ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart17a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474445.1| Oryza sativa (japonica cultivar-group), predic... 161 2e-36
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
3dbj|AK103558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
4dbj|AK101245.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
5tpe|BN000589.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 161 2e-36
6emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 161 2e-36
7emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 153 6e-34
8emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 153 6e-34
9ref|XM_474454.1| Oryza sativa (japonica cultivar-group), predic... 50 0.006
10gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 50 0.006
11dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
12tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 50 0.006
13ref|NM_187573.1| Oryza sativa (japonica cultivar-group), predic... 44 0.39
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.39
15gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.39
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
17dbj|AK120047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
18dbj|AK064633.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
19tpe|BN000563.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 44 0.39
20gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, par... 42 1.6
21emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase 42 1.6
22ref|XM_474448.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
23ref|XM_469777.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
24gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
25gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome... 40 6.1
26gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genom... 40 6.1
27gb|AC114822.7| Mus musculus BAC clone RP23-113A12 from 2, comple... 40 6.1
28emb|AL512625.10| Human DNA sequence from clone RP11-262H14 on ch... 40 6.1
29gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic ... 40 6.1
30gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 6.1
31emb|CR627148.1| Homo sapiens mRNA; cDNA DKFZp779F2127 (from clon... 40 6.1
32gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence 40 6.1
33gb|AC137066.23| Pan troglodytes clone ptb-31f12, complete sequence 40 6.1
34dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.1
35dbj|AK104928.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
36dbj|AK099287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
37dbj|AK069033.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
38dbj|AK065090.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
39tpe|BN000590.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 6.1
40gb|BC039680.1| Homo sapiens, clone IMAGE:5213378, mRNA 40 6.1
41emb|AL929043.7| Mouse DNA sequence from clone RP23-58H6 on chrom... 40 6.1 
>ref|XM_474445.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1047

 Score =  161 bits (81), Expect = 2e-36
 Identities = 210/253 (83%)
 Strand = Plus / Minus

                                                                       
Query: 183 gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 242
           |||||||||| |||||||| ||||||||||||||||| |||   || |||||||| |  |
Sbjct: 988 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 929

                                                                       
Query: 243 cgagcttggtcatggaggcagcaaactggccgaaaaaccaccagtggttcccggcgaagc 302
           | |||||   |||||||    | ||||||||| | |||||||||||||| ||||||||||
Sbjct: 928 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 869

                                                                       
Query: 303 cgttgaccacccattcggtgcgccagtcggcggtgagcttctggtcggaggtgaacaccc 362
           | |||||||||||   ||||||||||||| ||||||||  ||||||||||||||||||||
Sbjct: 868 cattgaccacccagctggtgcgccagtcgccggtgagcccctggtcggaggtgaacaccc 809

                                                                       
Query: 363 ccttgccctcttgcaggttggtgaagtacttgttgtcaaacacgtccggggtggtcacgt 422
           |||  ||  |   ||||||| || ||||||||||||| ||||||||||||||||| || |
Sbjct: 808 cctgaccggccaccaggttgctgtagtacttgttgtcgaacacgtccggggtggtgacat 749

                        
Query: 423 ccaggtcctgcag 435
           | || ||||||||
Sbjct: 748 caagctcctgcag 736
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  161 bits (81), Expect = 2e-36
 Identities = 210/253 (83%)
 Strand = Plus / Plus

                                                                            
Query: 183      gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 242
                |||||||||| |||||||| ||||||||||||||||| |||   || |||||||| |  |
Sbjct: 35227640 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 35227699

                                                                            
Query: 243      cgagcttggtcatggaggcagcaaactggccgaaaaaccaccagtggttcccggcgaagc 302
                | |||||   |||||||    | ||||||||| | |||||||||||||| ||||||||||
Sbjct: 35227700 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 35227759

                                                                            
Query: 303      cgttgaccacccattcggtgcgccagtcggcggtgagcttctggtcggaggtgaacaccc 362
                | |||||||||||   ||||||||||||| ||||||||  ||||||||||||||||||||
Sbjct: 35227760 cattgaccacccagctggtgcgccagtcgccggtgagcccctggtcggaggtgaacaccc 35227819

