           |||| ||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct: 859 aggctttgttcgcttgcaacggatttaaaggggattggagtggattggggaggattaaat 800

                                                                       
Query: 166 ttcctgtaagtcaaaatccacctcaatcctcttcaatcatcttcaat--ccttgtggtgg 223
             ||||||||||||||||||| ||||||| || ||||| ||| ||||  |||||||||||
Sbjct: 799 cccctgtaagtcaaaatccacttcaatcccctccaatcctctccaatccccttgtggtgg 740

                           
Query: 224 ggattaacggaacaag 239
           |||||||| |||||||
Sbjct: 739 ggattaaccgaacaag 724
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>gb|DQ175800.1| Hordeum vulgare clone DsA18 Ds insertion site flanking region
           genomic sequence
          Length = 540

 Score =  145 bits (73), Expect = 1e-31
 Identities = 121/136 (88%), Gaps = 2/136 (1%)
 Strand = Plus / Minus

                                                                       
Query: 106 aggccttgttcggttgcaacggatttgaaggggattgaagtgaattggggaggattaaat 165
           |||| ||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct: 199 aggctttgttcgcttgcaacggatttaaaggggattggagtggattggggaggattaaat 140

                                                                       
Query: 166 ttcctgtaagtcaaaatccacctcaatcctcttcaatcatcttcaat--ccttgtggtgg 223
             ||||||||||||||||||| ||||||| || ||||| ||| ||||  |||||||||||
Sbjct: 139 cccctgtaagtcaaaatccacttcaatcccctccaatcctctccaatccccttgtggtgg 80

                           
Query: 224 ggattaacggaacaag 239
           |||||||| |||||||
Sbjct: 79  ggattaaccgaacaag 64
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>emb|AJ865018.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7A11
          Length = 144

 Score =  117 bits (59), Expect = 3e-23
 Identities = 119/138 (86%), Gaps = 2/138 (1%)
 Strand = Plus / Plus

                                                                       
Query: 104 tcaggccttgttcggttgcaacggatttgaaggggattgaagtgaattggggaggattaa 163
           |||||||||||| ||||||||| |||||||||||||||||| |  |||||| ||||||||
Sbjct: 1   tcaggccttgttgggttgcaacagatttgaaggggattgaaatagattgggaaggattaa 60

                                                                       
Query: 164 atttcctgtaagtcaaaatccacctcaatcctcttcaatcatcttcaatc--cttgtggt 221
           ||  | ||||||||||| || |||||||||| || ||||| | | |||||  ||||||||
Sbjct: 61  atcccgtgtaagtcaaattcgacctcaatcccctccaatcctttccaatcctcttgtggt 120

                             
Query: 222 ggggattaacggaacaag 239
           |||||||||| |||||||
Sbjct: 121 ggggattaaccgaacaag 138
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>emb|AJ865016.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7F04
          Length = 144

 Score =  111 bits (56), Expect = 2e-21
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                       
Query: 106 aggccttgttcggttgcaacggatttgaaggggattgaagtgaattggggaggattaaat 165
           |||||||||||||||||||| |||||||||||||||| | || |||||||||||||||||
Sbjct: 3   aggccttgttcggttgcaacagatttgaaggggattggaatggattggggaggattaaat 62

                                       
Query: 166 ttcctgtaagtcaaaatccacctcaatc 193
             ||||||||||||| || |||||||||
Sbjct: 63  cccctgtaagtcaaattcgacctcaatc 90
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>emb|AJ865020.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7D05
          Length = 144

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 112/136 (82%), Gaps = 2/136 (1%)
 Strand = Plus / Plus

                                                                       
Query: 106 aggccttgttcggttgcaacggatttgaaggggattgaagtgaattggggaggattaaat 165
           |||||||||| ||||||||| ||||| || ||||||| ||||  ||| | ||||||||||
Sbjct: 3   aggccttgttgggttgcaacagatttaaaagggattgtagtgggttgagaaggattaaat 62

