Clone Name | rbart16h10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC096642.2| Homo sapiens chromosome 1 clone RP11-392O17, complete sequence Length = 179048 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 27 caaaacatttcctccatatacag 49 ||||||||||||||||||||||| Sbjct: 82895 caaaacatttcctccatatacag 82873
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 aacaccctaaccacaaacaattac 80 |||||||| ||||||||||||||| Sbjct: 66457 aacaccctcaccacaaacaattac 66480
>ref|NM_196545.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0053G13.19), mRNA Length = 3840 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acaccatccaccatcatcac 168 |||||||||||||||||||| Sbjct: 977 acaccatccaccatcatcac 958
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 cgtacgtactaccttcttct 420 |||||||||||||||||||| Sbjct: 1029613 cgtacgtactaccttcttct 1029594
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence Length = 141582 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 aaaatatgaagtatttacac 191 |||||||||||||||||||| Sbjct: 3294 aaaatatgaagtatttacac 3313
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 aaaatatgaagtatttacac 191 |||||||||||||||||||| Sbjct: 32876247 aaaatatgaagtatttacac 32876228
>ref|XM_572293.1| Cryptococcus neoformans var. neoformans JEC21 myo-inositol transporter 2 (CNH00990) partial mRNA Length = 1957 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 tctctgcttccgccattgct 457 |||||||||||||||||||| Sbjct: 381 tctctgcttccgccattgct 400
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 cgtacgtactaccttcttct 420 |||||||||||||||||||| Sbjct: 1033254 cgtacgtactaccttcttct 1033235
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 aaaatatgaagtatttacac 191 |||||||||||||||||||| Sbjct: 113928 aaaatatgaagtatttacac 113947
>gb|AC108161.4| Homo sapiens BAC clone RP11-621K7 from 4, complete sequence Length = 83023 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctaaccacaaacaattacat 82 |||||||||||||||||||| Sbjct: 14429 ctaaccacaaacaattacat 14410
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 acaccatccaccatcatcac 168 |||||||||||||||||||| Sbjct: 14385814 acaccatccaccatcatcac 14385833
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 aacaccctaaccacaaacaattac 80 |||||||| ||||||||||||||| Sbjct: 19347231 aacaccctcaccacaaacaattac 19347254
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 aaaatatgaagtatttacac 191 |||||||||||||||||||| Sbjct: 32966757 aaaatatgaagtatttacac 32966738
>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14, complete sequence Length = 155420 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 acaccatccaccatcatcac 168 |||||||||||||||||||| Sbjct: 177 acaccatccaccatcatcac 196
>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13, complete sequence Length = 138245 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 acaccatccaccatcatcac 168 |||||||||||||||||||| Sbjct: 133089 acaccatccaccatcatcac 133108
>gb|AC104362.15| Homo sapiens chromosome 11, clone RP11-1023E15, complete sequence Length = 184077 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aaacaattacatgatatata 90 |||||||||||||||||||| Sbjct: 136018 aaacaattacatgatatata 135999
>dbj|AK119359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G05, full insert sequence Length = 2971 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acaccatccaccatcatcac 168 |||||||||||||||||||| Sbjct: 729 acaccatccaccatcatcac 710
>emb|BX294130.5| Zebrafish DNA sequence from clone DKEY-263O22 in linkage group 19, complete sequence Length = 205973 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 caacaccctaaccacaaacaatta 79 ||||||||| |||||||||||||| Sbjct: 188671 caacaccctcaccacaaacaatta 188648
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 cgtacgtactaccttcttct 420 |||||||||||||||||||| Sbjct: 1000816 cgtacgtactaccttcttct 1000797
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 cgtacgtactaccttcttct 420 |||||||||||||||||||| Sbjct: 1119119 cgtacgtactaccttcttct 1119100
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 acaccatccaccatcatcac 168 |||||||||||||||||||| Sbjct: 14394056 acaccatccaccatcatcac 14394075 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,620,380 Number of Sequences: 3902068 Number of extensions: 3620380 Number of successful extensions: 85707 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85374 Number of HSP's gapped (non-prelim): 333 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)