                                                                            
Query: 363      ccttgccctcttgcaggttggtgaagtacttgttgtcaaacacgtccggggtggtcacgt 422
                |||  ||  |   ||||||| || ||||||||||||| ||||||||||||||||| || |
Sbjct: 35227820 cctgaccggccaccaggttgctgtagtacttgttgtcgaacacgtccggggtggtgacat 35227879

                             
Query: 423      ccaggtcctgcag 435
                | || ||||||||
Sbjct: 35227880 caagctcctgcag 35227892



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 405      cgtccggggtggtcacgtccaggtcctgcagccggtt 441
                |||| |||||| |||||||||||| ||||||||||||
Sbjct: 35280989 cgtcgggggtgatcacgtccaggttctgcagccggtt 35281025



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 346      gtcggaggtgaacaccccct 365
                ||||||||||||||||||||
Sbjct: 35242684 gtcggaggtgaacaccccct 35242703
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>dbj|AK103558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132H20, full
            insert sequence
          Length = 1413

 Score =  161 bits (81), Expect = 2e-36
 Identities = 210/253 (83%)
 Strand = Plus / Minus

                                                                        
Query: 183  gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 242
            |||||||||| |||||||| ||||||||||||||||| |||   || |||||||| |  |
Sbjct: 1091 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 1032

                                                                        
Query: 243  cgagcttggtcatggaggcagcaaactggccgaaaaaccaccagtggttcccggcgaagc 302
            | |||||   |||||||    | ||||||||| | |||||||||||||| ||||||||||
Sbjct: 1031 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 972

                                                                        
Query: 303  cgttgaccacccattcggtgcgccagtcggcggtgagcttctggtcggaggtgaacaccc 362
            | |||||||||||   ||||||||||||| ||||||||  ||||||||||||||||||||
Sbjct: 971  cattgaccacccagctggtgcgccagtcgccggtgagcccctggtcggaggtgaacaccc 912

                                                                        
Query: 363  ccttgccctcttgcaggttggtgaagtacttgttgtcaaacacgtccggggtggtcacgt 422
            |||  ||  |   ||||||| || ||||||||||||| ||||||||||||||||| || |
Sbjct: 911  cctgaccggccaccaggttgctgtagtacttgttgtcgaacacgtccggggtggtgacat 852

                         
Query: 423  ccaggtcctgcag 435
            | || ||||||||
Sbjct: 851  caagctcctgcag 839
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>dbj|AK101245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032B08, full
            insert sequence
          Length = 3800

 Score =  161 bits (81), Expect = 2e-36
 Identities = 210/253 (83%)
 Strand = Plus / Minus

                                                                        
Query: 183  gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 242
            |||||||||| |||||||| ||||||||||||||||| |||   || |||||||| |  |
Sbjct: 3579 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 3520

                                                                        
Query: 243  cgagcttggtcatggaggcagcaaactggccgaaaaaccaccagtggttcccggcgaagc 302
            | |||||   |||||||    | ||||||||| | |||||||||||||| ||||||||||
Sbjct: 3519 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 3460

                                                                        
Query: 303  cgttgaccacccattcggtgcgccagtcggcggtgagcttctggtcggaggtgaacaccc 362
            | |||||||||||   ||||||||||||| ||||||||  ||||||||||||||||||||
Sbjct: 3459 cattgaccacccagctggtgcgccagtcgccggtgagcccctggtcggaggtgaacaccc 3400

                                                                        
Query: 363  ccttgccctcttgcaggttggtgaagtacttgttgtcaaacacgtccggggtggtcacgt 422
            |||  ||  |   ||||||| || ||||||||||||| ||||||||||||||||| || |
Sbjct: 3399 cctgaccggccaccaggttgctgtagtacttgttgtcgaacacgtccggggtggtgacat 3340

                         
Query: 423  ccaggtcctgcag 435
            | || ||||||||
Sbjct: 3339 caagctcctgcag 3327
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>tpe|BN000589.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx60 gene for
            class III peroxidase 60 precursor, exons 1-3
          Length = 1221