                                                                       
Query: 166 ttcctgtaagtcaaaatccacctcaatcctcttcaatcatcttcaatccttgt--ggtgg 223
             | ||||||| ||| |||||||||| || || ||||| |||| ||||||| |  | |||
Sbjct: 63  cccttgtaagtgaaattccacctcaagccgctccaatcctctttaatccttttatgatgg 122

                           
Query: 224 ggattaacggaacaag 239
           |||||||| |||||||
Sbjct: 123 ggattaaccgaacaag 138
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>emb|AJ865019.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7D01
          Length = 144

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                       
Query: 110 cttgttcggttgcaacggatttgaaggggattgaagtgaattggggaggattaaatttcc 169
           |||||| ||||||||| ||||||||||  |||| | || |||||| |||||||||||   
Sbjct: 7   cttgttgggttgcaacagatttgaaggaaattggaatggattgggaaggattaaattctg 66

                                    
Query: 170 tgtaagtcaaaatccacctcaatcc 194
           ||||||||||| |||||||||||||
Sbjct: 67  tgtaagtcaaattccacctcaatcc 91
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>emb|AJ865017.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7E08
          Length = 114

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 157 ggattaaatttcctgtaagtcaaaatccacctcaatcctcttcaatc 203
           |||||||||  |||||||||||||||||||||||||||||| |||||
Sbjct: 34  ggattaaatcccctgtaagtcaaaatccacctcaatcctctccaatc 80



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 110 cttgttcggttgcaacggatttgaaggggatt 141
           ||||||||||||||||||||||||||||||||
Sbjct: 7   cttgttcggttgcaacggatttgaaggggatt 38
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>emb|AJ865021.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7E07
          Length = 144

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 106 aggccttgttcggttgcaacggatttgaaggggattgaagtgaattggggaggattaaat 165
           |||||||||| |||||||| || |||||||||||||| |||| ||||  |||||||||||
Sbjct: 3   aggccttgttgggttgcaagggctttgaaggggattgcagtggattgcagaggattaaat 62

                                                             
Query: 166 ttcctgtaagtcaaaatccacctcaatcctcttcaatcatcttcaatcct 215
             ||   || ||||| ||| ||||||||| || ||| | |||||||||||
Sbjct: 63  cccccacaaatcaaattcctcctcaatcccctccaaacctcttcaatcct 112
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>emb|AJ234611.1|HVU234611 Hordeum vulgare genomic DNA fragment; clone MWG0878.rev
          Length = 517

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 110 cttgttcggttgcaacggatttgaaggggattgaagtgaattggggaggattaaatt 166
           |||||| |||||||| || ||||||| || ||| |||| ||||| ||||||||||||
Sbjct: 381 cttgttgggttgcaaggggtttgaagagggttggagtggattggagaggattaaatt 325
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>emb|AJ865022.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7F09
          Length = 142

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 110 cttgttcggttgcaacggatttgaaggggattgaagtgaattggggaggattaaat 165
           |||||| |||||||| || |||||||| ||||| |||  ||||| |||||||||||
Sbjct: 7   cttgttgggttgcaaggggtttgaaggagattggagtagattggagaggattaaat 62
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>emb|AJ865024.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7B12
          Length = 145

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 170 tgtaagtcaaaatccacctcaatcctcttcaatcatcttcaatcctt 216
           ||||| ||||||| |  |||||||||| |||||| ||||||||||||
Sbjct: 68  tgtaaatcaaaatacgtctcaatcctcgtcaatcctcttcaatcctt 114
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>emb|AJ865023.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7A08
          Length = 145

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 170 tgtaagtcaaaatccacctcaatcctcttcaatcatcttcaatcctt 216
           ||||| ||||||| |  |||||||||| |||||| ||||||||||||
Sbjct: 68  tgtaaatcaaaatacgtctcaatcctcgtcaatcctcttcaatcctt 114
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>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098 cyclic
            nucleotide-gated ion channel 4 (Nec1) gene, complete cds
          Length = 9090

