>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)|
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase)
          Length = 538

 Score = 85.5 bits (210), Expect = 8e-17
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
 Frame = -2

Query: 527 RAGVLYNIQYMNFWSMASGDGAVQ-TRWIREFYAFMAPFVSSSPREAYFNYRDLDLG--- 360
           R+G    ++Y+  W+ +      +   W+ + Y FM PFVS +PR  Y N+ DLDLG   
Sbjct: 409 RSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGID 468

Query: 359 --ENVVVGNVSSFQAGMVWGQKYFKGNYQRLAMAKAQIDPDDYFRNEQSIPPFAN 201
                VV N  + +    WG+ YF  NY+RL  AK  IDP++ F + QSIPP AN
Sbjct: 469 WGNKTVVNN--AIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMAN 521

>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)|
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase)
          Length = 535

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
 Frame = -2

Query: 527 RAGVLYNIQYMNFWSMASGDGAVQ-TRWIREFYAFMAPFVSSSPREAYFNYRDLDLGENV 351
           R G     +Y+  W+        + + W+ +FY ++ PFVS  PR  Y N+ DLD+G  +
Sbjct: 413 RKGTKLMFEYIIAWNQDEESKIGEFSEWLAKFYDYLEPFVSKEPRVGYVNHIDLDIG-GI 471

Query: 350 VVGNVSS----FQAGMVWGQKYFKGNYQRLAMAKAQIDPDDYFRNEQSIPP 210
              N SS     +    WG++YF  NY+RL  AK  IDP++ F + QSIPP
Sbjct: 472 DWRNKSSTTNAVEIARNWGERYFSSNYERLVKAKTLIDPNNVFNHPQSIPP 522

>MCRA_STRLA (P43485) Mitomycin radical oxidase (EC 1.5.3.-)|
          Length = 447

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 299 YFKGNYQRLAMAKAQIDPDDYFRNEQSIPP 210
           Y   ++ RL   KAQ DPD+ FR   +IPP
Sbjct: 413 YTPADFARLRAVKAQYDPDNMFRVNFNIPP 442

>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2|
           (Elongin A2) (EloA2) (Transcription elongation factor B
           polypeptide 3B)
          Length = 753

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 396 PRAGAHERRHERVELPDPPGLHGPVPRRHRPE 491
           PR+ +H   H R     PPG   P PR H  E
Sbjct: 119 PRSPSHSPEHRRTARRTPPGQQRPHPRSHSRE 150

>RNH2_PSE14 (Q48F73) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 222

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 186 VRSPAIGKWRDALLVPEVVVGVD-LGLGHRQPLVVTLEVLLAPDHP 320
           +RSP +    D  LV ++V GVD +G G     VVT  V+L P  P
Sbjct: 1   MRSPIMQTGLDFTLVEDLVAGVDEVGRGPLCGAVVTAAVILDPARP 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,024,972
Number of Sequences: 219361
Number of extensions: 1188269
Number of successful extensions: 3154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3152
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)