 Score =  161 bits (81), Expect = 2e-36
 Identities = 210/253 (83%)
 Strand = Plus / Minus

                                                                        
Query: 183  gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 242
            |||||||||| |||||||| ||||||||||||||||| |||   || |||||||| |  |
Sbjct: 1162 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 1103

                                                                        
Query: 243  cgagcttggtcatggaggcagcaaactggccgaaaaaccaccagtggttcccggcgaagc 302
            | |||||   |||||||    | ||||||||| | |||||||||||||| ||||||||||
Sbjct: 1102 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 1043

                                                                        
Query: 303  cgttgaccacccattcggtgcgccagtcggcggtgagcttctggtcggaggtgaacaccc 362
            | |||||||||||   ||||||||||||| ||||||||  ||||||||||||||||||||
Sbjct: 1042 cattgaccacccagctggtgcgccagtcgccggtgagcccctggtcggaggtgaacaccc 983

                                                                        
Query: 363  ccttgccctcttgcaggttggtgaagtacttgttgtcaaacacgtccggggtggtcacgt 422
            |||  ||  |   ||||||| || ||||||||||||| ||||||||||||||||| || |
Sbjct: 982  cctgaccggccaccaggttgctgtagtacttgttgtcgaacacgtccggggtggtgacat 923

                         
Query: 423  ccaggtcctgcag 435
            | || ||||||||
Sbjct: 922  caagctcctgcag 910
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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score =  161 bits (81), Expect = 2e-36
 Identities = 210/253 (83%)
 Strand = Plus / Plus

                                                                         
Query: 183   gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 242
             |||||||||| |||||||| ||||||||||||||||| |||   || |||||||| |  |
Sbjct: 23485 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 23544

                                                                         
Query: 243   cgagcttggtcatggaggcagcaaactggccgaaaaaccaccagtggttcccggcgaagc 302
             | |||||   |||||||    | ||||||||| | |||||||||||||| ||||||||||
Sbjct: 23545 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 23604

                                                                         
Query: 303   cgttgaccacccattcggtgcgccagtcggcggtgagcttctggtcggaggtgaacaccc 362
             | |||||||||||   ||||||||||||| ||||||||  ||||||||||||||||||||
Sbjct: 23605 cattgaccacccagctggtgcgccagtcgccggtgagcccctggtcggaggtgaacaccc 23664

                                                                         
Query: 363   ccttgccctcttgcaggttggtgaagtacttgttgtcaaacacgtccggggtggtcacgt 422
             |||  ||  |   ||||||| || ||||||||||||| ||||||||||||||||| || |
Sbjct: 23665 cctgaccggccaccaggttgctgtagtacttgttgtcgaacacgtccggggtggtgacat 23724

                          
Query: 423   ccaggtcctgcag 435
             | || ||||||||
Sbjct: 23725 caagctcctgcag 23737



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 405   cgtccggggtggtcacgtccaggtcctgcagccggtt 441
             |||| |||||| |||||||||||| ||||||||||||
Sbjct: 76834 cgtcgggggtgatcacgtccaggttctgcagccggtt 76870



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   gtcggaggtgaacaccccct 365
             ||||||||||||||||||||
Sbjct: 38529 gtcggaggtgaacaccccct 38548
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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score =  153 bits (77), Expect = 6e-34
 Identities = 209/253 (82%)
 Strand = Plus / Minus

                                                                         
Query: 183   gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 242
             |||||||||| |||||||| ||||||||||||||||| |||   || |||||||| |  |
Sbjct: 85832 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 85773

                                                                         
Query: 243   cgagcttggtcatggaggcagcaaactggccgaaaaaccaccagtggttcccggcgaagc 302
             | |||||   |||||||    | ||||||||| | |||||||||||||| ||||||||||
Sbjct: 85772 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 85713

