ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart16h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC096642.2| Homo sapiens chromosome 1 clone RP11-392O17, comp... 46 0.10
2gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome ... 40 6.3
3ref|NM_196545.1| Oryza sativa (japonica cultivar-group) unknown ... 40 6.3
4gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 6.3
5gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 40 6.3
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.3
7ref|XM_572293.1| Cryptococcus neoformans var. neoformans JEC21 m... 40 6.3
8gb|CP000001.1| Bacillus cereus E33L, complete genome 40 6.3
9gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genom... 40 6.3
10gb|AC108161.4| Homo sapiens BAC clone RP11-621K7 from 4, complet... 40 6.3
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
12dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
14gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) ch... 40 6.3
15gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) ch... 40 6.3
16gb|AC104362.15| Homo sapiens chromosome 11, clone RP11-1023E15, ... 40 6.3
17dbj|AK119359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
18emb|BX294130.5| Zebrafish DNA sequence from clone DKEY-263O22 in... 40 6.3
19gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 6.3
20gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 6.3
21gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3

>gb|AC096642.2| Homo sapiens chromosome 1 clone RP11-392O17, complete sequence
          Length = 179048

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 27    caaaacatttcctccatatacag 49
             |||||||||||||||||||||||
Sbjct: 82895 caaaacatttcctccatatacag 82873



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>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0072P02, complete sequence
          Length = 157488

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 57    aacaccctaaccacaaacaattac 80
             |||||||| |||||||||||||||
Sbjct: 66457 aacaccctcaccacaaacaattac 66480



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>ref|NM_196545.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0053G13.19), mRNA
          Length = 3840

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 acaccatccaccatcatcac 168
           ||||||||||||||||||||
Sbjct: 977 acaccatccaccatcatcac 958



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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 401     cgtacgtactaccttcttct 420
               ||||||||||||||||||||
Sbjct: 1029613 cgtacgtactaccttcttct 1029594



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>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence,
            complete sequence
          Length = 141582

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  aaaatatgaagtatttacac 191
            ||||||||||||||||||||
Sbjct: 3294 aaaatatgaagtatttacac 3313



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 172      aaaatatgaagtatttacac 191
                ||||||||||||||||||||
Sbjct: 32876247 aaaatatgaagtatttacac 32876228



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>ref|XM_572293.1| Cryptococcus neoformans var. neoformans JEC21 myo-inositol
           transporter 2 (CNH00990) partial mRNA
          Length = 1957

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 tctctgcttccgccattgct 457
           ||||||||||||||||||||
Sbjct: 381 tctctgcttccgccattgct 400



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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 401     cgtacgtactaccttcttct 420
               ||||||||||||||||||||
Sbjct: 1033254 cgtacgtactaccttcttct 1033235



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>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete
              sequence
          Length = 151479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    aaaatatgaagtatttacac 191
              ||||||||||||||||||||
Sbjct: 113928 aaaatatgaagtatttacac 113947



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>gb|AC108161.4| Homo sapiens BAC clone RP11-621K7 from 4, complete sequence
          Length = 83023

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    ctaaccacaaacaattacat 82
             ||||||||||||||||||||
Sbjct: 14429 ctaaccacaaacaattacat 14410



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 149      acaccatccaccatcatcac 168
                ||||||||||||||||||||
Sbjct: 14385814 acaccatccaccatcatcac 14385833



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 57       aacaccctaaccacaaacaattac 80
                |||||||| |||||||||||||||
Sbjct: 19347231 aacaccctcaccacaaacaattac 19347254



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 172      aaaatatgaagtatttacac 191
                ||||||||||||||||||||
Sbjct: 32966757 aaaatatgaagtatttacac 32966738



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>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone
           nbxb0075H14, complete sequence
          Length = 155420

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 149 acaccatccaccatcatcac 168
           ||||||||||||||||||||
Sbjct: 177 acaccatccaccatcatcac 196



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>gb|AC027662.2|AC027662 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0053G13,
              complete sequence
          Length = 138245

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    acaccatccaccatcatcac 168
              ||||||||||||||||||||
Sbjct: 133089 acaccatccaccatcatcac 133108



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>gb|AC104362.15| Homo sapiens chromosome 11, clone RP11-1023E15, complete sequence
          Length = 184077

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     aaacaattacatgatatata 90
              ||||||||||||||||||||
Sbjct: 136018 aaacaattacatgatatata 135999



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>dbj|AK119359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G05, full
           insert sequence
          Length = 2971

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 acaccatccaccatcatcac 168
           ||||||||||||||||||||
Sbjct: 729 acaccatccaccatcatcac 710



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>emb|BX294130.5| Zebrafish DNA sequence from clone DKEY-263O22 in linkage group 19,
              complete sequence
          Length = 205973

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     caacaccctaaccacaaacaatta 79
              ||||||||| ||||||||||||||
Sbjct: 188671 caacaccctcaccacaaacaatta 188648



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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 401     cgtacgtactaccttcttct 420
               ||||||||||||||||||||
Sbjct: 1000816 cgtacgtactaccttcttct 1000797



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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 401     cgtacgtactaccttcttct 420
               ||||||||||||||||||||
Sbjct: 1119119 cgtacgtactaccttcttct 1119100



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 149      acaccatccaccatcatcac 168
                ||||||||||||||||||||
Sbjct: 14394056 acaccatccaccatcatcac 14394075


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,620,380
Number of Sequences: 3902068
Number of extensions: 3620380
Number of successful extensions: 85707
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85374
Number of HSP's gapped (non-prelim): 333
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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