No.
Definition
Score (bits)
E Value
1 gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full...
80
6e-12
2 gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome...
70
6e-09
3 gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome...
70
6e-09
4 gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome...
70
6e-09
5 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
70
6e-09
6 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
70
6e-09
7 gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome...
60
5e-06
8 dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon...
54
3e-04
9 ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA
48
0.020
10 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
48
0.020
11 dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic D...
48
0.020
12 gb|AY107519.1| Zea mays PCO078033 mRNA sequence
46
0.081
13 gb|AC101777.8| Mus musculus chromosome 1, clone RP24-123J3, comp...
42
1.3
14 gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1...
42
1.3
15 ref|XM_746399.1| Aspergillus fumigatus Af293 actin-related prote...
42
1.3
16 ref|XM_501466.1| Yarrowia lipolytica CLIB122, YALI0C05258g predi...
42
1.3
17 gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, co...
42
1.3
18 dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clon...
42
1.3
19 gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequ...
42
1.3
20 emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1...
42
1.3
21 gb|AC134248.3| Mus musculus BAC clone RP23-338G21 from chromosom...
40
5.0
22 ref|XM_989083.1| PREDICTED: Mus musculus transglutaminase 4 (pro...
40
5.0
23 ref|XM_791236.1| PREDICTED: Strongylocentrotus purpuratus simila...
40
5.0
24 emb|AL353701.15| Human DNA sequence from clone RP11-203M2 on chr...
40
5.0
25 gb|AC012495.9| Homo sapiens BAC clone RP11-327F6 from 2, complet...
40
5.0
26 dbj|AK035279.1| Mus musculus adult male urinary bladder cDNA, RI...
40
5.0
27 gb|AC017087.5|AC017087 Homo sapiens BAC clone RP11-495H13 from 4...
40
5.0
28 emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in ...
40
5.0
29 gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Ca...
40
5.0
30 gb|AF486627.1| Mus musculus experimental autoimmune prostatitis ...
40
5.0
31 dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
5.0
32 dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
5.0
33 dbj|AP001458.6| Homo sapiens genomic DNA, chromosome 11 clone:RP...
40
5.0
34 gb|AC133650.4| Mus musculus BAC clone RP23-453B15 from 9, comple...
40
5.0
35 ref|NM_177911.2| Mus musculus transglutaminase 4 (prostate) (Tgm...
40
5.0
36 emb|AL672285.8| Mouse DNA sequence from clone RP23-45G5 on chrom...
40
5.0
37 emb|AL805949.4| Mouse DNA sequence from clone RP23-424K9 on chro...
40
5.0
38 emb|AL645736.9| Mouse DNA sequence from clone RP23-474J7 on chro...
40
5.0
>gb|AC112208.3 | Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
map C53961S, complete sequence
Length = 175121
Score = 69.9 bits (35), Expect = 6e-09
Identities = 131/163 (80%)
Strand = Plus / Plus
Query: 102 tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 161
||||| |||||||||| ||| ||||||||||||| ||||| ||||| || ||| |||||
Sbjct: 140244 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 140303
Query: 162 aagccagccttggtgaagatctcgttccagtccttctcttcccgctgtcggcctctcgtc 221
||||| || ||| |||||| || ||| || ||||| || |||||||||||| | |||
Sbjct: 140304 aagcctgctttgctgaagagatcacgccaatcattctcgtctcgctgtcggcctttggtc 140363
Query: 222 atcaccagcatgagcatatccatgaggggctgggtttccagca 264
| ||||| ||| || |||||||||| |||||| ||| ||||
Sbjct: 140364 accaccatcatagccacatccatgaggagctgggcttctagca 140406
Score = 65.9 bits (33), Expect = 9e-08
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 106 gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagc 165
|||||||||||| | ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 138362 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 138420
Query: 166 c 166
|
Sbjct: 138421 c 138421
Score = 54.0 bits (27), Expect = 3e-04
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 105 ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 155
||||||||||||| |||||||||||||| || || || ||||||||||||
Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 116006
Score = 44.1 bits (22), Expect = 0.32
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 105 ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaag 164
|||||||||||||||||| |||| ||||| ||||| |||||||| ||| | ||||||
Sbjct: 80889 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtccctgaag 80948
Query: 165 cc 166
||
Sbjct: 80949 cc 80950
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 69.9 bits (35), Expect = 6e-09
Identities = 131/163 (80%)
Strand = Plus / Plus
Query: 102 tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 161
||||| |||||||||| ||| ||||||||||||| ||||| ||||| || ||| |||||
Sbjct: 11353886 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11353945
Query: 162 aagccagccttggtgaagatctcgttccagtccttctcttcccgctgtcggcctctcgtc 221
||||| || ||| |||||| || ||| || ||||| || |||||||||||| | |||
Sbjct: 11353946 aagcctgctttgctgaagagatcacgccaatcattctcgtctcgctgtcggcctttggtc 11354005
Query: 222 atcaccagcatgagcatatccatgaggggctgggtttccagca 264
| ||||| ||| || |||||||||| |||||| ||| ||||
Sbjct: 11354006 accaccatcatagccacatccatgaggagctgggcttctagca 11354048
Score = 69.9 bits (35), Expect = 6e-09
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 103 atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 162
||||||||||||| | |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 7137527 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 7137586
Query: 163 agccagc 169
| |||||
Sbjct: 7137587 atccagc 7137593
Score = 65.9 bits (33), Expect = 9e-08
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 106 gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagc 165
|||||||||||| | ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 11352004 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 11352062
Query: 166 c 166
|
Sbjct: 11352063 c 11352063