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 184  cacctcaatcctcttcaatcatcttcaatcc 214
            ||||||||||| |||||||| ||||||||||
Sbjct: 3750 cacctcaatccccttcaatcctcttcaatcc 3780
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 98      gatccgtcaggccttgttcggtt 120
               |||||||||||||||||||||||
Sbjct: 4858523 gatccgtcaggccttgttcggtt 4858501
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>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1073_F05
          Length = 124252

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 98     gatccgtcaggccttgttcggtt 120
              |||||||||||||||||||||||
Sbjct: 100682 gatccgtcaggccttgttcggtt 100660
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>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1145_F01
          Length = 113755

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 98   gatccgtcaggccttgttcggtt 120
            |||||||||||||||||||||||
Sbjct: 3262 gatccgtcaggccttgttcggtt 3240
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 186      cctcaatcctcttcaatcatcttcaa 211
                ||||||||| ||||||||||||||||
Sbjct: 20414203 cctcaatccccttcaatcatcttcaa 20414228



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 186     cctcaatcctcttcaatcatcttcaatcc 214
               |||||||||||| ||||| ||||||||||
Sbjct: 3518019 cctcaatcctctccaatcctcttcaatcc 3517991
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>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1531_B07
          Length = 115245

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 186   cctcaatcctcttcaatcatcttcaa 211
             ||||||||| ||||||||||||||||
Sbjct: 42342 cctcaatccccttcaatcatcttcaa 42367
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>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5),
             epsilon-COP (Z438D03.6), putative kinase (Z438D03.7),
             unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes,
             complete cds
          Length = 185988

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                         
Query: 134   aggggattgaagtgaattggggaggattaaatttcctgtaagtcaaaatccacctcaatc 193
             ||||||||| || | |||| || ||||| |||| |||  |||||||||||| |||||  |
Sbjct: 32997 aggggattggagggcattgaggtggattcaattccctacaagtcaaaatcctcctcagcc 32938

                                   
Query: 194   ctcttcaatcatcttcaatcct 215
             | |||||||| ||| |||||||
Sbjct: 32937 cccttcaatcctctccaatcct 32916
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 295     gccggcgacgatgccggccgagctc 319
               |||||||||||||| ||||||||||
Sbjct: 2851388 gccggcgacgatgctggccgagctc 2851364
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>emb|AJ865073.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7A05
          Length = 258

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 69/85 (81%)
 Strand = Plus / Plus

                                                                       
Query: 130 ttgaaggggattgaagtgaattggggaggattaaatttcctgtaagtcaaaatccacctc 189
           ||||||||| ||| || | ||||||  |||||||||  |||  |||| ||| | ||||||
Sbjct: 141 ttgaaggggtttggaggggattgggagggattaaatcccctacaagttaaatttcacctc 200

                                    
Query: 190 aatcctcttcaatcatcttcaatcc 214
           ||||| || ||||| ||||||||||
Sbjct: 201 aatcccctccaatcctcttcaatcc 225
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>emb|AJ865072.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004T7B08
          Length = 258

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 69/85 (81%)
 Strand = Plus / Plus

                                                                       
Query: 130 ttgaaggggattgaagtgaattggggaggattaaatttcctgtaagtcaaaatccacctc 189
           ||||||||| ||| || | ||||||  |||||||||  |||  |||| ||| | ||||||
Sbjct: 141 ttgaaggggtttggaggggattgggagggattaaatcccctacaagttaaatttcacctc 200

                                    
Query: 190 aatcctcttcaatcatcttcaatcc 214
           ||||| || ||||| ||||||||||
Sbjct: 201 aatcccctccaatcctcttcaatcc 225
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 69      caacaaacggaagaagaagag 89
               |||||||||||||||||||||
Sbjct: 1714931 caacaaacggaagaagaagag 1714911
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>ref|NM_181902.1| Caenorhabditis elegans T04A8.7b (T04A8.7) mRNA, complete cds
          Length = 1821

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 242 atcagtgggatggatcacatggcgg 266
           ||||||||||||||||| |||||||
Sbjct: 620 atcagtgggatggatcaaatggcgg 644
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>ref|NM_065560.3| Caenorhabditis elegans T04A8.7a (T04A8.7) mRNA, complete cds
          Length = 2305