                                                                         
Query: 303   cgttgaccacccattcggtgcgccagtcggcggtgagcttctggtcggaggtgaacaccc 362
             | |||||||||||   ||||||||||||| ||||||||  ||||||||| ||||||||||
Sbjct: 85712 cattgaccacccagctggtgcgccagtcgccggtgagcccctggtcggaagtgaacaccc 85653

                                                                         
Query: 363   ccttgccctcttgcaggttggtgaagtacttgttgtcaaacacgtccggggtggtcacgt 422
             |||  ||  |   ||||||| || ||||||||||||| ||||||||||||||||| || |
Sbjct: 85652 cctgaccggccaccaggttgctgtagtacttgttgtcgaacacgtccggggtggtgacat 85593

                          
Query: 423   ccaggtcctgcag 435
             | || ||||||||
Sbjct: 85592 cgagctcctgcag 85580



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 405   cgtccggggtggtcacgtccaggtcctgcagccggtt 441
             |||| |||||| |||||||||||| ||||||||||||
Sbjct: 72245 cgtcgggggtgatcacgtccaggttctgcagccggtt 72209



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   gtcggaggtgaacaccccct 365
             ||||||||||||||||||||
Sbjct: 82416 gtcggaggtgaacaccccct 82397



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   gtcggaggtgaacaccccct 365
             ||||||||||||||||||||
Sbjct: 75611 gtcggaggtgaacaccccct 75592
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>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score =  153 bits (77), Expect = 6e-34
 Identities = 209/253 (82%)
 Strand = Plus / Plus

                                                                         
Query: 183   gcacgaagcaactgttgcgacggatctcgccgacgtttccttggggcccctggaggttcc 242
             |||||||||| |||||||| ||||||||||||||||| |||   || |||||||| |  |
Sbjct: 71215 gcacgaagcagctgttgcggcggatctcgccgacgttccctgaaggaccctggagctgtc 71274

                                                                         
Query: 243   cgagcttggtcatggaggcagcaaactggccgaaaaaccaccagtggttcccggcgaagc 302
             | |||||   |||||||    | ||||||||| | |||||||||||||| ||||||||||
Sbjct: 71275 ccagcttcaccatggagctgccgaactggccgtagaaccaccagtggttgccggcgaagc 71334

                                                                         
Query: 303   cgttgaccacccattcggtgcgccagtcggcggtgagcttctggtcggaggtgaacaccc 362
             | |||||||||||   ||||||||||||| ||||||||  ||||||||| ||||||||||
Sbjct: 71335 cattgaccacccagctggtgcgccagtcgccggtgagcccctggtcggaagtgaacaccc 71394

                                                                         
Query: 363   ccttgccctcttgcaggttggtgaagtacttgttgtcaaacacgtccggggtggtcacgt 422
             |||  ||  |   ||||||| || ||||||||||||| ||||||||||||||||| || |
Sbjct: 71395 cctgaccggccaccaggttgctgtagtacttgttgtcgaacacgtccggggtggtgacat 71454

                          
Query: 423   ccaggtcctgcag 435
             | || ||||||||
Sbjct: 71455 cgagctcctgcag 71467



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   gtcggaggtgaacaccccct 365
             ||||||||||||||||||||
Sbjct: 81436 gtcggaggtgaacaccccct 81455



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   gtcggaggtgaacaccccct 365
             ||||||||||||||||||||
Sbjct: 74631 gtcggaggtgaacaccccct 74650
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>ref|XM_474454.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1017

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 405 cgtccggggtggtcacgtccaggtcctgcagccggtt 441
           |||| |||||| |||||||||||| ||||||||||||
Sbjct: 733 cgtcgggggtgatcacgtccaggttctgcagccggtt 697
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                        
Query: 317     tcggtgcgccagtcggcggtgagct 341
               |||||||||||||||||||||||||
Sbjct: 3987749 tcggtgcgccagtcggcggtgagct 3987773
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>dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030A01, full
           insert sequence
          Length = 1240

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 405 cgtccggggtggtcacgtccaggtcctgcagccggtt 441
           |||| |||||| |||||||||||| ||||||||||||
Sbjct: 799 cgtcgggggtgatcacgtccaggttctgcagccggtt 763
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>tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx64 gene for
           class III peroxidase 64 precursor, exons 1-2
          Length = 1091

