ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart16h11 |
|---|---|
| Clone Library Name | barley_pub |
>CEMA_MARPO (P12211) Chloroplast envelope membrane protein| Length = 434 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 318 HPPHSTKMVLSLLLYHFL*VHSHHII 241 H PH ++V+S L HF VH+ H+I Sbjct: 370 HSPHGWEIVISSCLEHFGFVHNKHVI 395
>TOLB_PARUW (Q6MA25) Protein tolB precursor| Length = 469 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +3 Query: 3 DSHHLSFTSSKEPCLAYWPVANVDPDTRVQQTRLLKRHANNTVTSATAFSPDGSSKA 173 D ++F S K+ + +A +P T ++ + N +SA A+SPDG+ A Sbjct: 327 DGTKVAFVSDKDGSPKIYVIAIPEPGTSLKNIKATLITKRNRESSAPAWSPDGTKIA 383
>OTX2_BRARE (Q91981) Homeobox protein OTX2 (ZOTX2)| Length = 289 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/60 (25%), Positives = 24/60 (40%) Frame = -1 Query: 334 WPCLHTPPTLYQNGXXXXXXXXXXXSLASYYTPVTIKALDPSPCISPRNSNKTPALLDPS 155 +P +T + Y G SY TP+ + P +SP +SN + L+ S Sbjct: 175 YPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLTGPGSTLSPMSSNAVTSHLNQS 234
>NET1_MOUSE (O09118) Netrin-1 precursor| Length = 604 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -2 Query: 189 TLIKPQLCSIRPEKRRSPM*QYYSRAFSTVVFVEHECPDQHLQLANRPSRAPL 31 T + Q CS RPE Y R + F +C ++ NRP RAP+ Sbjct: 145 TYVSLQFCSPRPESMAIYKSMDYGRTWVPFQFYSTQC----RKMYNRPHRAPI 193
>NET1_HUMAN (O95631) Netrin-1 precursor| Length = 604 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -2 Query: 189 TLIKPQLCSIRPEKRRSPM*QYYSRAFSTVVFVEHECPDQHLQLANRPSRAPL 31 T + Q CS RPE Y R + F +C ++ NRP RAP+ Sbjct: 145 TYVSLQFCSPRPESMAIYKSMDYGRTWVPFQFYSTQC----RKMYNRPHRAPI 193
>RCBT2_PONPY (Q5RCZ7) RCC1 and BTB domain-containing protein 2 (Regulator of| chromosome condensation and BTB domain-containing protein 2) Length = 551 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Frame = +3 Query: 12 HLSFTSSKEPCLAY----WPVANVDPDTRVQQTRLLKRHANNTVTSATAFSPDG 161 H S T C A W + +V+PD + LKR +N T+ F DG Sbjct: 349 HFSCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDG 402
>RCBT2_HUMAN (O95199) RCC1 and BTB domain-containing protein 2 (Regulator of| chromosome condensation and BTB domain-containing protein 2) (Chromosome condensation 1-like) (CHC1-L) (RCC1-like G exchanging factor) Length = 551 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Frame = +3 Query: 12 HLSFTSSKEPCLAY----WPVANVDPDTRVQQTRLLKRHANNTVTSATAFSPDG 161 H S T C A W + +V+PD + LKR +N T+ F DG Sbjct: 349 HFSCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDG 402
>ASIP_PIG (Q6ZYM3) Agouti signaling protein precursor (ASP) (Agouti switch| protein) Length = 131 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/49 (34%), Positives = 21/49 (42%) Frame = -1 Query: 214 PSPCISPRNSNKTPALLDPSGEKAVADVTVLFACLFNSRVC*TRVSGST 68 P+PC++ R+S K PAL A D C F C RV T Sbjct: 89 PAPCVANRDSCKPPAL-------ACCDPCAFCQCRFFRSACSCRVLNPT 130
>UL48_HCMVA (P16785) Probable large tegument protein| Length = 2241 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = -2 Query: 243 IHP*Q*KPLILPRVFHPETLIKPQLCSIRPEKRRSPM*QYYSRAFSTVVF 94 I P Q + L ++F L++ QLC + P+K P+ + + A +T+VF Sbjct: 1806 ITPTQWPAMQLNKLFWENKLVQ-QLCQVGPQKSTPPLGKLWLYAMATLVF 1854
>ASIP_VULVU (P79407) Agouti signaling protein precursor (ASP) (Agouti switch| protein) Length = 131 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -1 Query: 214 PSPCISPRNSNKTPALLDPSGEKAVADVTVLFACLFNSRVC*TRV 80 P+PC++ RNS K+PA A D C F C RV Sbjct: 89 PNPCVATRNSCKSPA-------PACCDPCASCQCRFFRSACTCRV 126
>ASIP_CANFA (Q5UK76) Agouti signaling protein precursor (ASP) (Agouti switch| protein) Length = 131 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -1 Query: 214 PSPCISPRNSNKTPALLDPSGEKAVADVTVLFACLFNSRVC*TRV 80 P+PC++ RNS K+PA A D C F C RV Sbjct: 89 PTPCVATRNSCKSPA-------PACCDPCASCQCRFFRSACTCRV 126
>YR718_MIMIV (Q5UNW9) Hypothetical protein R718| Length = 130 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/11 (72%), Positives = 10/11 (90%) Frame = +2 Query: 215 IKGFYCHGCII 247 I GFYCHGC++ Sbjct: 92 ITGFYCHGCVL 102
>ATSY_SYNP7 (P37385) Probable copper-transporting ATPase synA (EC 3.6.3.4)| Length = 790 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = +3 Query: 57 PVANVDPDTRVQQTRLLKRHANNTVTSATAFSPDGSSKAGVLLEFRGEIHGEGSRAFIVT 236 P+A+VDPD +Q L+ + + + +A + ++ A + R ++ G G V+ Sbjct: 493 PLADVDPDRLLQWAAALEADSRHPLATALQTAAQAANLAPIAASDRQQVPGLG-----VS 547 Query: 237 GV*YDASELTGNDT-VEVTT 293 G S GN T V+V T Sbjct: 548 GTCDGRSLRLGNPTWVQVAT 567
>ATSY_SYNP6 (P07893) Probable copper-transporting ATPase synA (EC 3.6.3.4)| Length = 790 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = +3 Query: 57 PVANVDPDTRVQQTRLLKRHANNTVTSATAFSPDGSSKAGVLLEFRGEIHGEGSRAFIVT 236 P+A+VDPD +Q L+ + + + +A + ++ A + R ++ G G V+ Sbjct: 493 PLADVDPDRLLQWAAALEADSRHPLATALQTAAQAANLAPIAASDRQQVPGLG-----VS 547 Query: 237 GV*YDASELTGNDT-VEVTT 293 G S GN T V+V T Sbjct: 548 GTCDGRSLRLGNPTWVQVAT 567 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,100,377 Number of Sequences: 219361 Number of extensions: 1346918 Number of successful extensions: 3268 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3177 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3267 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