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 242 atcagtgggatggatcacatggcgg 266
           ||||||||||||||||| |||||||
Sbjct: 855 atcagtgggatggatcaaatggcgg 879
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 294     agccggcgacgatgccggccg 314
               |||||||||||||||||||||
Sbjct: 1838127 agccggcgacgatgccggccg 1838107
to top
>dbj|AP005571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1451_A02
          Length = 135861

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 186   cctcaatcctcttcaatcatcttcaatcc 214
             |||||||||||| ||||| ||||||||||
Sbjct: 70907 cctcaatcctctccaatcctcttcaatcc 70879
to top
>dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0499G10
          Length = 158375

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 186  cctcaatcctcttcaatcatcttcaatcc 214
            |||||||||||| ||||| ||||||||||
Sbjct: 3794 cctcaatcctctccaatcctcttcaatcc 3766
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 370     cccagctccggacgacgtcggcgtc 394
               |||||| ||||||||||||||||||
Sbjct: 2394865 cccagcgccggacgacgtcggcgtc 2394889
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>gb|AC158911.7| Mus musculus chromosome 5, clone RP24-363D4, complete sequence
          Length = 119381

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    aagtagataagctcatgcatg 60
             |||||||||||||||||||||
Sbjct: 31809 aagtagataagctcatgcatg 31829
to top
>emb|Z35663.1|CET04A8 Caenorhabditis elegans Cosmid T04A8, complete sequence
          Length = 39482

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 242   atcagtgggatggatcacatggcgg 266
             ||||||||||||||||| |||||||
Sbjct: 18863 atcagtgggatggatcaaatggcgg 18887
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>gb|AC139128.6| Mus musculus chromosome 3, clone RP23-100B7, complete sequence
          Length = 239600

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   aacaagacatcagtgggatg 253
             ||||||||||||||||||||
Sbjct: 42655 aacaagacatcagtgggatg 42674
to top
>ref|XM_469938.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 480

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 295 gccggcgacgatgccggccg 314
           ||||||||||||||||||||
Sbjct: 340 gccggcgacgatgccggccg 359
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>ref|NM_194783.1| Oryza sativa (japonica cultivar-group) putative aldehyde oxidase
            (OSJNAa0087H07.7), mRNA
          Length = 4077

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  gccggcgacgatgccggccg 314
            ||||||||||||||||||||
Sbjct: 3990 gccggcgacgatgccggccg 4009
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 290     acggagccggcgacgatgccggcc 313
               |||||| |||||||||||||||||
Sbjct: 1773820 acggaggcggcgacgatgccggcc 1773843
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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
              sequence
          Length = 162497

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    gccggcgacgatgccggccg 314
              ||||||||||||||||||||
Sbjct: 149862 gccggcgacgatgccggccg 149881
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 295     gccggcgacgatgccggccg 314
               ||||||||||||||||||||
Sbjct: 1193709 gccggcgacgatgccggccg 1193690
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>ref|NM_080708.1| Mus musculus BMP2 inducible kinase (Bmp2k), mRNA
          Length = 6585

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 396 gtcccgccggcgcgctggag 415
           ||||||||||||||||||||
Sbjct: 238 gtcccgccggcgcgctggag 219
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 295      gccggcgacgatgccggccg 314
                ||||||||||||||||||||
Sbjct: 32594045 gccggcgacgatgccggccg 32594026
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>emb|AL713969.11| Human DNA sequence from clone RP11-501I17 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 84574

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     ataaaatgtttattcaaaag 26
             ||||||||||||||||||||
Sbjct: 40898 ataaaatgtttattcaaaag 40917
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>emb|AL662864.14| Human DNA sequence from clone RP11-493K23 on chromosome X Contains two
              novel genes, two novel genes similar to poly(A) binding
              protein cytoplasmic 1 (LOC340530, LOC340529) and two CpG
              islands, complete sequence
          Length = 120769