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 405 cgtccggggtggtcacgtccaggtcctgcagccggtt 441
           |||| |||||| |||||||||||| ||||||||||||
Sbjct: 807 cgtcgggggtgatcacgtccaggttctgcagccggtt 771
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>ref|NM_187573.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 969

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 328 gtcggcggtgagcttctggtcggagg 353
           ||||||||||||| ||||||||||||
Sbjct: 819 gtcggcggtgagcgtctggtcggagg 794
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 328     gtcggcggtgagcttctggtcggagg 353
               ||||||||||||| ||||||||||||
Sbjct: 1158458 gtcggcggtgagcgtctggtcggagg 1158483



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 254      atggaggcagcaaactggcc 273
                ||||||||||||||||||||
Sbjct: 30691785 atggaggcagcaaactggcc 30691766
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>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08,
             complete sequence
          Length = 100986

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 328   gtcggcggtgagcttctggtcggagg 353
             ||||||||||||| ||||||||||||
Sbjct: 62162 gtcggcggtgagcgtctggtcggagg 62187
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 328     gtcggcggtgagcttctggtcggagg 353
               ||||||||||||| ||||||||||||
Sbjct: 1158456 gtcggcggtgagcgtctggtcggagg 1158481



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 254      atggaggcagcaaactggcc 273
                ||||||||||||||||||||
Sbjct: 30783207 atggaggcagcaaactggcc 30783188
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>dbj|AK120047.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H03, full
           insert sequence
          Length = 520

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 328 gtcggcggtgagcttctggtcggagg 353
           ||||||||||||| ||||||||||||
Sbjct: 229 gtcggcggtgagcgtctggtcggagg 204
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>dbj|AK064633.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H03, full
           insert sequence
          Length = 1164

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 328 gtcggcggtgagcttctggtcggagg 353
           ||||||||||||| ||||||||||||
Sbjct: 873 gtcggcggtgagcgtctggtcggagg 848
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>tpe|BN000563.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx34 gene for
            class III peroxidase 34 precursor, exons 1-4
          Length = 1461

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 328  gtcggcggtgagcttctggtcggagg 353
            ||||||||||||| ||||||||||||
Sbjct: 1311 gtcggcggtgagcgtctggtcggagg 1286
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>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds
          Length = 760

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 387 agtacttgttgtcaaacacgtccgg 411
           ||||||||||||| |||||||||||
Sbjct: 354 agtacttgttgtcgaacacgtccgg 330
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>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase
          Length = 740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 387 agtacttgttgtcaaacacgtccgg 411
           ||||||||||||| |||||||||||
Sbjct: 253 agtacttgttgtcgaacacgtccgg 229
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>ref|XM_474448.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1023

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gtcggaggtgaacaccccct 365
           ||||||||||||||||||||
Sbjct: 807 gtcggaggtgaacaccccct 788
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>ref|XM_469777.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1023

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 atggaggcagcaaactggcc 273
           ||||||||||||||||||||
Sbjct: 651 atggaggcagcaaactggcc 632
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>gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
              OSJNBa0032E21, complete sequence
          Length = 137580

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    atggaggcagcaaactggcc 273
              ||||||||||||||||||||
Sbjct: 112000 atggaggcagcaaactggcc 112019
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>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence
          Length = 181742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 367   gccctcttgcaggttggtgaagta 390
             |||||| |||||||||||||||||
Sbjct: 29820 gccctcctgcaggttggtgaagta 29797
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>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete
             sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   atggaggcagcaaactggcc 273
             ||||||||||||||||||||
Sbjct: 70607 atggaggcagcaaactggcc 70626
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>gb|AC114822.7| Mus musculus BAC clone RP23-113A12 from 2, complete sequence
          Length = 209762