Score = 60.0 bits (30), Expect = 5e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 106 gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaa 163
|||||||||| | |||||||||||| || || ||||| |||||||||||| |||||||
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 11549372
Score = 54.0 bits (27), Expect = 3e-04
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 105 ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 155
||||||||||||| |||||||||||||| || || || ||||||||||||
Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 11329648
Score = 44.1 bits (22), Expect = 0.32
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 105 ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaag 164
|||||||||||||||||| |||| ||||| ||||| |||||||| ||| | ||||||
Sbjct: 11294531 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtccctgaag 11294590
Query: 165 cc 166
||
Sbjct: 11294591 cc 11294592
Score = 42.1 bits (21), Expect = 1.3
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 108 tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 167
||||||||||||||| ||||||||| || || || | ||||| ||| | ||||| |||
Sbjct: 11485504 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 11485445
Query: 168 gccttggtgaagatctc 184
|| || |||||||||||
Sbjct: 11485444 gcattagtgaagatctc 11485428
Score = 42.1 bits (21), Expect = 1.3
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 102 tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 161
|||||||||||||||| || ||||| ||| |||||||| |||||||| || |||||
Sbjct: 11437238 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgtaatcactg 11437297
Query: 162 aagcc 166
|||||
Sbjct: 11437298 aagcc 11437302
Score = 40.1 bits (20), Expect = 5.0
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 124 ctcgagctcccagcttcttgacaatcttatag 155
|||||||||| ||| |||| ||||||||||||
Sbjct: 11490647 ctcgagctccaagcatcttcacaatcttatag 11490678
>gb|DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 69.9 bits (35), Expect = 6e-09
Identities = 131/163 (80%)
Strand = Plus / Plus
Query: 102 tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 161
||||| |||||||||| ||| ||||||||||||| ||||| ||||| || ||| |||||
Sbjct: 11433075 tatgggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactg 11433134
Query: 162 aagccagccttggtgaagatctcgttccagtccttctcttcccgctgtcggcctctcgtc 221
||||| || ||| |||||| || ||| || ||||| || |||||||||||| | |||
Sbjct: 11433135 aagcctgctttgctgaagagatcacgccaatcattctcgtctcgctgtcggcctttggtc 11433194
Query: 222 atcaccagcatgagcatatccatgaggggctgggtttccagca 264
| ||||| ||| || |||||||||| |||||| ||| ||||
Sbjct: 11433195 accaccatcatagccacatccatgaggagctgggcttctagca 11433237
Score = 69.9 bits (35), Expect = 6e-09
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 103 atggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactga 162
||||||||||||| | |||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 7203498 atggatagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactga 7203557
Query: 163 agccagc 169
| |||||
Sbjct: 7203558 atccagc 7203564
Score = 65.9 bits (33), Expect = 9e-08
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 106 gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagc 165
|||||||||||| | ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 11431193 gatagacctcaaatatagctcgagctcccag-ttcttcacaatcttatagtcactgaagc 11431251
Query: 166 c 166
|
Sbjct: 11431252 c 11431252
Score = 60.0 bits (30), Expect = 5e-06
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 106 gatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaa 163
|||||||||| | |||||||||||| || || ||||| |||||||||||| |||||||
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaa 11628561
Score = 54.0 bits (27), Expect = 3e-04
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 105 ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatag 155
||||||||||||| |||||||||||||| || || || ||||||||||||
Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatag 11408837
Score = 44.1 bits (22), Expect = 0.32
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 105 ggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaag 164
|||||||||||||||||| |||| ||||| ||||| |||||||| ||| | ||||||
Sbjct: 11373720 ggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtccctgaag 11373779
Query: 165 cc 166
||
Sbjct: 11373780 cc 11373781
Score = 42.1 bits (21), Expect = 1.3
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 108 tagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactgaagcca 167
||||||||||||||| ||||||||| || || || | ||||| ||| | ||||| |||
Sbjct: 11564693 tagacctcaatgacacatcgagctcctagtttgttcatgatcttgtagtcgctgaatcca 11564634
Query: 168 gccttggtgaagatctc 184
|| || |||||||||||
Sbjct: 11564633 gcattagtgaagatctc 11564617
Score = 42.1 bits (21), Expect = 1.3
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 102 tatggatagacctcaatgacagctcgagctcccagcttcttgacaatcttatagccactg 161
|||||||||||||||| || ||||| ||| |||||||| |||||||| || |||||
Sbjct: 11516427 tatggatagacctcaaagatgcctcgaattcctagcttcttcacaatcttgtaatcactg 11516486
Query: 162 aagcc 166
|||||
Sbjct: 11516487 aagcc 11516491
Score = 40.1 bits (20), Expect = 5.0
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 124 ctcgagctcccagcttcttgacaatcttatag 155
|||||||||| ||| |||| ||||||||||||
Sbjct: 11569836 ctcgagctccaagcatcttcacaatcttatag 11569867
>emb|AL645736.9 | Mouse DNA sequence from clone RP23-474J7 on chromosome 2, complete
sequence
Length = 98571
Score = 40.1 bits (20), Expect = 5.0
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 156 ccactgaagccagccttggtgaag 179
||||||||||||| ||||||||||
Sbjct: 32627 ccactgaagccagacttggtgaag 32650
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,159,018
Number of Sequences: 3902068
Number of extensions: 3159018
Number of successful extensions: 55621
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55379
Number of HSP's gapped (non-prelim): 235
length of query: 374
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 352
effective length of database: 17,147,199,772
effective search space: 6035814319744
effective search space used: 6035814319744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)