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      taaaatgtttattcaaaagg 27
              ||||||||||||||||||||
Sbjct: 109267 taaaatgtttattcaaaagg 109248
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>emb|AL358593.22| Human DNA sequence from clone RP11-473A10 on chromosome 1 Contains the
             3' end of the gene for a novel protein (KIAA1626,
             FLJ34701, FLJ44929, FLJ10521) and the 5' end of a novel
             gene, complete sequence
          Length = 142454

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   gccagggcatagacggcggc 285
             ||||||||||||||||||||
Sbjct: 62401 gccagggcatagacggcggc 62420
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>emb|AL117345.21|HSJ416F21 Human DNA sequence from clone RP3-416F21 on chromosome 6q26-27 Contains
             the 3' end of the PDE10A gene for phosphodiesterase 10A
             and the 5' end of a novel gene, complete sequence
          Length = 143072

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     caataaaatgtttattcaaa 24
             ||||||||||||||||||||
Sbjct: 58019 caataaaatgtttattcaaa 58000
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>gb|AC158581.2| Mus musculus chromosome 3, clone RP24-264G1, complete sequence
          Length = 166808

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   aacaagacatcagtgggatg 253
             ||||||||||||||||||||
Sbjct: 14495 aacaagacatcagtgggatg 14476
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     gagccggcgacgatgccggc 312
               ||||||||||||||||||||
Sbjct: 3031053 gagccggcgacgatgccggc 3031034
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 295     gccggcgacgatgccggccg 314
               ||||||||||||||||||||
Sbjct: 2509646 gccggcgacgatgccggccg 2509627
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>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 291   cggagccggcgacgatgccggccgagct 318
             |||||||||| ||| |||||||||||||
Sbjct: 10806 cggagccggccacggtgccggccgagct 10779
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>emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065J03,
             complete sequence
          Length = 144146

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    atccgtcaggccttgttcggttgc 122
             |||| |||||||||||||||||||
Sbjct: 20724 atccctcaggccttgttcggttgc 20701
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>emb|BX538146.1|HSM806347 Homo sapiens genomic DNA; cDNA DKFZp686F20106 (from clone
           DKFZp686F20106)
          Length = 2952

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gccagggcatagacggcggc 285
           ||||||||||||||||||||
Sbjct: 34  gccagggcatagacggcggc 53
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>emb|AL805943.6| Mouse DNA sequence from clone RP23-86O13 on chromosome 4 Contains a opsin
              1 (cone pigments) (Opn1) pseudogene, complete sequence
          Length = 192561

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      ataaaatgtttattcaaaag 26
              ||||||||||||||||||||
Sbjct: 106835 ataaaatgtttattcaaaag 106854
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>emb|AJ865026.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone
           SQ004_T7_D09
          Length = 145

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 179 aaatccacctcaatcctcttcaatcatcttcaatcc 214
           ||||||||||||| || |||||||| |||| |||||
Sbjct: 59  aaatccacctcaaaccccttcaatcctcttgaatcc 24
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>gb|AC166002.3| Nomascus leucogenys leucogenys clone CH271-400K18, complete sequence
          Length = 195728

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   gaaggggattgaagtgaatt 151
             ||||||||||||||||||||
Sbjct: 65343 gaaggggattgaagtgaatt 65324
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 402     ccggcgcgctggagccggacgagggcga 429
               |||||||||||||||||  |||||||||
Sbjct: 1231034 ccggcgcgctggagccgagcgagggcga 1231007
to top
>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence
          Length = 151533

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  gccggcgacgatgccggccg 314
            ||||||||||||||||||||
Sbjct: 3468 gccggcgacgatgccggccg 3487
to top
>gb|AC099733.2| Oryza sativa chromosome 10 clone OSJNAa0087H07, complete sequence
          Length = 132268

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   gccggcgacgatgccggccg 314
             ||||||||||||||||||||
Sbjct: 75736 gccggcgacgatgccggccg 75755
to top
>gb|AE009831.1|AE009831 Pyrobaculum aerophilum strain IM2 section 86 of 201 of the complete
            genome
          Length = 10542