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 15     actattgtaaccaattaatataaa 38
              |||||||||||||||| |||||||
Sbjct: 123547 actattgtaaccaatttatataaa 123570
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>emb|AL512625.10| Human DNA sequence from clone RP11-262H14 on chromosome 9 Contains
             three novel genes, a novel pseudogene, two novel
             pseudogenes (LOC339742), a tumor suppressor deleted in
             oral cancer-related 1 (DOC-1R) pseudogene, a pseudogene
             similar to part of prostaglandin E receptor 4 (subtype
             EP4) (PTGER4), a pseudogene similar to part of myosin VA
             (heavy polypeptide 12, myoxin) (MYO5A), a pseudogene
             similar to part of G protein-coupled receptor 116
             (GPR116), a pseudogene similar to part of fibroblast
             growth factor 7 (keratinocyte growth factor) (FGF7) and
             five CpG islands, complete sequence
          Length = 159539

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ctattgtaaccaattaatat 35
             ||||||||||||||||||||
Sbjct: 11820 ctattgtaaccaattaatat 11839
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>gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic sequence, complete
           sequence
          Length = 128294

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 atggaggcagcaaactggcc 273
           ||||||||||||||||||||
Sbjct: 486 atggaggcagcaaactggcc 467
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     ttgtaaccaattaatataaa 38
              ||||||||||||||||||||
Sbjct: 272249 ttgtaaccaattaatataaa 272230
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>emb|CR627148.1| Homo sapiens mRNA; cDNA DKFZp779F2127 (from clone DKFZp779F2127)
          Length = 2894

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   ctattgtaaccaattaatat 35
            ||||||||||||||||||||
Sbjct: 1109 ctattgtaaccaattaatat 1128
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>gb|AC135960.14| Pan troglodytes clone rp43-55o12, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 249    tggtcatggaggcagcaaactggc 272
              |||||| |||||||||||||||||
Sbjct: 142122 tggtcagggaggcagcaaactggc 142145
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>gb|AC137066.23| Pan troglodytes clone ptb-31f12, complete sequence
          Length = 153498

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 249   tggtcatggaggcagcaaactggc 272
             |||||| |||||||||||||||||
Sbjct: 93872 tggtcagggaggcagcaaactggc 93849
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 345     ggtcggaggtgaacacccccttgc 368
               ||||||||||||||||| ||||||
Sbjct: 3125766 ggtcggaggtgaacaccaccttgc 3125789
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>dbj|AK104928.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B06, full
           insert sequence
          Length = 1299

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gtcggaggtgaacaccccct 365
           ||||||||||||||||||||
Sbjct: 896 gtcggaggtgaacaccccct 877
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>dbj|AK099287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H11, full
           insert sequence
          Length = 1715

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 atggaggcagcaaactggcc 273
           ||||||||||||||||||||
Sbjct: 623 atggaggcagcaaactggcc 604
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>dbj|AK069033.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004G24, full
           insert sequence
          Length = 877

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 atggaggcagcaaactggcc 273
           ||||||||||||||||||||
Sbjct: 626 atggaggcagcaaactggcc 607
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>dbj|AK065090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001L22, full
           insert sequence
          Length = 1333

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gtcggaggtgaacaccccct 365
           ||||||||||||||||||||
Sbjct: 897 gtcggaggtgaacaccccct 878
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>tpe|BN000590.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx61 gene for
           class III peroxidase 61, exons 1-2
          Length = 1178

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gtcggaggtgaacaccccct 365
           ||||||||||||||||||||
Sbjct: 962 gtcggaggtgaacaccccct 943
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>gb|BC039680.1| Homo sapiens, clone IMAGE:5213378, mRNA
          Length = 1312

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   ctattgtaaccaattaatat 35
            ||||||||||||||||||||
Sbjct: 1082 ctattgtaaccaattaatat 1101
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>emb|AL929043.7| Mouse DNA sequence from clone RP23-58H6 on chromosome 2, complete
             sequence
          Length = 164834

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    actattgtaaccaattaatataaa 38
             |||||||||||||||| |||||||
Sbjct: 27555 actattgtaaccaatttatataaa 27578


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,997,041
Number of Sequences: 3902068
Number of extensions: 2997041
Number of successful extensions: 46677
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46401
Number of HSP's gapped (non-prelim): 276
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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