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 424  gggcgacgtggtgggggcggaggc 447
            ||||||||||||| ||||||||||
Sbjct: 5189 gggcgacgtggtgagggcggaggc 5212
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>gb|AY050249.1| Mus musculus BMP-2 inducible kinase mRNA, complete cds
          Length = 6585

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 396 gtcccgccggcgcgctggag 415
           ||||||||||||||||||||
Sbjct: 238 gtcccgccggcgcgctggag 219
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>dbj|AK046752.1| Mus musculus 4 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:B630007K10 product:Bmp2-inducible kinase,
           full insert sequence
          Length = 3209

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 396 gtcccgccggcgcgctggag 415
           ||||||||||||||||||||
Sbjct: 203 gtcccgccggcgcgctggag 184
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    gccggcgacgatgccggccg 314
              ||||||||||||||||||||
Sbjct: 360467 gccggcgacgatgccggccg 360448
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    gccggcgacgatgccggccg 314
              ||||||||||||||||||||
Sbjct: 253286 gccggcgacgatgccggccg 253305
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 99       atccgtcaggccttgttcggttgc 122
                |||| |||||||||||||||||||
Sbjct: 12573501 atccctcaggccttgttcggttgc 12573524
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     gccggcgacgatgccggccg 314
               ||||||||||||||||||||
Sbjct: 2346736 gccggcgacgatgccggccg 2346755
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 295      gccggcgacgatgccggccg 314
                ||||||||||||||||||||
Sbjct: 32684555 gccggcgacgatgccggccg 32684536
to top
>ref|XM_577422.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA A630038E17
            (LOC501995), mRNA
          Length = 1587

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   attcaaaaggcaacaatgaa 37
            ||||||||||||||||||||
Sbjct: 1363 attcaaaaggcaacaatgaa 1382
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>dbj|AK121557.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033J23, full
            insert sequence
          Length = 5069

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  gccggcgacgatgccggccg 314
            ||||||||||||||||||||
Sbjct: 4079 gccggcgacgatgccggccg 4098
to top
>dbj|AK103597.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133E15, full
            insert sequence
          Length = 2514

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  gccggcgacgatgccggccg 314
            ||||||||||||||||||||
Sbjct: 1523 gccggcgacgatgccggccg 1542
to top
>gb|AC121887.4| Mus musculus BAC clone RP24-142B15 from 5, complete sequence
          Length = 234919

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    gtcccgccggcgcgctggag 415
              ||||||||||||||||||||
Sbjct: 181359 gtcccgccggcgcgctggag 181340
to top
>emb|BX088726.13| Zebrafish DNA sequence from clone DKEY-149G13 in linkage group 20,
              complete sequence
          Length = 190374

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      atacaataaaatgtttattcaaaa 25
              ||||||||||||||||||| ||||
Sbjct: 175708 atacaataaaatgtttatttaaaa 175731
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    gccggcgacgatgccggccg 314
              ||||||||||||||||||||
Sbjct: 631181 gccggcgacgatgccggccg 631200
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     gccggcgacgatgccggccg 314
               ||||||||||||||||||||
Sbjct: 2346687 gccggcgacgatgccggccg 2346706
to top
>emb|AL135750.5|HSO20 Homo sapiens chromosome X sequence from BAC CEPHB20O20 region
              PHKA1-DXS227 map Xq13, complete sequence
          Length = 115637

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      taaaatgtttattcaaaagg 27
              ||||||||||||||||||||
Sbjct: 112716 taaaatgtttattcaaaagg 112697
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>gb|AY391335.1| Equus caballus clone UMNe314 microsatellite sequence
          Length = 638

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 ccttgtggtggggattaacg 232
           ||||||||||||||||||||
Sbjct: 479 ccttgtggtggggattaacg 498
to top
>gb|AC102278.10| Mus musculus chromosome 3, clone RP24-298A6, complete sequence
          Length = 184908

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    aacaagacatcagtgggatg 253
              ||||||||||||||||||||
Sbjct: 105068 aacaagacatcagtgggatg 105087


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,422,278
Number of Sequences: 3902068
Number of extensions: 4422278
Number of successful extensions: 88686
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87462
Number of HSP's gapped (non-prelim): 1213
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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